O estudo das interações planta-microrganismos tem sido de grande interesse ao longo dos últimos anos. Atualmente, as interações que ocorrem entre microrganismos que vivem em estreita relação também vêm merecendo grande atenção, pois forças competitivas e mutualísticas podem induzir a produção de novos metabólitos bioativos. Portanto, estudar interações existentes entre os microrganismos endofíticos que colonizam uma mesma planta parece ser uma estratégia promissora para a obtenção de substâncias quimicamente diferentes, eventualmente bioativas. Através da utilização de culturas mistas de microrganismos, o presente trabalho contribuiu para o conhecimento da relação existente entre os fungos endofíticos SS13 (Papulaspora immersa), SS50 (Fusarium oxysporum), SS67 (Nigrospora sphaerica), SS77 (Alternaria tenuissima) e SS84 (Phoma betae), isolados da planta medicinal Smallanthus sonchifolius (yacon), e sua implicação no aumento da diversidade química de produtos naturais microbianos, com o intuito de se identificar metabólitos secundários anticancerígenos. Para isso, os fungos foram cultivados em culturas singles e mistas em meios de cultivo líquidos e semi-sólidos. Foram utilizados diferentes meios de cultura, diferentes maneiras de se estabelecer o cultivo misto e diferentes formas de extração. Os extratos foram analisados química e biologicamente. Após fracionamento, foram isoladas cinco substâncias: afidicolina (I), 3-desóxi-afidicolina (II), estenfiperilenol (III), alterperilenol (IV) e alternariol monometil éter (V), sendo as duas primeiras de origem terpênica e as outras de origem policetídica. As substâncias I e II foram produzidas pelo fungo SS67, sendo que a produção de I aparentemente aumentou nas culturas mistas líquidas com SS13 e SS84, diminuindo consideravelmente na cultura mista com SS77. Devido à afidicolina ser um composto altamente citotóxico, os cultivos do fungo SS67 originaram extratos muito ativos frente aos ensaios de citotoxicidade em células cancerígenas. A substância III, primeiramente, só foi detectada por CLAE-DAD na cultura mista dos fungos SS67 e SS77, e a produção da substância IV foi maior nessa cultura mista que na cultura simples do fungo SS77 (meio fermentativo de extrato de malte). Provavelmente esses compostos foram produzidos por SS77 em resposta à presença de SS67. O extrato obtido durante esse cultivo misto foi o que apresentou maior atividade citotóxica frente à linhagem celular MDAMB-435 (câncer de mama). Posteriormente, a substância III foi também isolada da cultura simples do fungo SS77 cultivado em outras condições (meio fermentativo PDB), juntamente com a substância V. Os experimentos de antagonismo em placa de Petri envolvendo esses dois fungos revelaram, ainda, a presença de vários outros compostos na zona de inibição, que não correspondem às substâncias previamente isoladas de meio líquido, e podem ser responsáveis pelo efeito antagônico observado em meio semi-sólido. Os experimentos de atividade antagônica dos metabólitos produzidos pelos fungos evidenciaram que muitos compostos ativos, provavelmente, são produzidos em quantidades ínfimas, o que impossibilita a detecção por CLAE-DAD. Além disso, verificou-se que a substância I não possui atividade antifúngica significativa contra os fungos SS13, SS50 e SS77 e que a inibição de SS67 por SS77 ocorre devido à produção de compostos difusíveis em meio semi-sólido, e ainda, muito provavelmente, pela produção da substância III e IV em meio líquido, além de outros policetídeos. A produção de metabólitos secundários por fungos endofíticos deve ocorrer em consequência do papel ecológico que desempenham na natureza. Assim, a utilização de culturas mistas desses microrganismos deve induzir a produção de compostos que não seriam produzidos em condições não naturais. / The study of plant-microbe interactions has been of great interest over the past years. Currently, the interactions that occur among organisms that live in close relationship also have been receiving great attention because mutualistic and competitive forces may induce the production of new bioactive metabolites. Therefore, studying the interactions between endophytic microorganisms that colonize the same plant seems to be a promising strategy for obtaining