Techn. Univ., Diss.--Braunschweig, 1995.

Thesis (Doctoral)--Technische Universität Carolo-Wilhelmina zu Braunschweig, 1983.

Semi-synthetic β-lactam antibiotics are the most prescribed class of antibiotics in the world. Chemical coupling of a β-lactam moiety with an acyl side chain has dominated the industrial production of semi-synthetic β-lactam antibiotics since their discovery in the early 1960s. Enzymatic coupling of a β-lactam moiety with an acyl side chain can be accomplished in a process that is much more environmentally benign but also results in a much lower yield. The goal of the research presented in this dissertation is to improve the enzymatic synthesis of β-lactam antibiotics via reaction engineering, medium engineering and data-drive protein engineering. Reaction engineering was employed to demonstrate that the hydrolysis of penicillin G to produce the β-lactam nucleus 6-aminopenicillanic acid (6-APA), and the synthesis of ampicillin from 6-APA and (R)-phenylglycine methyl ester ((R)-PGME), can be combined in a cascade conversion. In this work, penicillin G acylase (PGA) was utilized to catalyze the hydrolysis step, and PGA and α-amino ester hydrolase (AEH) were both studied to catalyze the synthesis step. Two different reaction configurations and various relative enzyme loadings were studied. Both configurations present a promising alternative to the current two-pot set-up which requires intermittent isolation of the intermediate, 6-APA. Medium engineering is primarily of interest in β-lactam antibiotic synthesis as a means to suppress the undesired primary and secondary hydrolysis reactions. The synthesis of ampicillin from 6-APA and (R)-PGME in the presence of ethylene glycol was chosen for study after a review of the literature. It was discovered that the transesterification product of (R)-PGME and ethylene glycol, (R)-phenylglycine hydroxyethyl ester, is transiently formed during the synthesis reactions. This never reported side reaction has the ability to positively affect yield by re-directing a portion of the consumption of (R)-PGME to an intermediate that could be used to synthesize ampicillin, rather than to an unusable hydrolysis product. Protein engineering was utilized to alter the selectivity of wild-type PGA with respect to the substituent on the alpha carbon of its substrates. Four residues were identified that had altered selectivity toward the desired product, (R)-ampicillin. Furthermore, the (R)-selective variants improved the yield from pure (R)-PGME up to 2-fold and significantly decreased the amount of secondary hydrolysis present in the reactions. Overall, we have expanded the applicability of PGA and AEH for the synthesis of semi-synthetic β-lactam antibiotics. We have shown the two enzymes can be combined in a novel one-pot cascade, which has the potential to eliminate an isolation step in the current manufacturing process. Furthermore, we have shown that the previously reported ex-situ mixed donor synthesis of ampicillin for PGA can also occur in-situ in the presence of a suitable side chain acyl donor and co-solvent. Finally, we have made significant progress towards obtaining a selective PGA that is capable of synthesizing diastereomerically pure semi-synthetic β-lactam antibiotics from racemic substrates.

Today, the availability of methods for the activity-preserving and cost-efficient downstream processing of enzymes forms a major bottleneck to the use of these valuable tools in technical processes. A promising technology appears to be foam fractionation, which utilizes the adsorption of proteins at a gas–liquid interface. However, the employment of surfactants and the dependency of the applicability on individual properties of the target molecules are considerable drawbacks. Here, we demonstrate that a reversible fusion of the large, surface-active protein Ranaspumin-2 (Rsn-2) to a β-lactamase (Bla) enabled both surfactant-free formation of a stable foam and directed enrichment of the enzyme by the foaming. At the same time, Bla maintained 70% of its catalytic activity, which was in stark contrast to the enzyme without fusion to Rsn-2. Rsn-2 predominantly mediated adsorption. Comparable results were obtained after fusion to the structurally more complex penicillin G acylase (PGA) as the target enzyme. The results indicate that using a surface-active protein as a fusion tag might be the clue to the establishment of foam fractionation as a general method for enzyme downstream processing.

