Orientador: Fernanda da Cruz Landim-Alvarenga / Resumo: As tecnologias de reprodução assistida, tais como a fertilização in vitro (FIV), transferência de embriões, transgenia e clonagem, ainda não tem o impacto comercial desejado devido a baixa produção embrionária. Apenas 30 a 40% dos blastocistos desenvolvidos são obtidos de oócitos após a MIV, fertilização e cultivo dos embriões, embora 80% dos oócitos maturados in vitro sejam fertilizados com sucesso. O soro fetal bovino (SFB) é o suplemento mais utilizado no cultivo de embriões in vitro, uma vez que melhora o desenvolvimento dos blastocistos. Apesar disso, sua presença está relacionada a alterações do metabolismo embrionário, perda de qualidade e indução de modificações na expressão de vários genes embrionários. Na tentativa de minimizar os efeitos deletérios do SFB, várias citocinas e fatores de crescimento têm sido acrescentados aos meios de cultivo embrionários in vitro, com a intenção de mimetizar as condições de cultivo in vivo. O presente experimento tem como objetivo avaliar e comparar os efeitos da adição do SFB e de meio condicionado por células mesenquimais estromais (MSCs) durante o cultivo embrionário. Os parâmetros analisados foram a viabilidade embrionária, apoptose e o perfil transcricional de genes relacionados à qualidade dos embriões. Não foi observado uma diferença (P≥0,05) na clivagem dos blastocistos, porém observou-se que a taxa de produção de embriões utilizando SFB no CIV foi maior (P≤0,05) quando comparada com MC, mas não diferiu (P≥0,05) do grupo pro... (Resumo completo, clicar acesso eletrônico abaixo) / Abstract: Endometrial mesenchymal stromal cell (eMSCs) secretes bioactive molecules such as cytokines and growth factors which are released as soluble factors or through extracellular vesicles (EVs). Conditioned medium (CM) of the MSCs maintains the immunomodulation and regenerative potential properties of the cells that produced it. This study investigated the use of CM by eMSC plus BSA as alternative to FBS in embryo culture medium. The developmental ability and quality of bovine embryos were determined by assessing their cell number and gene expression. The percentage of embryos that underwent cleavage was similar (P>0.05) among the groups but blastocyst formation was higher (P<0.05) in FBS group. The total cell number was higher in CM group, but not statistically different from the others (P>0.05). The relative mRNA expression of ELOVL6 was higher in the CM group, CASP3 in the BSA group, ACSL3 and VEGF in the FBS group. Taken together, these data suggest that CM can be used as an alternative supplement to FBS. We observed a different gene expression profile, suggesting the CM inhibited an increase in the relative mRNA levels for CASP3. Moreover, the CM favored the total number cells, inhibited the percentage of cells in apoptosis and produces better quality embryo. / Mestre

O trigo (Triticum aestivum L.) é uma importante cultura no Brasil. Poucas cultivares são recomendadas para produção do tipo sequeiro no Bioma Cerrado onde a escassez de água limita o rendimento de grãos. Aqui reportamos uma análise de transcriptoma do MGS1 Aliança (cultivar de trigo adaptada ao Cerrado) sob estresse de seca. Um grupo de 4.422 transcritos diferencialmente expressos foi encontrado em raízes e folhas. O número de transcritos reprimidos em raiz (1.102) foi menor que os transcritos induzidos (1.706), enquanto o oposto ocorreu em folhas (1,017 induzidos e 647 reprimidos). O número de transcritos comuns entre ambos órgaõs foi 1.249, enquanto 2.124 foram específicos para raíz e 1.049 específicos para folhas. Análises de RT-qPCR de 35 transcritos selecionados ao acaso revelou uma correlação de 0,78 com os dados de transcriptoma. Os transcritos diferencialmente expressos foram distribuídos por todos os cromossomos e componentes do genoma. O número de transcritos no genoma B foi maior do que nos genomas A e D. Ainda, um grande número de transcritos relacionados à seca foi mapeado nos cromossomos 3B, 5B e 2B. Quando consideramos ambos órgãos, 116 diferentes rotas metabólicas foram alteradas. Uma rota em comum, entre as três mais alteradas em ambos órgãos, foi o metabolismo do amido e da sacarose. A comparação de transcritos derivados de raiz e de folha permite a identificação de transcritos importantes relacionados à respota ao estresse de seca em cada um destes órgãos. Os dados obtidos, também, abrem caminho para o desenvolvimento de futuros marcadores e seleção de genes candidatos ligados à característica. Estes resultados são úteis para o entendimento de rotas metabólicas envolvidas na tolerância à seca em trigo. A informação gerada será usada, a mais longo prazo, para propósitos de transgenia. Para isto, a metodologia de duplo-haploides é desejável e uma primeira