chemically different substances that might also be bioactive. Through the utilization of mixed microbial cultures, this study contributed to knowledge of the relationship among the endophytic fungi SS13 (Papulaspora immersa), SS50 (Fusarium oxysporum), SS67 (Nigrospora sphaerica), SS77 (Alternaria tenuissima) and SS84 (Phoma betae), isolated from the medicinal plant Smallanthus sonchifolius (yacon), and its role in the increase of the chemical diversity of microbial natural products, in order to identify anticancer secondary metabolites. For this aim, the fungi were grown in single and mixed cultures, both in liquid and semi-solid media. Different media, different approaches to establish the mixed cultures and different extraction methods were used. The extracts were analyzed chemically and biologically. After the fractionation, five compounds were isolated: aphidicolin (I), 3-deoxy-aphidicolin (II), stemphyperylenol (III), alterperylenol (IV) and alternariol monomethyl ether (V). Compounds I and II are terpene derivatives, while III, IV and V are polyketide derivatives. The substances I and II were produced by the fungus SS67, and the production of I apparently increased in liquid mixed cultures with SS13 and SS84, decreasing considerably in mixed culture with SS77. Due to the high cytotoxic activity of aphidicolin (I), the cultures of the fungus SS67 originated extracts highly active in the cytotoxicity assays in cancer cells. Substance III was only detected by HPLC-DAD in the mixed culture between the fungi SS67 and SS77, and the production of compound IV was higher in this mixed culture when compared to the single culture of the fungus SS77 (malt extract medium). Probably these compounds were produced by SS77 in response to the presence of SS67. The extract obtained during this mixed culture showed the highest cytotoxic activity against the cell line MDAMB-435 (breast cancer). In a subsequent fermentation in PDB medium, compound III was also isolated from the single culture of the fungus SS77 grown, along with compound V. Additionally, antagonism experiments in Petri dishes with these two fungi revealed the presence of several other compounds in the inhibition zone, which does not correspond to the substances previously isolated from the liquid medium, and may be responsible for the antagonistic effect observed in semi-solid medium. The experiments of antagonistic activity of metabolites produced by fungi showed that many active compounds are probably produced in very small quantities, making it impossible to detect by HPLC-DAD. Moreover, it was found that aphidicolin (I) did not have significant antifungal activity against the fungi SS13, SS50 and SS77 and that the SS67 inhibition by SS77 is due to the production of diffusible compounds in semi-solid medium, and likely, due to the production of compound III and IV in liquid medium, and other polyketides. The production of secondary metabolites by endophytic fungi probably occurs as a result of the ecological role they play in nature. Thus, the use of mixed cultures of these microorganisms may induce the production of compounds that would not be produced under unnatural conditions.

Há uma simbiose quadripartida no ecossistema das formigas cultivadoras de fungos entre três mutualistas (Formiga da tribo Attini, jardim fúngico e actinomicetos simbiontes) e um parasita (fungo patogênico especializado Escovopsis sp). As actinobactérias associadas à formiga hospedeira produzem metabólitos secundários para inibir este patógeno, mas não o fungo mutualista. Produtos naturais interessantes foram relatados a partir destas bactérias com um amplo espectro de atividades biológicas. Portanto, várias actinobactérias foram isoladas do exoesqueleto e do jardim das formigas agricultoras para isolar compostos ativos contra diferentes alvos como Leishmania donovani e Escovopsis. Os antibióticos e compostos citotóxicos conhecidos griseorhodina A (1), griseorhodina C (2), griseorhodina G (3) e a dinactina (4) foram produzidos em cultivo sólido de ISP-2 por Streptomyces puniceus AB10, que foi isolada da formiga cortadeira Acromyrmex rugosus rugosus. As configurações absolutas de 1 e 2 foram inequivocamente estabelecidas como 6S,6aS,7S,8S e 6R,6aS,7S,8R, respectivamente, usando