Net ecosystem carbon dioxide exchange (NEE) was measured using the eddy covariance (EC) technique at a wetland tundra-sedge fen near Churchill, Manitoba, Canada during two consecutive growing seasons (2007 and 2008). Mean daily NEE at the fen (DOY 157-254) was -3.5 (± 0.26 S.E.) g CO2 m-2 d-1 in 2007 and -4.6 (± 0.36) g CO2 m-2 d-1 in 2008. The fen was a net carbon dioxide (CO2) sink during both the 2007 and 2008 growing seasons of -343 (± 79) and -450 (± 87) g CO2 m-2, respectively. Mean air temperature during the summer (June 1-August 31) was about 1°C greater than the historical average (1971-2000) in 2007 and about 2°C greater in 2008. Growing season precipitation was 107.5 mm below normal in 2007 and 359.5 mm above normal in 2008. These data suggest that if future climate change brings warmer temperatures and near-to-above average precipitation maintaining the water table near the surface, similar subarctic ecosystems will experience increased gross ecosystem productivity enhancing CO2 sequestration during the growing season.

abstract: Urbanization and woody plant encroachment, with subsequent brush management, are two significant land cover changes that are represented in the southwestern United States. Urban areas continue to grow, and rangelands are undergoing vegetation conversions, either purposely through various rangeland management techniques, or by accident, through inadvertent effects of climate and management. This thesis investigates how areas undergoing land cover conversions in a semiarid region, through urbanization or rangeland management, influences energy, water and carbon fluxes. Specifically, the following scientific questions are addressed: (1) what is the impact of different urban land cover types in Phoenix, AZ on energy and water fluxes?, (2) how does the land cover heterogeneity influence energy, water, and carbon fluxes in a semiarid rangeland undergoing woody plant encroachment?, and (3) what is the impact of brush management on energy, water, and carbon fluxes? The eddy covariance technique is well established to measure energy, water, and carbon fluxes and is used to quantify and compare flux measurements over different land surfaces. Results reveal that in an urban setting, paved surfaces exhibit the largest sensible and lowest latent heat fluxes in an urban environment, while a mesic landscape exhibits the largest latent heat fluxes, due to heavy irrigation. Irrigation impacts flux sensitivity to precipitation input, where latent heat fluxes increase with precipitation in xeric and parking lot landscapes, but do not impact the mesic system. In a semiarid managed rangeland, past management strategies and disturbance histories impact vegetation distribution, particularly the distribution of mesquite trees. At the site with less mesquite coverage, evapotranspiration (ET) is greater, due to greater grass cover. Both sites are generally net sinks of CO2, which is largely dependent on moisture availability, while the site with greater mesquite coverage has more respiration and generally greater gross ecosystem production (GEP). Initial impacts of brush management reveal ET and GEP decrease, due to the absence of mesquite trees. However the impact appears to be minimal by the end of the productive season. Overall, this dissertation advances the understanding of land cover change impacts on surface energy, water, and carbon fluxes in semiarid ecosystems. / Dissertation/Thesis / Doctoral Dissertation Civil, Environmental and Sustainable Engineering 2017

Terrestrial arctic ecosystems store large amounts of carbon (C). With global warming, this C might be released into the atmosphere as CO2 by stimulation of soil microbial degradation. At the same time, CO2 uptake in plants is enhanced, which might, in parts, offset CO2 losses. Yet, the future balance of these two contrasting feedbacks remain uncertain. This study aimed to better understand changes of input and output CO2 fluxes in an arctic tussock tundra ecosystem in response to global warming, with a special focus on the contrast between two sub-ecosystem habitats, the tussocks and the space between tussocks.  An experimental setup was used, where snow fences simulated winter warming by increasing snow depth, and open top chambers simulated summer warming. Daytime ecosystem respiration (ER), reflecting the outward CO2 flux, gross ecosystem production (GEP), reflecting the inward CO2 flux, and net ecosystem exchange (NEE), reflecting the net balance of both, were measured in the summer 2019 in the tussock and the intertussock habitat. In the tussock, both ER and GEP were as twice as high compared to the intertussock and increased with summer warming in a similar magnitude, resulting in an unchanged NEE. Fluxes in the intertussock were not altered with summer warming. Winter warming had no significant effects on ER and GEP in neither of the habitats. However, winter warming increased NEE and green biomass in the intertussock, indicating that in this habitat, plants benefit from warmer winter soil temperatures. Interaction effects of winter and summer warming underline the role of ecological processes outside the summer season, which are to date poorly understood. Contrasting responses of the two sub-ecosystem habitats highlight the challenges in predicting future C balances that are caused by small-scale spatial and temporal heterogeneity of C dynamics.