investigação sobre a eficiência de protocolo se mostrou necessária. Micrósporos são células gaméticas com capacidade de dar origem a uma nova planta via embriogênese in vitro. Plantas duplo-haploides geradas pela cultura de micrósporos isolados são completamente homozigotas e representam uma importante ferramenta para estudos genéticos e melhoramento de plantas O processo androgenético é desencadeado por diferentes pré-tratamentos de estresse, os quais são empregados para mudar os micrósporos da rota gametofítica para a rota esporofítica. Embora a cultura de micrósporos isolados tenha inúmeras vantagens, importantes limitações tem impedido sua apliação em larga escala. Diferenças genotípicas na resposta androgenética e na formação de plantas albinas ainda constituem desafios. Embora o albinismo seja principalmente uma característica genética, pré-tratamentos e meios de cultura apropriados podem evitar este fenômeno até certo ponto. A resposta androgenética de cinco genótipos de trigo brasileiro foi avaliada no presente estudo. Dois pré-tratamentos foram testados: frio (4°C) e ácido 2-hidroxinicotinico (100 mg/L). O frio foi melhor que o pré-tratamento químico, produzindo mais plantas verdes em quatro de cinco genótipos. Somente dois genótipos brasileiros tratados com ácido 2-hidroxinicotinico produziram plantas, e um deles apenas uma única planta albina. Nossos reultados mostram, também, que o meio semilíquido (contendo 10% de Ficoll) promoveu uma maior resposta androgenética que o meio líquido, aumentando o número de embriões e plantas regeneradas. / Wheat (Triticum aestivum L.) is an important crop cultivated in Brazil. Few cultivars are recommended for rainfed production in the Cerrado Biome where water scarcity limits grain yield. Here we report a transcriptome analysis of MGS1 Aliança (a wheat cultivar adapted to the Cerrado) under drought stress. A set of 4,422 differentially expressed transcripts was found in roots and leaves. The number of down-regulated transcripts in roots (1,102) was lower than the up-regulated transcripts (1,706), while the opposite occurred in leaves (1,017 induced and 647 repressed). The number of common transcripts between the two tissues was 1,249, while 2,124 were specific to roots and 1,049 specific to leaves. Quantitative RT-PCR analysis of 35 randomly selected transcripts revealed a 0.78 correlation with the transcriptome data. The differentially expressed transcripts were distributed across all chromosomes and component genomes. The number of transcripts on the B genome was greater than on the A and D genomes. Additionally, a greater number of drought related transcripts was mapped on chromosomes 3B, 5B and 5D. When considering both tissues, 116 different metabolic pathways were changed. One common pathway, among the top three changed pathways in both tissues, was starch and sucrose metabolism. The comparison of root- and leaf-derived transcripts allows the identification of important transcripts related to water stress response in each of these tissues. It also paves the way for future marker development and selection of candidate genes linked to that trait. These results are useful for understanding the metabolic pathways involved in wheat drought response. The information generated will be used for transgenic wheat purposes. For this the doubled-haploid method is desirable and an investigation about the protocol eficiency is needed. Microspores are gametic cells with capacity to give rise to a new plant via in vitro embryogenesis. Doubled haploid plants generated by isolated microspore culture are completely homozygous and represent an important tool for plant genetics and breeding research. This process is triggered by different stress pretreatments, which are employed to switch microspores from gametophytic to a sporophytic pathway. Although isolated microspore culture has innumerous advantages, important limitations have prevented its application on a large scale. Genotypic differences in androgenic response and the formation of albino plants remain great challenges. Although albinism is a major genetic characteristic, appropriated pretreatments and culture medium can avoid this phenomenon to some extent. The androgenic response of five Brazilian wheat genotypes was evaluated in the present study. Two pretreatments were tested: cold (4°C) and 2-hydroxynicotinic acid (100 mg/L). Cold was better than chemical pretreatment, producing more green plants in four out of five genotypes. Only two Brazilian genotypes treated with 2-hydroxynicotinic acid produced plants, and one of them produced a single albino plant. Our results also show that semi-liquid medium (containing 10% Ficoll) promoted a higher androgenic response than did liquid medium, increasing the number of embryos and regenerated plants.