For a sustainable future, there is a call to increase the market share of bio-based technologies and materials. Microbial-based technologies have the potential and the ability to contribute substantively on many levels to global efforts to achieve sustainability. Development and utilization of microbial technologies is, however, an extensive process involving numerous steps, including the discovery of novel technologies and the development of industrially viable production systems. In the presented thesis, individual steps of microbial biotechnology development were addressed. In the first part of the study, a variety of methodological approaches were employed in order to study the effect of the anthropogenic activity (i.e., decades lasting production of penicillin G) on the structure of soil microbial communities. Moreover, both cultivable and non-cultivable fractions of populations were subjected to functional screening in order to unravel the biotechnological potential of the microorganisms in terms of production of enzymes involved in biotransformation of beta-lactam antibiotics: penicillin G acylase (PGA) and alpha amino acid ester hydrolase (AEH). Our results indicated that the impacted communities harbour a microbial community with increased diversity and richness. However, on the...

Protein engineering can be performed by combinatorial techniques (directed evolution) and data-driven methods using machine-learning algorithms. The main characteristic of directed evolution (DE) is the application of an effective and efficient screen or selection on a diverse mutant library. As it is important to have a diverse mutant library for the success of DE, we compared the performance of DNA-shuffling and recombination PCR on fluorescent proteins using sequence information as well as statistical methods. We found that the diversity of the libraries DNA-shuffling and recombination PCR generates were dependent on type of skew primers used and sensitive to nucleotide identity levels between genes. DNA-shuffling and recombination PCR produced libraries with different crossover tendencies, suggesting that the two protocols could be used in combination to produce better libraries. Data-driven protein engineering uses sequence, structure and function data along with analyzed empirical activity information to guide library design. Boolean Learning Support Vector Machines (BLSVM) to identify interacting residues in fluorescent proteins and the gene templates were modified to preserve interactions post recombination. By site-directed mutagenesis, recombination and expression experiments, we validated that BLSVM can be used to identify interacting residues and increase the fraction of active proteins in the library. As an extension to the above experiments, DE was applied on monomeric Red Fluorescent Proteins to improve its spectral characteristics and structure-guided protein engineering was performed on penicillin G acylase (PGA), an industrially relevant catalyst, to change its substrate specificity.

Made available in DSpace on 2016-06-02T19:55:33Z (GMT). No. of bitstreams: 1 4561.pdf: 2229870 bytes, checksum: e51008e96773b0184eb28a316cf86d57 (MD5) Previous issue date: 2012-04-27 / Financiadora de Estudos e Projetos / Penicillin G acylase (PGA, E.C.3.5.1.11) from Escherichia coli is an enzyme of great industrial importance, widely used for the hydrolysis of penicillin G, producing the 6-aminopenicillanic acid (6-APA), which is a key molecule for the synthesis of semi-synthetic penicillins. Among them, amoxicillin has a broad spectrum of activity against a variety of bacteriological infections. Industrially, amoxicillin is produced by chemical processes, which require drastic reaction conditions, several steps of protection and deprotection of reactive groups in order to prevent non-selective hydrolytic reactions, use of organochloride solvents with non-recyclable waste generation, which are toxic and harmful to the environment. The enzymatic synthesis is a more attractive alternative from the environmental point of view and economic. The tendency of the pharmaceutical industry is the development of enzymatic methods to produce these β-lactam semi-synthetic antibiotics, including amoxicillin. Nevertheless, a major obstacle to its industrial implementation is the limited yield, as a consequence of undesirable hydrolytic side-reactions, which lead to the formation of the by-product (p-hydroxyphenylglycine, POHPG) throughout the course of the reaction. This drawback can be partially avoided by reducing the water activity (aw) in the medium. For this purpose, ionic liquids (ILs) have emerged as an alternative to