dicroísmo circular vibracional (VCD) e cálculos da Teoria do Funcional de Densidade (DFT). A bactéria Streptomyces puniceus AB10 produziu em meio-A líquido apenas uma familia de antibióticos como a dinactina (4). O composto 4 mostrou inibição contra Escovopsis e uma atividade maior contra L. donovani em promastigota e amastigota intracelular que a miltefosina. Dois estereoisômeros, strepchazolina A (5) e strepchazolina B (6), os antibióticos streptazolina (7), seu isômero-E (8), e o composto inorgânico octa-enxofre (9) foram produzidos em cultivo sólido de ISP-2 por Streptomyces chartreusis AC70, que foi isolada do jardim fúngico da formiga cortadeira Acromyrmex subterraneus brunneus. O composto 9 mostrou atividade antagonista contra o fungo patogênico especializado Escovopsis sp. Este é o primeiro relato de 8 como produto natural. As configurações absolutas de 5 e 6 foram inequivocamente estabelecida como 5S,6S,9R e 5S,6S,9S, respectivamente, usando dicroísmo circular vibracional (VCD) e cálculos da Teoria do Funcional de Densidade (DFT). A bactéria Candidatus Streptomyces philanthi ICBG292, isolada do exoesqueleto de operária de colônia de formiga Cyphomyrmex, produziu os antibióticos Mer-A2026B (10), piericidina-A1 (11) e nigericina (12). Os compostos 10-12 mostraram atividade contra Escovopsis sp e contra L. donovani. O composto 12 mostrou uma atividade maior contra L. donovani em promastigota e amastigota intracelular que a miltefosina. O composto 10 também foi ativo contra o fungo Trichoderma sp. Streptomyces sioyaensis ICBG311, isolada de machos alados de colônia de formiga Cyphomyrmex, produziu uma nova naftoquinona chamada cyphoquinona (13), dois novos compostos antifúngicos denominados cyphomycina (14) e epoxicyphomycina (15), e o antifúngico conhecido GT-35 (16). Os compostos 14-16 mostraram atividade contra diferentes linhagens de Escovopsis sp e Candida albicans K1 com MIC de 1.0, 0.5 e 0.25 ?g/mL, e uma atividade maior contra L. donovani em promastigota e amastigota intracelular que a miltefosina, enquanto 13 apresentou atividade baixa contra L. donovani. A cyphomycina (14) também mostrou uma potente atividade in vitro contra os patógenos humanos resistentes Aspergillus fumigatus 11628 (resistente à equinocandina), C. glabrata 4720 (resistente ao triazol), e C. auris B11211 (resistente à echinocandina, ao triazol, e à anfotericina B), com MIC de 0.5, 0.5 e 4 ?g/mL, respectivamente. Um estudo de dose única de cyphomycina (14) no modelo de camundongos neutropênicos de candidíase disseminada exibiu uma dose-resposta iv com um log de redução de 0.56 e 0.66 do carga infecciosa quando é tratado com 20 e 40 mg/kg da cyphomycina (14), respectivamente, e epoxicyphomycina (15) exibiu um log de redução de 0.53 com 40 mg/kg, demonstrando relevância clínica e eficácia de 14 e 15 neste modelo padrão da indústria de infecção por Candida. Por outro lado, GT-35 (16) matou os ratos 1 hora após a dose de 40 mg/kg. / There is a quadripartite symbiosis in the fungus-growing ant ecosystem between three mutualist (Attine ant, fungal garden and symbiotic actinomycetes) and one parasite (specialized pathogenic fungus Escovopsis sp). The actinobacteria associated to the ant host produce secondary metabolites to inhibit this pathogen but not the crop fungus. Interesting natural products have been reported from these bacteria with a wide spectrum of biological activities. In this thesis, several actinobacteria were isolated from the exoskeleton and garden of fungus-growing ants to isolate active compounds against different targets such as Leishmania donovani and Escovopsis. The known antibiotic and cytotoxic compounds griseorhodin A (1), griseorhodin C (2), griseorhodin G (3) and dinactin (4) were produced in solid ISP-2 culture by Streptomyces puniceus AB10, which was isolated from the leaf-cutter ant Acromyrmex rugosus rugosus. The absolute configurations of 1 and 2 were unambiguously established as 6S,6aS,7S,8S and 6R,6aS,7S,8R, respectively, using vibrational circular dichroism (VCD) and density functional theory (DFT) calculations. The bacterium Streptomyces puniceus AB10 produced in broth A-medium only one family of antibiotics as dinactin (4). Compound 4 showed inhibition against Escovopsis and