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DECODING THE TRANSCRIPTIONAL LANDSCAPE OF TRIPLE-NEGATIVE BREAST CANCER USING NEXT GENERATION WHOLE TRANSCRIPTOME SEQUENCINGRadovich, Milan 16 March 2012 (has links)
Indiana University-Purdue University Indianapolis (IUPUI) / Triple-negative breast cancers (TNBCs) are negative for the expression of estrogen (ER), progesterone (PR), and HER-2 receptors. TNBC accounts for 15% of all breast cancers and results in disproportionally higher mortality compared to ER & HER2-positive tumours. Moreover, there is a paucity of therapies for this subtype of breast cancer resulting primarily from an inadequate understanding of the transcriptional differences that differentiate TNBC from normal breast. To this end, we embarked on a comprehensive examination of the transcriptomes of TNBCs and normal breast tissues using next-generation whole transcriptome sequencing (RNA-Seq). By comparing RNA-seq data from these tissues, we report the presence of differentially expressed coding and non-coding genes, novel transcribed regions, and mutations not previously reported in breast cancer. From these data we have identified two major themes. First, BRCA1 mutations are well known to be associated with development of TNBC. From these data we have identified many genes that work in concert with BRCA1 that are dysregulated suggesting a role of BRCA1 associated genes with sporadic TNBC. In addition, we observe a mutational profile in genes also associated with BRCA1 and DNA repair that lend more evidence to its role. Second, we demonstrate that using microdissected normal epithelium maybe an optimal comparator when searching for novel therapeutic targets for TNBC. Previous studies have used other controls such as reduction mammoplasties, adjacent normal tissue, or other breast cancer subtypes, which may be sub-optimal and have lead to identifying ineffective therapeutic targets. Our data suggests that the comparison of microdissected ductal epithelium to TNBC can identify potential therapeutic targets that may lead to be better clinical efficacy. In summation, with these data, we provide a detailed transcriptional landscape of TNBC and normal breast that we believe will lead to a better understanding of this complex disease.
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Energetic and dynamic characterization of the IgA1:FcαRI interaction reveals long-range conformational changes in IgA1 upon receptor bindingPosgai, Monica Therese January 2012 (has links)
No description available.
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Estimating the Difference of Percentiles from Two Independent Populations.Tchouta, Romual Eloge 12 August 2008 (has links) (PDF)
We first consider confidence intervals for a normal percentile, an exponential percentile and a uniform percentile. Then we develop confidence intervals for a difference of percentiles from two independent normal populations, two independent exponential populations and two independent uniform populations. In our study, we mainly focus on the maximum likelihood to develop our confidence intervals. The efficiency of this method is examined via coverage rates obtained in a simulation study done with the statistical software R.
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YSCAT Backscatter DistributionsBarrowes, Benjamin E. 14 May 2003 (has links) (PDF)
YSCAT is a unique ultrawideband microwave scatterometer developed to investigate the sea surface under a variety of environmental and radar parameters. The YSCAT94 experiment consisted of a six month deployment on the WAVES research tower operated by the Canada Center for inland Waters (CCIW). Over 3500 hours of data were collected at 2Γ 3.05Γ 5.3Γ 10.02Γ and 14 GHz and at a variety of wind speeds, relative azimuth angles, and incidence angle.
A low wind speed "rolloff" of the normalized radar cross section (σ°) in YSCAT94 data is found and quantified. The rolloff wind speedΓ γΓ is estimated through regression estimation analysis using an Epanechnikov kernel. For YSCAT94 data, the rolloff is most noticeable at mid-range incidence angles with γ values ranging from 3 to 6 m/s.
In order to characterized YSCAT94 backscatter distributions, a second order polynomial in log space is developed as a model for the probability of the radar cross sectionΓρ(σ°). Following Gotwols and ThompsonΓρ(σ°) is found to adhere to a log-normal distribution for horizontal polarization and a generalized log-normal distribution for vertical polarization. If ρ(α|σ°) is assumed to be Rayleigh distributed, the instantaneous amplitude distribution ρ(α) is found to be the integral of a Rayleigh/generalized log-normal distribution.
A robust algorithm is developed to fit this probability density function to YSCAT94 backscatter distributions. The mean and variance of the generalized log-normal distribution are derived to facilitate this algorithm. Over 2700 distinct data cases sorted according to five different frequencies, horizontal and vertical polarizations, upwind and downwind, eight different incidence angles Γ1-10 m/s wind speeds, and 0.1-0.38 mean wave slope are considered. Definite trends are recognizable in the fitted parameters a1Γ a2Γ and C of the Rayleigh/generalized log-normal distribution when sorted according to wind speed and mean wave slope.
At mid-range incidence angles, the Rayleigh/generalized log-normal distribution is found to adequately characterize both low and high amplitude portions of YSCAT94 backscatter distributions. However, at higher incidence angels (50°and 60°) the more general Weibull/generalized log-normal distributions is found to better characterized the low amplitude portion of the backscatter distributions.
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Three Pension Cost Methods under Varying AssumptionsGrizzle, Linda S. 13 June 2005 (has links) (PDF)
A pension plan administrator promises certain benefits in the future in exchange for labor today. In order to budget for this expense and create more security for the participant, the administrator uses a pension cost method. Each cost method assigns a portion of the future liability to the current year. This is called the normal cost. We calculate the normal cost under three cost methods using different annuity, interest and inflation assumptions. Then we make comparisons between cost methods as well as between assumption changes. The cost methods considered in this paper are the unit credit cost method, projected unit credit cost method, and the entry age cost method. Both the constant dollar and the constant percent versions of the entry age cost method are considered.
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Who Let YOU In Here? Social Class, Sitcoms and The New NormalDePasquale, Diana 05 November 2012 (has links)
No description available.
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Effect of human papillomavirus 16 immortalization on retinoic acid regulation of epidermal growth factor responsiveness and differentiation of normal ectocervical epithelial cellsSizemore, Nywana January 1995 (has links)
No description available.
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Liquid Crystal Displays for Pixelated Glare Shielding EyewearHurley, Shawn Patrick 19 July 2010 (has links)
No description available.
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Hydrothermal Circulation During Slip on the Mohave Wash Fault, ChemehueviMountains, SE CA: Oxygen Isotope ConstraintsMacDonald, Cody J. 24 September 2014 (has links)
No description available.
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Use Of Web-Based Lessons Of Statistical Concepts With Graphics And Animation To Enhance The Effectiveness Of LearningPillala, Lavanya 26 March 2010 (has links)
No description available.
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