conventional organic media due to their high thermal and chemical stability, non-flammability, easy recycling, and negligible vapor pressure. Within this context, this work researched the development of an integrated green process for the recovery, reuse and recycle of the by-product (POHPG) of the kinetically controlled enzymatic synthesis of amoxicillin, employing PGA immobilized on Sepabeads® in a totally aqueous medium reaction (sodium phosphate buffer 100 mM, pH 6.5), and assessed the catalytic activity of this biocatalyst in the presence of different ILs as cosolvents for these synthetic reactions, in terms of selectivity (synthesis/hydrolysis, S/H ratio) and conversion of the substrate 6-aminopenicillanic acid (6-APA). The recovery of the by-product (POHPG) of the kinetically controlled enzymatic synthesis of amoxicillin in a totally aqueous reaction medium was done efficiently, achieving a final purity of 99% for the POHPG, which was successfully reused for the production of the substrate p-hydroxyphenylglycine ethyl ester (POHPGEE), achieving a conversion of 93%. Then, POHPGEE was recycled to the reactor (without any further purification) for another batch of enzymatic synthesis of amoxicillin, following the characteristic profile that is expected for these synthetic reactions. This integrated green process generated sodium chloride (NaCl) as waste, which is an inert and harmless salt. Moreover, the assessment of the use of ILs as cosolvents for the reactions of kinetically controlled enzymatic synthesis of amoxicillin presented promising results. An increase of 400% in the selectivity was observed for the reactions carried out in the presence of 1-butyl-3-methylimidazolium hexafluorophosphate (BMI.PF6), as cosolvent at a concentration of 75% (VIL/VWATER) in relation to the standard reaction performed in totally aqueous medium. Similarly, this figure reached more than 350% for reactions conducted in 1-butyl-3-methylimidazolium bis(trifluoromethylsulfonyl)imide (BMI.NTf2) at the same volume fraction, while for 1-butyl-3-methylimidazolium tetrafluoroborate (BMI.BF4) there was only a slight increase in selectivity (about 57%). The highest conversion of 6-APA was achieved using BMI.NTf2 as cosolvent at a concentration of 71% (VIL/VWATER), representing an increase of more than 36% compared to standard aqueous reaction. No deactivation of the enzyme was observed after the reactions in any of the ILs, and the physical integrity of the biocatalyst particles was entirely maintained. The results of this work collaborated for the advance in the study of the enzymatic synthesis of semi-synthetic penicillins through the use of technologies more green . / Penicilina G acilase (PGA, E.C.3.5.1.11) de Escherichia coli é uma enzima de grande importância industrial, amplamente utilizada para a hidrólise de penicilina G, produzindo o ácido 6-aminopenicilânico (6-APA), que é uma molécula chave para a síntese de penicilinas semi-sintéticas, dentre elas, a amoxicilina, que possui um amplo espectro de ação contra uma variedade de infecções bacteriológicas. Industrialmente, a amoxicilina é produzida por meio de processos químicos, os quais requerem condições drásticas de reação, diversos passos de proteção e desproteção de grupos reativos para impedir reações hidrolíticas não seletivas, utilização de solventes organoclorados com geração de resíduos não recicláveis, que são tóxicos e nocivos ao meio ambiente. A síntese enzimática é uma alternativa mais interessante do ponto de vista ambiental e econômico. A tendência da indústria farmacêutica é o desenvolvimento de métodos enzimáticos para a produção destes antibióticos β-lactâmicos semi-sintéticos, incluindo a amoxicilina. Entretanto, um dos principais impedimentos para a sua implementação industrial é o rendimento limitado, em decorrência de reações laterais de hidrólise indesejáveis, que levam à formação do subproduto (p-hidroxifenilglicina, POHFG) durante todo o andamento da reação. Este inconveniente pode ser parcialmente evitado reduzindo a atividade da água (aw) no meio. Para esta finalidade, os líquidos iônicos (LIs) surgiram como uma alternativa aos meios orgânicos convencionais, devido à sua elevada estabilidade térmica e química, não inflamabilidade, fácil reciclagem e pressão de vapor desprezível. Neste contexto, este trabalho pesquisou o desenvolvimento de um processo integrado verde para a recuperação, reutilização e reciclo do subproduto (POHFG) da síntese enzimática cineticamente controlada de amoxicilina, empregando PGA imobilizada em Sepabeads® em um meio de reação totalmente aquoso (tampão fosfato de sódio 100 mM, pH 6,5), e avaliou a atividade catalítica