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior / Trypanosoma cruzi é o agente causador da doença de Chagas, uma das doenças tropicais mais negligenciadas. Estima-se que cerca de 11 milhões de pessoas no mundo estão infectadas por T. cruzi e cerca de 6 a 7 milhões de pessoas estão em risco por encontrarem-se em áreas endêmicas. Durante o processo de invasão moléculas do parasita e do hospedeiro interagem permitindo a transdução de sinal e a expressão de genes de modulação em resposta à invasão. A diversidade de proteínas e vias acionadas para reparar a lesão pela ruptura da membrana plasmática nos interessou e dessa forma o presente estudo desenvolveu uma nova forma de detecção e quantificação por reação em cadeia da polimerase em tempo real (qPCR) da carga parasitária de T. cruzi e a quantificou os níveis transcricionais relativos (RT-qPCR) da Disferlina, Esfingomielina esferase ácida (ASM), Fator de Transcrição EB (TFEB), Galectinas 1 e 3 e Anexina A2. Neste estudo, foi demonstrado que a quantificação por PCR em tempo real utilizando os iniciadores P21fw e P21rv foi específico e sensível para a detecção de T. cruzi in vivo e in vitro, bem como os níveis transcricionais de genes relacionados a organização do citoesqueleto e reparo de membrana plasmática são moduladas em resposta ao dano gerado pelo parasita. / Trypanosoma cruzi is causative agent of Chagas disease, one of most neglected tropical diseases. Estimated that about 11 million people worldwide are infected by T. cruzi and about 6 to 7 million people are at risk in endemic areas. During the process of invasion of host and parasite interact enabling signal transduction and gene expression modulation in response to invasion. The diversity of activated proteins and pathways to repair the damage by disruption of the plasma membrane interest to us and thus present study developed a new form of detection and quantitation by polymerase chain reaction in real time (qPCR) of parasitic load T. cruzi and quantified transcriptional levels relative (RT-qPCR) of dysferlin, Sphingomyelin acid esferase (ASM), transcription factor EB (TFEB) Galectins 1 and 3 and Annexin A2. This study demonstrated that quantification by real time PCR using primers P21fw and P21rv was specific and sensitive for detection of T. cruzi in vivo and in vitro, as well as transcriptional levels of genes related to cytoskeletal organization and repair plasma membrane are modulated in response to damage generated by parasite. / Tese (Doutorado)

O trigo (Triticum aestivum L.) é uma importante cultura no Brasil. Poucas cultivares são recomendadas para produção do tipo sequeiro no Bioma Cerrado onde a escassez de água limita o rendimento de grãos. Aqui reportamos uma análise de transcriptoma do MGS1 Aliança (cultivar de trigo adaptada ao Cerrado) sob estresse de seca. Um grupo de 4.422 transcritos diferencialmente expressos foi encontrado em raízes e folhas. O número de transcritos reprimidos em raiz (1.102) foi menor que os transcritos induzidos (1.706), enquanto o oposto ocorreu em folhas (1,017 induzidos e 647 reprimidos). O número de transcritos comuns entre ambos órgaõs foi 1.249, enquanto 2.124 foram específicos para raíz e 1.049 específicos para folhas. Análises de RT-qPCR de 35 transcritos selecionados ao acaso revelou uma correlação de 0,78 com os dados de transcriptoma. Os transcritos diferencialmente expressos foram distribuídos por todos os cromossomos e componentes do genoma. O número de transcritos no genoma B foi maior do que nos genomas A e D. Ainda, um grande número de transcritos relacionados à seca foi mapeado nos cromossomos 3B, 5B e 2B. Quando consideramos ambos órgãos, 116 diferentes rotas metabólicas foram alteradas. Uma rota em comum, entre as três mais alteradas em ambos órgãos, foi o metabolismo do amido e da sacarose. A comparação de transcritos derivados de raiz e de folha permite a identificação de transcritos