Une meilleure connaissance des variations saisonnières et interannuelles du cycle du carbone dans en Amazonie est essentielle afin de comprendre le rôle de cet écosystème dans le changement climatique. La modélisation atmosphérique inverse est un outil puissant pour estimer ces variations, en exploitant l'information sur la distribution spatiale et temporelle des flux de CO2 en surface contenue dans des observations de CO2 atmosphériques. Néanmoins, la confiance en les estimations des flux en Amazonie obtenues à partir des systèmes d'inversion mondiale est faible du fait du manque d'observations dans cette région.Dans ce contexte, j'ai d'abord analysé en détail les estimations de l'échange net de CO2 entre la biosphère et l'atmosphère (NEE) générées par deux inversions mondiales pour la période 2002 — 2010. Ces deux inversions ont assimilé des données provenant du réseau mondial d'observation du CO2 atmosphérique hors de l’Amérique du Sud, et une d'elles a assimilé des observations de quatre stations de surface en Amazonie, qui n'ont jamais été exploitées dans les études d'inversion précédentes. J'ai montré que dans une inversion mondiale les observations de stations loin d'Amazonie et les observations locales contrôlaient la NEE. Pourtant, les résultats ont révélé des structures à très grande échelle peu réalistes. L'analyse a confirmé le manque de stations en Amazonie pour fournir des estimations fiables, et les limites des systèmes d’inversion mondiale avec des modèles à très basse résolution.J'ai donc ensuite évalué l'apport de l'utilisation du modèle atmosphérique régional BRAMS, par rapport à celle du système mondial de prévision météorologique ECMWF, pour le forçage météorologique du modèle de transport atmosphérique CHIMERE simulant le CO2 en Amérique du Sud à haute résolution (~35 km). J'ai simulé le CO2 avec les deux modèles de transport―CHIMERE-BRAMS et CHIMERE-ECMWF. J'ai évalué ces simulations avec les profils verticaux de mesures aéroportées, en analysant les mesures individuelles et les gradients horizontaux de CO2 calculés entre paires de stations dans le sens du vent, à différentes altitudes ou intégrés sur la verticale. Les deux modèles de transport ont simulé les observations de CO2 avec une performance similaire, mais j'ai trouvé une importante incertitude sur les modèles de transport. Les mesures individuelles et les gradients horizontaux ont été surtout sensibles à la NEE, mais aussi, pendant la saison sèche, aux émissions des feux de biomasse (EFIRE). J'ai trouvé que l'assimilation des gradients horizontaux était plus approprié pour les inversions que celle des mesures individuelles, étant donné que les premiers ont été moins sensibles au signal associé aux flux hors de l'Amérique du Sud et à l'incertitude sur le modèle de transport en altitude.Finalement, j'ai développé deux systèmes d'inversion régionale pour l'Amérique du Sud tropicale avec les deux modèles de transport, et j'ai lancé des inversions avec quatre types de vecteurs d'observation: de mesures individuelles et gradients horizontaux sur cinq niveaux verticaux, à la surface, ou de gradients horizontaux intégrés sur la verticale. J'ai trouvé une forte dépendance des estimations des bilans régionaux et sub-régionaux de NEE et EFIRE au modèle de transport, ainsi qu'au vecteur d'observation. Les inversions assimilant des gradients horizontaux ont séparé mieux les signaux de NEE et EFIRE. Cependant, les grandes incertitudes sur les flux inversés ont réduit la confiance en ces estimations. Par conséquent, si mon étude n'a pas amélioré la connaissance des variations saisonnières et interannuelles de la NEE en Amazonie, elle a montré les besoins d'amélioration de la modélisation du transport dans la région et de la stratégie de modélisation inverse, du moins à travers une définition du vecteur d'observation appropriée qui prenne en compte les