deste biocatalisador na presença de diferentes LIs como cossolventes para estas reações sintéticas, em termos de seletividade (síntese/hidrólise, relação S/H) e conversão do substrato ácido 6-aminopenicilânico (6-APA). A recuperação do subproduto (POHFG) da síntese enzimática cineticamente controlada de amoxicilina em meio totalmente aquoso foi realizada eficientemente, atingindo uma pureza final de 99% para a POHFG, a qual foi reutilizada com sucesso para a produção do substrato éster etílico da p-hidroxifenilglicina (EEPOHFG), atingindo uma conversão de 93%. Em seguida, o EEPOHFG foi reciclado ao reator (sem qualquer purificação adicional) para outra batelada de síntese enzimática de amoxicilina, seguindo o perfil característico que é esperado para estas reações sintéticas. Este processo integrado verde gerou como resíduo o sal cloreto de sódio (NaCl) que é inerte e inofensivo. Além disso, a avaliação da utilização de LIs como cossolventes para as reações de síntese enzimática cineticamente controlada de amoxicilina apresentou resultados promissores. Um acréscimo de 400% na seletividade foi observado para as reações realizadas na presença de hexafluorfosfato de 1-butil-3-metilimidazólio (BMI.PF6), como cossolvente na concentração de 75% (VLI/VÁGUA) em relação à reação padrão realizada em meio totalmente aquoso. De maneira similar, este número alcançou mais do que 350% para as reações conduzidas em bis(trifluormetilsulfonil)imida de 1-butil-3-metilimidazólio (BMI.NTf2) na mesma fração volumétrica, enquanto que para tetrafluorborato de 1-butil-3-metilimidazólio (BMI.BF4) houve apenas um ligeiro aumento na seletividade (cerca de 57%). A mais elevada conversão de 6-APA foi obtida empregando BMI.NTf2 como cossolvente na concentração de 71% (VLI/VÁGUA), representando um aumento de mais do que 36% em comparação à reação padrão aquosa. Nenhuma desativação da enzima foi observada após as reações em qualquer um dos LIs, e a integridade física das partículas do biocatalisador foi integralmente mantida. Os resultados deste trabalho colaboraram para o avanço no estudo da síntese enzimática de penicilinas semi-sintéticas através do emprego de tecnologias mais verdes .

Made available in DSpace on 2016-06-02T19:02:43Z (GMT). No. of bitstreams: 1 5706.pdf: 7869131 bytes, checksum: 3a35e736b3418ca357ef4fc2e657c0af (MD5) Previous issue date: 2013-10-16 / Universidade Federal de Minas Gerais / Enzymes are potent catalysts, but operationally fragile, expensive and soluble. Industrial applications of enzymes, often, are possible only using immobilized enzyme. Nowadays, various studies have been performed aiming to immobilize enzymes onto magnetic carriers, which allow the selective recovery of the derivative by applying an external magnetic field even in complex reaction media containing other suspended solids. There are many studies using magnetic carriers in enzymes immobilization procedures, however there are no commercially available enzymes immobilized onto magnetic materials. In these studies usually are used carriers with not ideal characteristics for applications in industrial processes. The present study aimed to develop new magnetic carriers and methods for immobilization of enzymes in these carriers, penicillin G acylase (PGA) and cellulases have been used as model enzymes. The thesis was divided into five parts, in the first part (Chapter 1) the state-of-art is presented. The second part (Chapter 2) describes the synthesis of magnetic carriers robust, cheap and with good characteristics for applications in bioprocesses. For this purpose were tested the synthesis of silica magnetic microparticles (SMMps) in water-in-oil micro-emulsion using sodium silicate as silica source and superparamagnetic iron oxide nanoparticles as magnetic core. Materials with good magnetic properties, high surface area and mesoporous structure were obtained. SMMps structure was characterized, it was possible to control the final structure of the material according to the synthesis conditions. In the third part of this study (Chapter 3) was evaluated a new concept in enzymes immobilization using magnetic materials. Magnetic tags were co-aggregated with PGA and cross-linked with glutaraldehyde, producing magnetic cross-linked enzymes aggregates (M-CLEAs). Several reaction conditions were tested producing M-CLEAs with different characteristics and strong response to external magnetic fields. Derivatives with good recovered activity and increased thermal and methanol 50% (v/v) stabilities were obtained. M-CLEAs presented superior performance, in comparison with the free enzyme, in penicillin G hydrolysis experiments, being reused for