a higher activity against L. donovani promastigotes and intracellular amastigotes than miltefosine. Two stereoisomers strepchazolin A (5) and strepchazolin B (6), the antibiotic streptazolin (7), its E-isomer (8), and the inorganic compound cyclooctasulfur (9) were produced in solid ISP-2 culture by Streptomyces chartreusis AC70, which was isolated from the fungal garden of the leaf-cutter ant Acromyrmex subterraneus brunneus. Compound 9 showed antagonist activity against the specialized pathogenic fungus Escovopsis sp. This is the first report of 8 as natural product. The absolute configurations of 5 and 6 were unambiguously established as 5S,6S,9R and 5S,6S,9S, respectively, using vibrational circular dichroism (VCD) and density functional theory (DFT) calculations. The bacterium Candidatus Streptomyces philanthi ICBG292, isolated from the exoskeleton of a worker of a Cyphomyrmex colony, produced the antibiotics Mer-A2026B (10), piericidin-A1 (11) and nigericin (12). Compounds 10-12 showed activity against Escovopsis sp and against L. donovani. Compound 12 showed higher activity against L. donovani promastigotes and intracellular amastigotes than miltefosine. Compound 10 was also active against the fungus Trichoderma sp. Streptomyces sioyaensis ICBG311, isolated from winged male ants of Cyphomyrmex colonies, produced a new naphtoquinone named cyphoquinone (13), two new antifungal compounds named cyphomycin (14) and epoxycyphomycin (15), and the known antifungal GT-35 (16). Compounds 14-16 displayed activity against several strains of Escovopsis sp and Candida albicans K1 with a MIC of 1.0, 0.5 and 0.25 ?g/mL, and a higher activity against L. donovani promastigotes and intracellular amastigotes than miltefosine, while 13 a weak activity against L. donovani. Cyphomycin (14) also showed potent in vitro activity against the resistant human pathogens Aspergillus fumigatus 11628 (echinocandin resistance), C. glabrata 4720 (triazole resistance), and C. auris B11211 (echinocandin, triazole, and amphotericin B resistance), with MIC of 0.5, 0.5 and 4 ?g/mL, respectively. A single-dose study of cyphomycin (14) in a neutropenic mouse disseminated candidiasis model exhibited a dose-like response with 0.56 and 0.66 log reduction of infectious burden when treated with 20 and 40 mg/kg cyphomycin (14), respectively, and epoxycyphomycin (15) exhibited 0.53 log ii reduction with 40 mg/kg, demonstrating clinical relevance and effectiveness of 14 and 15 in this industry-standard model of Candida infection. On the other hand, GT-35 (16) killed the mice 1 hr post dose at 40 mg/kg.

O extrato bruto da planta inteira (Peperomia trineura) foi submetido à cromatografia de adsorção em sílica gel, cromatografia em camada delgada preparativa (CCDP) e CLAE semipreparativa, resultando no isolamento de cinco policetídeos inéditos em função do comprimento ou presença da insaturação na cadeia alquílica. A elucidação estrutural destes policetídeos foi realizada com base nas analises espectroscópicas de RMN 1D e 2D, infravermelho e espectrometria de massas de baixa e alta resolução. As frações provenientes do extrato bruto foram testadas frente a duas linhagens de células leucêmicas (K-562 e Nalm 6), apresentando atividades consideráveis. Já os policetídeos tiveram seu potencial antifúngico avaliado frente a duas espécies de fungos fitopatogênicas - Cladosporium cladosporioides e C. sphaerospermum - e apresentaram atividade fraca e média variando de acordo com suas estruturas. / The crude extract of whole plant (Peperomia trineura) was subjected to adsorption chromatography on silica gel, preparative thin-layer chromatography (CCDP) and semi-preparative HPLC, resulting in the isolation of five novel polyketides with variable chain lenght or presence of unsaturation in the alkyl chain. The structural elucidation of these compounds was based on spectroscopic techniques for 1D and 2D NMR, infrared and low and high resolution mass spectrometry. The fractions from the crude extract were tested against the two leukemic cell lines (K-562 and Nalm 6), showing considerable activities. The polyketides were evaluated against the phytopathogenic fungi - Cladosporium cladosporioides and C. sphaerospermum - and displayed low and medium activity.