caractéristiques des données disponibles, et les limitations des modèles de transport actuels. / A better knowledge of the seasonal and inter-annual variations of the Amazon carbon cycle is critical to understand the influence of this terrestrial ecosystem on climate change. Atmospheric inverse modeling is a powerful tool to estimate these variations by extracting the information on the spatio-temporal patterns of surface CO2 fluxes contained in observations of atmospheric CO2. However, the confidence in the Amazon flux estimates obtained from global inversion frameworks is low, given the scarcity of observations in this region.In this context, I started by analyzing in detail the Amazon net ecosystem exchange (NEE) inferred with two global inversions over the period 2002 — 2010. Both inversions assimilated data from the global observation network outside Amazonia, and one of them also assimilated data from four stations in Amazonia that had not been used in previous inversion efforts. I demonstrated that in a global inversion the observations from sites distant from Amazonia, as well as local observations, controlled the NEE inferred through the inversion. The inferred fluxes revealed large-scale structures likely not consistent with the actual NEE in Amazonia. This analysis confirmed the lack of observation sites in Amazonia to provide reliable flux estimates, and exposed the limitations of global frameworks, using low-resolution models to quantify regional fluxes. This limitations justified developing a regional approach.Then I evaluated the benefit of the regional atmospheric model BRAMS, relative to the global forecast system ECMWF, when both models provided the meteorological fields to drive the atmospheric transport model CHIMERE to simulate CO2 transport in tropical South America at high resolution (~35 km). I simulated the CO2 distribution with both transport models―CHIMERE-BRAMS and CHIMERE-ECMWF. I evaluated the model simulations with aircraft measurements in vertical profiles, analyzing the concentrations associated to the individual measurements, but also with horizontal gradients along wind direction between pairs of sites at different altitudes, or vertically integrated. Both transport models simulated the CO2 observations with similar performance, but I found a strong impact of the uncertainty in the transport models. Both individual measurements and horizontal gradients were most sensitive to NEE, but also to biomass burning CO2 emissions (EFIRE) in the dry season. I found that horizontal gradients were more suitable for inversions than individual measurements, since the former were less sensitive fluxes outside South America and further decreased the impact of the transport model uncertainty in altitude.Finally, I developed two analytical regional inversion systems for tropical South America, driven with CHIMERE-BRAMS and CHIMERE-ECMWF, and made inversions with four observation vectors: individual concentration measurements and horizontal gradients at five vertical levels, close to the surface, or horizontal gradients vertically integrated. I found a strong dependency of the inverted regional and sub-regional NEE and EFIRE emissions budgets on both the transport model and the observation vector. Inversions with gradients yielded a better separation of NEE and EFIRE signals. However, the large uncertainties in the inverted fluxes, did not yield high confidence in the estimates. Therefore, even though my study did not improve the knowledge of seasonal and year-to-year variations of the NEE in Amazonia, it demonstrated need of further efforts to improve transport modeling in the region and the inverse modeling strategy, at least through a careful definition of the observation vector that accounts for the characteristics of the available data, and the limitations of the current transport models.

No description available.