three reaction cycles without loss of activity. In the fourth part of this study (Chapter 4) the immobilization of the Trichoderma reesei cellulolytic complex onto 17 carriers using 60 different immobilization conditions was evaluated. Covalent methods to cellulases immobilization resulted in total loss of the enzymatic activity. The immobilization by adsorption allowed preserving a portion of the enzymatic activity, however, the enzyme was desorbed from the carrier with the increase in the ionic strength. The best results were achieved for adsorption in MANAE-agarose followed by cross-linking with glutaraldehyde. Hydrolysis experiments using insoluble substrates showed that it is possible to hydrolyze such substrates even using immobilized enzyme onto porous carriers. The derivative was reused for ten reaction cycles (hydrolysis of filter paper) saving more than 90% of its activity. Finally, in Chapter 5, the T. reesei cellulolytic complex was immobilized by adsorption onto SMMp activated with amino groups followed by glutaraldehyde cross-linking achieving good results in terms of recovered activity. / Enzimas são potentes catalisadores, porém frágeis operacionalmente, caras e solúveis. Aplicações industriais desses catalisadores, muitas vezes, são possíveis apenas com o uso de enzima imobilizada. Estudos indicam que o uso de suportes magnéticos para imobilizar enzimas pode permitir a recuperação seletiva do derivado através da aplicação de um campo magnético externo mesmo em meios complexos contendo outros sólidos em suspensão. Apesar de existirem muitos estudos empregando suportes magnéticos para imobilização de enzimas, não existem enzimas imobilizadas em materiais magnéticos disponíveis comercialmente. Nestes estudos geralmente são utilizados suportes magnéticos com características não ideais para aplicações em bioprocessos. O presente estudo teve como principal objetivo o desenvolvimento de novos suportes magnéticos e métodos para imobilização de enzimas nestes suportes, a enzima penicilina G acilase (PGA) e celulases foram utilizadas como modelo. O estudo foi dividido em cinco partes, no Capítulo 1 é apresentada uma introdução indicando o estado da arte. O Capítulo 2 apresenta o preparo de novos suportes magnéticos robustos, baratos e com características ótimas para aplicações em bioprocessos. Nesta etapa foi testada a síntese de micro-partículas magnéticas de sílica (SMMps) em micro-emulsão água-em-óleo, empregando silicato de sódio como fonte de sílica e nanopartículas superparamagnéticas de óxido de ferro como núcleo magnético. Os materiais obtidos apresentaram excelentes propriedades magnéticas, alta área de superfície e estrutura mesoporosa. A partir da caracterização físico-química e morfológica das SMMps foi possível controlar a estrutura final do material de acordo com as condições de síntese. No Capítulo 3 foi avaliado um novo conceito em imobilização de enzimas empregando materiais magnéticos. Neste estudo etiquetas magnéticas foram co-agregadas com PGA e entrecruzadas com glutaraldeído, gerando agregados enzimáticos entrecruzados com propriedades magnéticas (M-CLEAs). Várias condições reacionais foram testadas rendendo M-CLEAs com diferentes características e com resposta robusta a campos magnéticos externos. Derivados imobilizados com boa atividade recuperada e incremento na estabilidade térmica e frente a metanol 50% (v/v) foram obtidos. M-CLEAs apresentaram desempenho superior ao observado para a enzima livre em experimentos de hidrólise de penicilina G, sendo reutilizados por três ciclos reacionais sem perda de atividade. No Capítulo 4 foi avaliada a imobilização do complexo celulolítico de Trichoderma reesei em 17 suportes, empregando 60 diferentes condições de imobilização. Os experimentos de imobilização realizados empregando técnicas de imobilização por união covalente ocasionaram perda total de atividade enquanto métodos de imobilização por adsorção permitiram conservar boa atividade enzimática, porém a enzima dessorveu do suporte com o aumento na força iônica do meio. Os melhores resultados foram alcançados para adsorção em MANAE-agarose seguido de entrecruzamento com glutaraldeído. Experimentos de hidrólise de substratos insolúveis mostraram que é possível hidrolisar este tipo de substrato mesmo com enzima imobilizada em suportes porosos. O derivado foi reutilizado por dez ciclos (hidrólise de papel filtro) conservando mais de 90% de sua atividade. Por fim, no Capítulo 5, o complexo celulolítico de T. reesei foi imobilizado por adsorção em SMMp ativado com grupos amino seguido de entrecruzamento com glutaraldeído apresentando bons resultados em termos de atividade recuperada.