importantes relacionados à respota ao estresse de seca em cada um destes órgãos. Os dados obtidos, também, abrem caminho para o desenvolvimento de futuros marcadores e seleção de genes candidatos ligados à característica. Estes resultados são úteis para o entendimento de rotas metabólicas envolvidas na tolerância à seca em trigo. A informação gerada será usada, a mais longo prazo, para propósitos de transgenia. Para isto, a metodologia de duplo-haploides é desejável e uma primeira investigação sobre a eficiência de protocolo se mostrou necessária. Micrósporos são células gaméticas com capacidade de dar origem a uma nova planta via embriogênese in vitro. Plantas duplo-haploides geradas pela cultura de micrósporos isolados são completamente homozigotas e representam uma importante ferramenta para estudos genéticos e melhoramento de plantas O processo androgenético é desencadeado por diferentes pré-tratamentos de estresse, os quais são empregados para mudar os micrósporos da rota gametofítica para a rota esporofítica. Embora a cultura de micrósporos isolados tenha inúmeras vantagens, importantes limitações tem impedido sua apliação em larga escala. Diferenças genotípicas na resposta androgenética e na formação de plantas albinas ainda constituem desafios. Embora o albinismo seja principalmente uma característica genética, pré-tratamentos e meios de cultura apropriados podem evitar este fenômeno até certo ponto. A resposta androgenética de cinco genótipos de trigo brasileiro foi avaliada no presente estudo. Dois pré-tratamentos foram testados: frio (4°C) e ácido 2-hidroxinicotinico (100 mg/L). O frio foi melhor que o pré-tratamento químico, produzindo mais plantas verdes em quatro de cinco genótipos. Somente dois genótipos brasileiros tratados com ácido 2-hidroxinicotinico produziram plantas, e um deles apenas uma única planta albina. Nossos reultados mostram, também, que o meio semilíquido (contendo 10% de Ficoll) promoveu uma maior resposta androgenética que o meio líquido, aumentando o número de embriões e plantas regeneradas. / Wheat (Triticum aestivum L.) is an important crop cultivated in Brazil. Few cultivars are recommended for rainfed production in the Cerrado Biome where water scarcity limits grain yield. Here we report a transcriptome analysis of MGS1 Aliança (a wheat cultivar adapted to the Cerrado) under drought stress. A set of 4,422 differentially expressed transcripts was found in roots and leaves. The number of down-regulated transcripts in roots (1,102) was lower than the up-regulated transcripts (1,706), while the opposite occurred in leaves (1,017 induced and 647 repressed). The number of common transcripts between the two tissues was 1,249, while 2,124 were specific to roots and 1,049 specific to leaves. Quantitative RT-PCR analysis of 35 randomly selected transcripts revealed a 0.78 correlation with the transcriptome data. The differentially expressed transcripts were distributed across all chromosomes and component genomes. The number of transcripts on the B genome was greater than on the A and D genomes. Additionally, a greater number of drought related transcripts was mapped on chromosomes 3B, 5B and 5D. When considering both tissues, 116 different metabolic pathways were changed. One common pathway, among the top three changed pathways in both tissues, was starch and sucrose metabolism. The comparison of root- and leaf-derived transcripts allows the identification of important transcripts related to water stress response in each of these tissues. It also paves the way for future marker development and selection of candidate genes linked to that trait. These results are useful for understanding the metabolic pathways involved in wheat drought response. The information generated will be used for transgenic wheat purposes. For this the doubled-haploid method is desirable and an investigation about the protocol eficiency is needed. Microspores