Nesta tese investigou-se os padrões microclimáticos, de fluxos de energia e CO2 em uma floresta em planície de inundação da Ilha do Bananal, com ênfase nos efeitos da inundação sazonal nas variáveis atmosféricas e na produtividade do ecossistema, além de estimativas de fluxos aquáticos evasivos de CO2 e CH4. Para tanto, foram utilizadas técnicas micrometeorológicas de vórtices turbulentos, estimativas de armazenamento vertical de CO2 e dados medidos em uma torre micrometeorológica no período de 2004 a 2014, além de campanhas específicas para medidas de fluxos evasivos. Embora existam ciclos sazonais bem definidos de precipitação, temperatura do ar e umidade na região, controlados pela oferta radiativa, esta não explica diretamente as variações na evapotranspiração quando se busca explicá-la pelo aumento da disponibilidade energética. O particionamento da energia disponível aponta para um domínio do calor latente em comparação ao sensível durante períodos de decaimento do saldo de radiação, configurando um padrão peculiar não reportado na literatura. Os dados de temperatura do ar, precipitação pluviométrica, fluxos turbulentos de CO2 e fluxos energéticos (LE e H) mostraram uma possível influência das secas que ocorreram no lado oeste da região, também neste sítio experimental do leste. Os anos de 2005 e 2010 foram mais quentes, pouco chuvosos e mais secos que os demais anos da série de dados, e em 2010 ocorreu a menor produtividade líquida da estação seca. A inundação mostrou ter um papel importante nos fluxos de CO2, fazendo com que a produtividade bruta, a respiração do ecossistema e a produtividade líquida diminuam, somando-se os efeitos esperados pelo controle radiativo. A produtividade líquida respondeu aos efeitos da inundação semanas antes desta iniciar na torre, persistindo seus efeitos até algumas semanas depois, com a diminuição da produtividade. Já a respiração do ecossistema e a produtividade primária bruta mostraram ser mais sensíveis ao início da estação seca, com uma interrupção no declínio atribuído à inundação, provavelmente devido ao favorecimento da decomposição de matéria orgânica suspensa na água. Os resultados dos fluxos de carbono sugerem uma alta assimilação de CO2 pela floresta, o que requer corroboração através de medidas biométricas, não sendo, contudo, descartada a confiabilidade dos resultados. Os resultados da campanha para medidas de fluxos evasivos mostraram que o rio é uma fonte de CO2 para a atmosfera, e tanto o rio quanto a superfície vegetada atuam como fonte de CH4 para a atmosfera, com maior contribuição da superfície vegetada. As concentrações de metano e carbono na água foram superiores ás amostragens da atmosfera, o que já era esperado conforme os estudos existentes na literatura. / This thesis investigated the microclimate, CO2 and energy fluxes patterns at a forest in floodplain of Bananal Island, with emphasis on the seasonal flooding effects in atmospheric variables and ecosystem productivity, as well as estimates of evasive water CO2 and CH4 fluxes. To carry it out, micrometeorological eddy covariance technique was associated, vertical storage CO2 estimates and measured data in a micrometeorological tower from 2004 to 2014, as well as specific campaigns for evasive fluxes measures. Although there are welldefined seasonal cycles of precipitation, air temperature and humidity in the area controlled by the radiative offer, it does not directly explain the variations in evapotranspiration when seeking for explain it by the increase in energy availability. Partitioning of the available energy points to a latent heat flux domain compared to sensible heat flux during net radiation decay periods, showing a peculiar pattern not reported in the literature. The data air temperature, rainfall, eddy CO2 and energy fluxes (LE and H) showed a possible influence of droughts that occurred on the west side of the region, in this experimental site from the east. The years 2005 and 2010 were warmer, little rainy and drier than the other years of the data series, and in 2010 had the lowest net productivity of the dry season. The flood was shown to have an important role in CO2 streams, causing the gross productivity, ecosystem respiration and the net productivity decrease, adding to the effects expected by the radiative control. The net productivity responded to the effects of flooding weeks before this start in the tower, continuing its effects until a few weeks later, with decreasing productivity. Already ecosystem respiration and gross primary productivity proved to be more sensitive to early dry season, with an interruption in the decline attributed to flooding, probably due to favoring the decomposition of organic matter suspended in the water. The results of the carbon fluxes suggest a high CO2 assimilation by forest, which requires corroboration through biometric measurements and are not, however, ruled out the reliability of the results. The results of the campaign to evasive flux measurements showed that the river is a CO2 source to the atmosphere, and both the river and the vegetated surface act as a CH4 source to the atmosphere, with a greater contribution of the vegetated surface. Methane and carbon concentrations in the water were higher ace sampling the atmosphere, which was expected as existing studies in the literature.