Made available in DSpace on 2016-06-02T19:55:23Z (GMT). No. of bitstreams: 1 2455.pdf: 1413452 bytes, checksum: 0d85e80e19b01ab27cd6e9dd30beb3b9 (MD5) Previous issue date: 2009-04-02 / Financiadora de Estudos e Projetos / The industrial production of 6-APA includes: (1) cultivation of Penicillium chrysogenum; (2) extraction with organic solvents, (3) crystallization; (4) penicillin hydrolysis by immobilized penicillin acylase; (5) extraction of phenyl acetic acid (AFA); (6) precipitation of 6-APA at its isoelectric point ( pH ~ 3,6). The scientific community and industry have interest in reducing the number of process steps required for 6-APA production. In this thesis a new method for 6-APA production is presented. In this process, the simultaneous production and hydrolysis of penicillin was carried out. The 6-APA was extracted from culture broth using ionic adsorbent. To demonstrate the technical viability of the process a suitable biocatalysts to perform the hydrolysis of penicillin in the complex media has been developed. The enzymatic extract, containing PGA was partially purified by affinity adsorption on agarose-tryptophan, it was necessary to prepare the biocatalyst. The apparent purification factor obtained was 4,5 and purified PGA was immobilized on agaroseglyoxil by multipoint covalent attachment. The biocatalysts obtained show stability under conditions of sterilization and application in bioreactor. However, their mechanical stability under vigorous conditions of agitation used in stirred tank bioreactors was not satisfactory. Three strategies were used to avoid fragmentation of the biocatalyst. The first strategy was to involve the impellers with a helicoidal structure. In this system the biocatalyst was maintained under agitation in external bulk of the apparatus. In the second strategy, the biocatalyst was introduced into the bioreactor as the biomass density reached a maximum, in this case, the cultivation was carried out under constant agitation speed (300 rpm). An airlift bioreactor was used as third strategy to maintain the pellet structure. These systems were efficient in increasing medium agitation without destroying the pellets. Complete hydrolysis of penicillin (30 g / L) was obtained after five days of cultivation and extraction of 6-APA on ionic exchanger was investigated. The extraction of 6-APA by ionic interaction using chitosan modified with glutaraldehyde and arginine is a good method for recovery it. However, optimization in this method is necessary to achieve the recovery of 6-APA at satisfactory levels for the pharmaceutical industry. The new method for production of 6-APA shows that is possible to eliminate the use of organic solvents and to reduce the number of process steps. / A produção industrial de ácido 6-aminopenicilânico (6-APA) inclui etapas de cultivo de Penicillium chrysogenum, extração com solvente orgânico, cristalização, hidrólise enzimática e precipitação. O interesse industrial e científico em reduzir o número de etapas deste processo tem motivado pesquisadores a buscar processos alternativos para obtenção de 6-APA. Neste trabalho, um novo processo é apresentado para a produção de 6-APA, cujas inovações envolvem a hidrólise de penicilina durante o cultivo de P. chrysogenum, a recirculação de ácido fenilacético (AFA) e extração de 6-APA ao final do cultivo utilizando adsorvente iônico. Para atender aos requerimentos do novo processo, foi desenvolvido um biocatalisador para atuar no complexo meio de cultivo. O preparo deste biocatalisador exigiu o uso de extrato enzimático purificado e uma metodologia para purificação de penicilina G acilase (PGA) foi investigada. Um fator de purificação aparente de 4,5 vezes foi obtido e a enzima foi ligada a agarose utilizando a técnica de imobilização covalente multipontual. O biocatalisador obtido apresentou boa estabilidade química em condições de esterilização e aplicação em biorreator. Entretanto, sua estabilidade mecânica sob condições rigorosas de agitação em biorreatores tipo tanque agitado e aerado não foram satisfatórias. Para solucionar este problema três estratégias foram avaliadas: (1) utilizando-se uma peça em forma de hélice envolvendo os impelidores, (2) adicionando-se o biocatalisador ao biorreator após a concentração de células atingir seu valor máximo e utilizando velocidade de agitação constante de 300 rpm, (3) usando um biorreator tipo air lift . As três estratégias permitiram manter a integridade do biocatallisador. Hidrólise completa de penicilina (30 g/L) foi obtida em 120 h de cultivo e a extração de 6-APA em coluna de troca iônica foi estudada. O método de extração de 6-APA através de interação iônica utilizando quitosana-arginina apresentou resultados promissores, entretanto, um aperfeiçoamento do método ainda faz-se necessário para atingir a recuperação de 6-APA em níveis satisfatórios para a indústria farmacêutica. Os resultados obtidos indicam que é possível eliminar o uso de solventes orgânicos na produção de 6-APA, além disso, a redução no número de etapas torna este processo mais simples e conseqüentemente reduz o tempo de produção e custo do produto final. Portanto, o processo desenvolvido neste trabalho é promissor para a aplicação na indústria farmacêutica.

Made available in DSpace on 2016-06-02T19:56:40Z (GMT). No. of bitstreams: 1 3187.pdf: 3659896 bytes, checksum: 975ac91a3eb67a4347c326de8f22bf8e (MD5) Previous issue date: 2010-03-31 / Universidade Federal de Minas Gerais / This master's thesis project aims at studying the dynamic optimization of the operation of a bench scale (up to 5L) automated, agitated and aerated bioreactor, where the semi-continuous cultivation of recombinant Pichia pastoris is run. This yeast was cloned using the PGK1 promoter, which precludes the use of methanol as inducer, expressing constitutively the enzyme penicillin G Acylase (PGA) from Bacillus megaterium. While the group of molecular biology of DEQUFSCar is working on cloning the PGA, d P. pastoris expressing the enzyme - amylase from Bacillus subtilis was cultivated. This clone, provided by prof. Fernando Torres, UnB, uses the same construction and, therefore, its kinetics of growth and production should be very similar to the PGA s. Cultivation of recombinant Pichia pastoris was performed in flasks (skaker) using standard culture medium, aiming at obtaining kinetic data, which are the starting point for the escalation to a benchtop bioreactor. Following that, tests were performed in a 5L bioreactor in batch and fed batch operation modes. With the bioreactor data , kinetic parameters of growth, to be further used in the simulations, were estimated, using a hybrid algorithm (which combines the global method Simulated Annealing, with the local one Levenberg- Marquardt). This algorithm, is implemented in Matlab and available in the software library of Ladabio (Laboratory of Development and Automation of Bioprocesses ). From these data, models of microbial growth and of production were developed, following a classic approach (unstructured, non-segregated). Computer simulations using different feeding strategies and employing these models allowed mapping the dynamics of the system. From this information, optimal control strategies were proposed to define optimal feeding profiles. Cellular concentrations of 5.4 g/L (dry weight) were reached in shaker (20h of cultivation, when glucose is exhausted), expressing 218 U/mL of -amylase, compared to 11.4 g/L (dry weight) that were achieved in cultures in a bioreactor in batch simple (10h of cultivation, when glucose is exhausted), expressing 156 U/mL of -amylase In fed-batch cultures, cell concentrations of up to 45 g/L were achieved, expressing up to 260 U/mL of - amylase, with a productivity of 5.2 U/mL/ h. In fed-batch cultures of P. pastoris expressing PGA, cell concentrations of up to 35 g/L were achieved. Enzyme activity was not detected in the culture broth due to the effect of glycosylation. Immunodetection reaction confirmed the expression of the recombinant enzyme. Four specific growth rate equations were adjusted, with different types of inhibition by one product, detected at significant levels by liquid chromatography highperformance, but not yet identified. This metabolite was added as an inhibitor