are gametic cells with capacity to give rise to a new plant via in vitro embryogenesis. Doubled haploid plants generated by isolated microspore culture are completely homozygous and represent an important tool for plant genetics and breeding research. This process is triggered by different stress pretreatments, which are employed to switch microspores from gametophytic to a sporophytic pathway. Although isolated microspore culture has innumerous advantages, important limitations have prevented its application on a large scale. Genotypic differences in androgenic response and the formation of albino plants remain great challenges. Although albinism is a major genetic characteristic, appropriated pretreatments and culture medium can avoid this phenomenon to some extent. The androgenic response of five Brazilian wheat genotypes was evaluated in the present study. Two pretreatments were tested: cold (4°C) and 2-hydroxynicotinic acid (100 mg/L). Cold was better than chemical pretreatment, producing more green plants in four out of five genotypes. Only two Brazilian genotypes treated with 2-hydroxynicotinic acid produced plants, and one of them produced a single albino plant. Our results also show that semi-liquid medium (containing 10% Ficoll) promoted a higher androgenic response than did liquid medium, increasing the number of embryos and regenerated plants.

Submitted by Maria Beatriz Vieira (mbeatriz.vieira@gmail.com) on 2018-06-14T12:18:01Z No. of bitstreams: 2 license_rdf: 0 bytes, checksum: d41d8cd98f00b204e9800998ecf8427e (MD5) resumo_tese_natalia_dias_gomes_da_silva.pdf: 16351 bytes, checksum: 4d5433db73902cfdaaf0790d25a1cf28 (MD5) / Approved for entry into archive by Aline Batista (alinehb.ufpel@gmail.com) on 2018-06-14T20:52:21Z (GMT) No. of bitstreams: 2 license_rdf: 0 bytes, checksum: d41d8cd98f00b204e9800998ecf8427e (MD5) resumo_tese_natalia_dias_gomes_da_silva.pdf: 16351 bytes, checksum: 4d5433db73902cfdaaf0790d25a1cf28 (MD5) / Made available in DSpace on 2018-06-14T20:52:21Z (GMT). No. of bitstreams: 2 license_rdf: 0 bytes, checksum: d41d8cd98f00b204e9800998ecf8427e (MD5) resumo_tese_natalia_dias_gomes_da_silva.pdf: 16351 bytes, checksum: 4d5433db73902cfdaaf0790d25a1cf28 (MD5) Previous issue date: 2017-06-23 / Coordenação de Aperfeiçoamento de Pessoal de Nível Superior - CAPES / A aveia-branca (Avena sativa L.) é alternativa para sucessão de culturas, com potencial de uso nas áreas de produção de arroz irrigado (Oryza sativa L.) no Sul do Brasil. As características dos solos desta região podem limitar o crescimento e desenvolvimento da aveia-branca. Assim, os objetivos desse estudo foram identificar uma concentração de ferro capaz de causar toxicidade em plantas de aveia, diferenciar genótipos sensíveis e tolerantes ao excesso de ferro, quantificar teores nutricionais e verificar possíveis genes envolvidos nestes processos, a fim de auxiliar em trabalhos de melhoramento de cultivares mais adaptadas ao cultivo no Sul do Brasil. Os estudos foram realizados entre os anos 2014 e 2016, no Departamento de Botânica da Universidade Federal de Pelotas e Crop Soil and Environmental Sciences Departament da University of Arkansas. Os resultados evidenciaram que a concentração de 13,5 mmol L-1 de EDTA ferroso em solução nutritiva é eficiente para a distinção de genótipos de aveia tolerantes ou sensíveis ao excesso de Fe. O genótipo URS Taura é tolerante ao excesso de ferro, enquanto os genótipos UPFPS Farroupilha e URS Corona são sensíveis, em condições controladas, através do sistema hidropônico, devendo ser evitadas em áreas suscetíveis à toxidez do nutriente. O excesso de ferro altera a concentração nutricional dos demais elementos nas plantas de aveia. O excesso de ferro na solução nutritiva proporciona alteração significativa na expressão relativa de alguns genes relacionados a absorção, translocação e armazenamento de ferro em plantas de aveia, sendo que os