Nesta tese investigou-se os padrões microclimáticos, de fluxos de energia e CO2 em uma floresta em planície de inundação da Ilha do Bananal, com ênfase nos efeitos da inundação sazonal nas variáveis atmosféricas e na produtividade do ecossistema, além de estimativas de fluxos aquáticos evasivos de CO2 e CH4. Para tanto, foram utilizadas técnicas micrometeorológicas de vórtices turbulentos, estimativas de armazenamento vertical de CO2 e dados medidos em uma torre micrometeorológica no período de 2004 a 2014, além de campanhas específicas para medidas de fluxos evasivos. Embora existam ciclos sazonais bem definidos de precipitação, temperatura do ar e umidade na região, controlados pela oferta radiativa, esta não explica diretamente as variações na evapotranspiração quando se busca explicá-la pelo aumento da disponibilidade energética. O particionamento da energia disponível aponta para um domínio do calor latente em comparação ao sensível durante períodos de decaimento do saldo de radiação, configurando um padrão peculiar não reportado na literatura. Os dados de temperatura do ar, precipitação pluviométrica, fluxos turbulentos de CO2 e fluxos energéticos (LE e H) mostraram uma possível influência das secas que ocorreram no lado oeste da região, também neste sítio experimental do leste. Os anos de 2005 e 2010 foram mais quentes, pouco chuvosos e mais secos que os demais anos da série de dados, e em 2010 ocorreu a menor produtividade líquida da estação seca. A inundação mostrou ter um papel importante nos fluxos de CO2, fazendo com que a produtividade bruta, a respiração do ecossistema e a produtividade líquida diminuam, somando-se os efeitos esperados pelo controle radiativo. A produtividade líquida respondeu aos efeitos da inundação semanas antes desta iniciar na torre, persistindo seus efeitos até algumas semanas depois, com a diminuição da produtividade. Já a respiração do ecossistema e a produtividade primária bruta mostraram ser mais sensíveis ao início da estação seca, com uma interrupção no declínio atribuído à inundação, provavelmente devido ao favorecimento da decomposição de matéria orgânica suspensa na água. Os resultados dos fluxos de carbono sugerem uma alta assimilação de CO2 pela floresta, o que requer corroboração através de medidas biométricas, não sendo, contudo, descartada a confiabilidade dos resultados. Os resultados da campanha para medidas de fluxos evasivos mostraram que o rio é uma fonte de CO2 para a atmosfera, e tanto o rio quanto a superfície vegetada atuam como fonte de CH4 para a atmosfera, com maior contribuição da superfície vegetada. As concentrações de metano e carbono na água foram superiores ás amostragens da atmosfera, o que já era esperado conforme os estudos existentes na literatura. / This thesis investigated the microclimate, CO2 and energy fluxes patterns at a forest in floodplain of Bananal Island, with emphasis on the seasonal flooding effects in atmospheric variables and ecosystem productivity, as well as estimates of evasive water CO2 and CH4 fluxes. To carry it out, micrometeorological eddy covariance technique was associated, vertical storage CO2 estimates and measured data in a micrometeorological tower from 2004 to 2014, as well as specific campaigns for evasive fluxes measures. Although there are welldefined seasonal cycles of precipitation, air temperature and humidity in the area controlled by the radiative offer, it does not directly explain the variations in evapotranspiration when seeking for explain it by the increase in energy availability. Partitioning of the available energy points to a latent heat flux domain compared to sensible heat flux during net radiation decay periods, showing a peculiar pattern not reported in the literature. The data air temperature, rainfall, eddy CO2 and energy fluxes (LE and H) showed a possible influence of droughts that occurred on the west side of the region, in this experimental site from the east. The years 2005 and 2010 were warmer, little rainy and drier than the other years of the data series, and in 2010 had the lowest net productivity of the dry season. The flood was shown to have an important role in CO2 streams, causing the gross productivity, ecosystem respiration and the net productivity decrease, adding to the effects expected by the radiative control. The net productivity responded to the effects of flooding weeks before this start in the tower, continuing its effects until a few weeks later, with decreasing productivity. Already ecosystem respiration and gross primary productivity proved to be more sensitive to early dry season, with an interruption in the decline attributed to flooding, probably due to favoring the decomposition of organic matter suspended in the water. The results of the carbon fluxes suggest a high CO2 assimilation by forest, which requires corroboration through biometric measurements and are not, however, ruled out the reliability of the results. The results of the campaign to evasive flux measurements showed that the river is a CO2 source to the atmosphere, and both the river and the vegetated surface act as a CH4 source to the atmosphere, with a greater contribution of the vegetated surface. Methane and carbon concentrations in the water were higher ace sampling the atmosphere, which was expected as existing studies in the literature.