Since the middle of the 20th century, significant interest has evolved from the scientific community towards the polypropionate family of marine natural products. A number of these compounds have been shown to possess significant biological activity, and this property, as well as their structural complexity, has driven numerous efforts towards their synthesis. The first chapter provides an introduction into the world of polypropionates, with a discussion on synthetic studies into a number of members of the tridachiapyrone family. Fundamental synthetic concepts utilised in this thesis towards the preparation of polyketides are also described, with a focus on their application towards the synthesis of 9,10-deoxytridachione, anti tridachiahydropyrone and syn tridachiahydropyrone. Chapter 2 describes the work undertaken towards the total synthesis of 9,10-deoxytridachione. The novel tandem conjugate addition-Dieckmann condensation of complex enones developed previously in the Perkins group was used to generate anti methylated cyclohexenones as key synthetic intermediates. The conversion of the cyclohexenones into the corresponding cyclohexadienes via allylic alcohols was attempted, utilising a Grignard-mediated reaction to achieve the selective 1,2-reduction. Studies into the Grignard-mediated reduction were also undertaken on seven additional cyclohexenones, in order to investigate the utility and scope of the reaction. The extension of the methodology previously developed for the synthesis of cyclohexenones is the subject of Chapter 3. This section describes investigations into the synthesis of stereochemically-diverse cyclohexenones from complex enones. The conjugate addition-Dieckmann condensation strategy was extended successfully towards the synthesis of a syn methylated cyclohexenone, which allowed the synthesis of the proposed true structure of tridachiahydropyrone to be pursued. The methodology developed in Chapter 3 was utilised in Chapter 4 to synthesise a model system of syn tridachiahydropyrone. A comparative analysis of the NMR data of the syn model, an anti model and anti tridachiahydropyrone with the natural product indicated that the true structure of tridachiahydropyrone may indeed have syn stereochemistry. The synthesis of syn tridachiahydropyrone was attempted, and to this end a suitable cyclohexanone was successfully synthesised. However, the subsequent methylation-elimination cascade failed to furnish the desired syn methylated cyclohexenone, producing only an anti methylated cyclohexanone. The stereochemistry of the methylation was deduced using high and low variable temperature NMR coupled with selective irradiation NOESY.

O extrato bruto da planta inteira (Peperomia trineura) foi submetido à cromatografia de adsorção em sílica gel, cromatografia em camada delgada preparativa (CCDP) e CLAE semipreparativa, resultando no isolamento de cinco policetídeos inéditos em função do comprimento ou presença da insaturação na cadeia alquílica. A elucidação estrutural destes policetídeos foi realizada com base nas analises espectroscópicas de RMN 1D e 2D, infravermelho e espectrometria de massas de baixa e alta resolução. As frações provenientes do extrato bruto foram testadas frente a duas linhagens de células leucêmicas (K-562 e Nalm 6), apresentando atividades consideráveis. Já os policetídeos tiveram seu potencial antifúngico avaliado frente a duas espécies de fungos fitopatogênicas - Cladosporium cladosporioides e C. sphaerospermum - e apresentaram atividade fraca e média variando de acordo com suas estruturas. / The crude extract of whole plant (Peperomia trineura) was subjected to adsorption chromatography on silica gel, preparative thin-layer chromatography (CCDP) and semi-preparative HPLC, resulting in the isolation of five novel polyketides with variable chain lenght or presence of unsaturation in the alkyl chain. The structural elucidation of these compounds was based on spectroscopic techniques for 1D and 2D NMR, infrared and low and high resolution mass spectrometry. The fractions from the crude extract were tested against the two leukemic cell lines (K-562 and Nalm 6), showing considerable activities. The polyketides were evaluated against the phytopathogenic fungi - Cladosporium cladosporioides and C. sphaerospermum - and displayed low and medium activity.