in kinetic models, using the peak areas, normalized as a pseudoconcentration. The best fit to the experimental data were the Monod kinetic model with non-competitive inhibition. Typical values obtained for the maximum specific growth and glucose/ cell conversion factor in bioreactor were max=0,24 h-1 and YX/S = 0,48. Algorithm for optimal control in open loop was developed and successfully implemented, providing a robust profiles of great power, whose validation is proposed as a continuation of this work. / Este mestrado se propoe a estudar a otimizacao dinamica de biorreator automatizado, tipo tanque agitado e aerado, em escala de bancada (ate 5L), onde se processa o cultivo semi-continuo de Pichia pastoris recombinante. Essa levedura foi clonada pelo grupo do prof. Fernando Torres, da UnB, utilizando o promotor PGK1, que dispensa a utilizacao de metanol como indutor, expressando constitutivamente a enzima -amilase de Bacillus subtilis. Durante a execucao deste mestrado, a enzima penicilina G acilase (PGA) de Bacillus megaterium esta sendo clonada pelo grupo de biologia molecular do DEQ-UFSCar usando a mesma construcao e, portanto, a cinetica de crescimento e producao da PGA heterologa devera ser muito semelhante as da -amilase, utilizada como estudo de caso para otimizacao do bioprocesso. Cultivos de Pichia pastoris recombinante foram realizados em frascos agitados, utilizando meio de cultivo padrao, objetivando o levantamento de dados cineticos, ponto de partida para o escalonamento em biorreator de bancada. Posteriormente, foram realizados ensaios em biorreator de 5L, em batelada e batelada alimentada. Com os dados obtidos nos cultivos em biorreator, e utilizando algoritmo hibrido para estimativa de parametros (que combina o metodo global Simulated Annealing, com o local de Levenberg-Marquardt), implementado em MatLab e disponivel no LaDABio (Laboratorio de Desenvolvimento e Automacao de Bioprocessos), foram ajustados parametros cineticos de crescimento, para serem utilizados nas simulacoes dos cultivos em biorreator. A partir dai, foi desenvolvido modelo de crescimento microbiano e de producao, utilizando um enfoque classico (modelo nao-estruturado, nao-segregado) para descrever o sistema. Com isso, torna-se possivel realizar simulacoes em computador usando diferentes estrategias de alimentacao, para mapear a dinamica do sistema. A seguir, foram desenvolvidos algoritmos de controle otimo em malha aberta para definicao de estrategias de alimentacao. Concentracoes celulares de 5,4 g/L (massa seca) foram alcancadas em cultivos em camara rotatoria (20h de cultivo, quando se esgota a glicose), expressando 218 U/mL de -amilase, comparado com 11,4 g/L(massa seca) que foram atingidos em cultivos em biorreator em bateladas simples (10h de cultivo, quando se esgota a glicose), expressando 156 U/mL de -amilase. Em cultivos em batelada alimentada concentracoes celulares de ate 45 g/L foram atingidas, expressando ate 260 U/mL de -amilase, com uma produtividade de 5,2 U/mL/h. Em cultivo em batelada alimentada de P. pastoris expressando PGA, concentracoes celulares de ate 35 g/L foram atingidas. Nao foi detectada atividade enzimatica no caldo de cultivo devido ao efeito da glicosilacao. Reacao de imunodeteccao confirmou a expressao da enzima recombinante. Foram ajustadas quatro equacoes de velocidade especifica de crescimento, com diferentes tipos de inibicao por um produto, detectado em niveis importantes por cromatografia liquida de alto desempenho, mas ainda nao identificado. Esse metabolito foi inserido como inibidor nos modelos cineticos, utilizando as areas dos picos, normalizadas, como uma pseudoconcentracao. Os melhores ajustes aos dados experimentais foram com modelo cinetico de Monod com inibicao nao-competitiva. Valores tipicos obtidos para a velocidade especifica maxima de crescimento e de fator de conversao glicose/celula em biorreator foram max = 0,24 h-1 e YX/S = 0,48. Algoritmo de controle otimo em malha aberta foi desenvolvido e implementado com sucesso, prevendo de forma robusta perfis otimos de alimentacao, cuja validacao fica proposta como continuidade deste trabalho.