The productivity of agricultural and forest ecosystems in regions at higher latitudes is to a large extent governed by low temperature and moisture conditions. Environmental conditions are acting both above- and below-ground and regulating carbon fluxes and evapotranspiration. However, the understanding of various feedbacks between vegetation and environmental conditions is still unclear. In this thesis, two studies were conducted to understand the physical and biological processes. In the first study, the aim was to simulate soil temperature and moisture dynamics in the bare soil with seasonal frost conditions in China. In the second study, the aims were to model seasonal courses of carbon and evapotranspiration and to examine the responses of photosynthesis, transpiration and respiration on environmental conditions in a boreal Scots pine ecosystem in Finland. In both studies the CoupModel was applied to simulate the dynamic responses of the systems. Both sites represented investigations from which a high number of measurements were available. To understand to what extent the data could be used to increase the understanding of the systems, the Generalized Likelihood Uncertainty Estimation (GLUE) was applied. The GLUE method was useful to reduce basic uncertainties with respect to parameter ranges, model structures and measurements. The strong interactions between soil temperature and moisture processes have indicated by a few behavioral models obtained when constrained by combined temperature and moisture criteria. Model performance on sensible and latent heat fluxes and net ecosystem exchange (NEE) also indicated the coupled processes within the system. Seasonal and diurnal courses were reproduced successfully with reduced parameter ranges. However, uncertainties on what is the most general regulation for transpiration and NEE are still unclear and need further systematic investigations. / QC 20101206

Les zones côtières ne sont prises en compte dans les budgets globaux de CO2 atmosphérique que depuis peu. Il s’avère que bien qu’elles ne représentent globalement que de faibles superficies, les flux de carbone et de nutriments y sont très significatifs à l’échelle globale. On sait peu de chose sur le comportement des écosystèmes lagunaires vis-à-vis du CO2 et, encore moins des zones intertidales où les échanges avec l’atmosphère ont lieu alternativement avec l’eau et le sédiment. Les objectifs de cette étude ont été d’une part, d’établir le bilan de carbone échangé entre la lagune d’Arcachon, l’atmosphère et le milieu terrestre, et d’autre part de mettre en relation ces flux avec la production nette de l’écosystème (NEP) afin de mieux caractériser le statut métabolique de celle-ci ainsi que les facteurs environnementaux clés. Pour cela, nous avons mis en place pour la première fois et à différentes saisons et stations, des mesures directes de flux de CO2 par Eddy Corrélation, une méthode fonctionnant en continu pendant l’immersion et l’émersion. En parallèle, les apports de carbone terrestre sous ses différentes formes ont été quantifiés par un suivi annuel sur 9 rivières alimentant la lagune. L’export total de carbone par le bassin versant à travers les eaux de surface des rivières est estimé à 116 t C km-2 an-1 dont 39% est exporté à la lagune sous forme organique dissoute (DOC) du fait de la prédominance de podzols dans le bassin versant. La forte minéralisation de la matière organique terrestre dans les sols et eaux souterraines sursature largement les eaux en CO2 et l’export sous forme de carbone inorganique dissoute (DIC) représente environ 21%. La formulation d’un modèle mathématique, le « StreamCO2-DEGAS », basé sur les mesures de pCO2, de concentrations et de compositions isotopiques en DIC a permis de montrer que 43% de l’export total de carbone était dégazé sous forme de CO2 depuis les rivières vers l’atmosphère, réduisant alors le flux net entrant dans la lagune à 66 t C km-2 an-1. Concernant la mesure de flux verticaux, l’analyse cospectrale ainsi que les résultats obtenus en adéquation avec les contrôles physiques et biologiques aux différentes échelles tidale, diurne et saisonnières, ont permis de valider la méthode de l’Eddy Covariance en zone intertidale. Sur l’ensemble de la période de mesures, les flux de CO2 étaient faibles, variant entre -13 et 19 µmol m-2 s-1. Des puits de CO2 