The present study aims at the isolation and identification of diverse phenolic polyketides from Aloe vera (L.) Burm.f. and Aloe plicatilis (L.) Miller and includes their 5-LOX/COX-1 inhibiting potency. After initial Sephadex-LH20 gel filtration and combined silica gel 60- and RP18-CC, three dihydroisocoumarins (nonaketides), four 5-methyl-8-C-glucosylchromones (heptaketides) from A. vera, and two hexaketide-naphthalenes from A. plicatilis have been isolated by means of HSCCC. The structures of all polyketides were elucidated by ESI-MS and 2D 1H/13C-NMR (HMQC, HMBC) techniques. The analytical/preparative separation of 3R-feralolide, 3′-O-β-d-glucopyranosyl- and the new 6-O-β-d-glucopyranosyl-3R-feralolide into their respective positional isomers are described here for the first time, including the assignment of the 3R-configuration in all feralolides by comparative CD spectroscopy. The chromones 7-O-methyl-aloesin and 7-O-methyl-aloeresin A were isolated for the first time from A. vera, together with the previously described aloesin (syn. aloeresin B) and aloeresin D. Furthermore, the new 5,6,7,8-tetrahydro-1-O-β-d-glucopyranosyl- 3,6R-dihydroxy-8R-methylnaphtalene was isolated from A. plicatilis, together with the known plicataloside. Subsequently, biological-pharmacological screening was performed to identify Aloe polyketides with anti-inflammatory potential in vitro. In addition to the above constituents, the anthranoids (octaketides) aloe emodin, aloin, 6′-(E)-p-coumaroyl-aloin A and B, and 6′-(E)-p-coumaroyl-7-hydroxy-8-O-methyl-aloin A and B were tested. In the COX-1 examination, only feralolide (10 µM) inhibited the formation of MDA by 24%, whereas the other polyketides did not display any inhibition at all. In the 5-LOX-test, all aloin-type anthranoids (10 µM) inhibited the formation of LTB4 by about 25–41%. Aloesin also displayed 10% inhibition at 10 µM in this in vitro setup, while the other chromones and naphthalenes did not display any activity. The present study, therefore, demonstrates the importance of low molecular phenolic polyketides for the known overall anti-inflammatory activity of Aloe vera preparations.

Microbial natural products have been a source for new drugs for many decades and are unrivaled in their capacity to generate not only future therapeutic agents, but also providing key agents for agricultural and industrial use. LC-MS/MS based metabolomic tools and technologies have been developed that can rapidly dereplicate nonribosomal peptides and statistically identify related congeners in an automated nontargeted process from complex natural product extracts with nanogram sensitivity. This data-base search approach is designed to handle linear, cyclic and cyclic-branched nonribosomal peptides from proteinogenic and nonproteinogenic amino acids without genomic data or traditional bioactivity directed fractionation. Chemometric work-flows combined with a comprehensive metabolomic guided discovery strategy were used to profile the chemical space of a diverse collection of understudied fungal endophytes from fruiting plants. This approach allowed for the prioritization of unique isolates and for the focused discovery, isolation and characterization of distinct outlier metabolites by LC-SPE, 1D and 2D NMR, HRMS and single crystal X-ray analysis. These metabolomic tools and strategies have led to the discovery and characterization of 35 new and over 40 known natural products, many of which are biologically active. This thesis with enabling metabolomic tools and novel discoveries has demonstrated the utility of these analytical methodologies as an effective strategy for the untargeted discovery of new natural products from bacteria and endophytic fungi. / Thesis / Doctor of Philosophy (PhD)

Leiodolide A is a unique natural product isolated from Pacific marine sponges which has provided an interesting target for total synthesis due to its complex structure and undefined stereochemistry. Although synthetic work towards the synthesis of sister compound leiodolide B has been published, the total synthesis of leiodolide A is yet to be achieved but remains an important target due to high potency against leukaemia, non-small lung and ovarian cancers. The convergent strategy towards the synthesis of leiodolide A involved the synthesis of three subunits; a synthetic route to the C21-C25 vinyl stannane is described, and efforts towards the synthesis of the bidirectional C11-C20 subunit are detailed. Asymmetric vinylogous aldol methodology was developed for the installation of the 1,2-syn propionate motif found in the C1-C10 subunit and in other polypropionate natural products, and was shown to be applicable to a range of substrates in moderate diastereoselectivity and excellent enantioselectivity.

No description available.

No description available.