atmosphérique à marée basse le jour ont été systématiquement observés. Au contraire, pendant l’immersion et à marée basse la nuit, des flux positifs ou négatifs ou proche de zéro ont été observés suivant la saison et la station étudiées. L’analyse concomitante des flux de CO2 et des images satellites du platier à marée basse le jour a clairement permis de discriminer l’importance relative des deux cycles métaboliques distincts des principaux producteurs primaires avec (1) les herbiers de Zostera noltii à cycle annuel long, dominant la NEP en été et en automne à la station la plus centrale et (2) les communautés microphytobenthiques, dominant la production primaire brute (PPB) au printemps à la même station et en automne au fond du bassin. Un recyclage rapide de cette production durant l’immersion et l’émersion a aussi clairement été mis évidence. Au vue des différents résultats, la technique d’Eddy Covariance utilisée en zone intertidale laisse envisager d’intéressantes perspectives en termes de connaissances sur les budgets de carbone et les processus écologiques et biogéochimiques dans la zone côtière. / The coastal zone is only taken into account since recently in global carbon budgeting efforts. Although covering globally modest surface areas, carbon and nutrient fluxes in the coastal zone appear significant at the global scale. However, little is known about the CO2 behaviour in lagoons and even less in intertidal zones where exchanges with the atmosphere occur alternatively with the water and the sediment. The purposes of this work are, on one hand, to establish the carbon budget between the Arcachon lagoon, the atmosphere and the terrestrial watershed and on the other hand, to link these fluxes with the net ecosystem production (NEP) and better characterize its metabolic status along with the relevant environmental factors. For the first time, CO2 flux measurements by Eddy Correlation have been carried out at different seasons and stations in the tidal flat. In parallel, the total terrestrial carbon export from river waters has been quantified throughout a complete hydrological cycle in nine watercourses flowing into the lagoon. The total carbon export from the watershed through surface river waters is estimated at 116 t C km-2 yr-1 on which 39% is exported to the lagoon as dissolved organic carbon (DOC) owing to the predominance of podzols in the watershed. Intense organic matter mineralization in soils and groundwaters largely over-saturate river waters in CO2 on which export accounts for 21% as dissolved inorganic carbon (DIC). The mathematical “StreamCO2-DEGAS” model formulation based on water pCO2, DIC concentrations and isotopic composition measurements permits to show that 43% of the total carbon export was degassed as CO2 from the riverine surface waters to the atmosphere, lowering then this latter to 66 t C km-2 yr-1. With respect to the CO2 flux measurements in the lagoon, cospectral analysis and the well accordance of results with physical and biological controls at the tidal, diurnal and seasonal time scales permit to validate the Eddy Correlation technique over tidal coastal zone. CO2 fluxes with the atmosphere, during each period, were generally weak and ranged between -13 and 19 µmol m-2 s-1. Low tide and daytime conditions were always characterized by an uptake of atmospheric CO2. In contrast, during the immersion and during low tide at night, CO2 fluxes where either positive or negative, or close to zero, depending on the season and the site. The concomitant analysis of CO2 fluxes with satellite images of the lagoon at low tide during the day clearly discriminate the relative importance of the two distinct metabolic carbon cycling involving the main primary producers, i.e. (1) the Zostera noltii seagrass meadow predominance on the NEP in autumn and summer in the more central station, with an annual cycling and (2) the microphytobenthos community predominance on the gross primary production (GPP) in spring at the same station and in autumn in the inner part of the bay where a rapid carbon cycling during the immersion and the emersion was clearly highlighted. The different results obtained with the Eddy Correlation technique over tidal flats opens interesting perspectives on the knowledge of the carbon budget and the biogeochemical and ecological processes within the coastal zone.