genes OsGS1, OsFER1 e OsPSBA, parecem estar relacionadaos aos processos de tolerância da cultivar URS Taura ao excesso de Fe. O sistema hidropônico é eficiente para a diferenciação de cultivares sensíveis ou tolerantes ao excesso de ferro, possibilitando escolhas mais eficientes para novos trabalhos e indicação de cultivares tolerantes ao excesso do nutriente. / White oat (Avena sativa L.) is an alternative for succession of crops with potential for use in irrigated rice (Oryza sativa L.) production areas, in southern Brazil. The characteristics of these soils may limit the growth and development of white oats. Thus, the objectives of this study were to identify an iron concentration capable of causing toxicity in oat plants, besides differentiating sensitive and tolerant genotypes to iron excess, to quantify nutritional contents and to verify possible genes involved in these processes, in order to assist in futures work in the area, as well as indicate cultivars adapted to the growing conditions of southern Brazil. For that, studies were carried out between 2014 and 2016, in a greenhouse and laboratories of the Department of Botany of the Federal University of Pelotas and Crop Soil and Environmental Sciences Departament of the University of Arkansas. The results showed that the concentration of 13.5 mmol L-1 of ferrous EDTA in nutrient solution is efficient for the distinction of oat genotypes submitted to iron excess. The URS Taura genotype is tolerant to iron excess, while the UPFPS Farroupilha and URS Corona are sensitive under controlled conditions through the hydroponic system and should be avoided in areas susceptible to nutrient toxicity. Iron excess alters the nutritional concentration of the other elements in oat plants. Iron excess in the nutrient solution provides significant alteration in the relative expression of some genes related to iron uptake, translocation and storage in oat plants, being that the genes OsGS1, OsFER1 and OsPSBA, seem to be related to the tolerance processes of the cultivar URS Taura to the excess of Fe. The hydroponic system is efficient for the differentiation of sensitive or tolerant cultivars of iron excess, thus making possible more efficient choices for new work and indication of tolerant cultivars to nutrient excess.

Les nématodes à kystes sont l’un des bioagresseurs causant le plus de dégâts sur les cultures de pommes de terre. La résistance trouvée chez l'accession spl88S.329.18, issue de l'espèce Solanum sparsipilum est caractérisée par un déterminisme oligogénique avec un QTL à localisé sur le chromosome V (GpaVspl) et un QTL mineur localisé sur le chromosome XI(GpaXIspl). Pour obtenir une résistance de haut niveau, l'effet du QTL GpaVspl, doit êtrecomplémenté par celui du QTL à effet faible GpaXIspl. Par génomique comparative, le locusGpaV a été localisé dans un intervalle compris entre 16 et 60 kb sur les génomes de la tomateet des espèces apparentées à la pomme de terre, Solanum demissum et Solanum phureja. Deuxgènes ont été annotés dans cet intervalle sur les génomes de la tomate et de S. demissum : lepremier appartient à la famille des TIR-NBS-LRR (TNL), famille de gènes de résistanceclassiques, et le second appartient à la famille des « mitochondrial, transcription terminationfactor » (mTERF), dont l’implication dans des mécanismes de résistance n’a jamais étédémontrée.Les objectifs de ma thèse étaient d'identifier le(s) gène(s) responsable(s) de la résistance àG. pallida, conférée par le locus GpaVspl, et d'étudier sa régulation. Suite à la publication de laséquence du génome de S. phureja, en 2011, nous avons mis en évidence que le locus GpaVétait dupliqué chez S. phureja et que cette duplication était également présente chezS. sparsipilum. Les quatre gènes annotés au locus GpaVspl ont été nommésSpl_mTERF18430, Spl_TNL18429, Spl_mTERF18453 et Spl_TNL18428.L'effet des deux gènes Spl_mTERF18430 et Spl_TNL18428 sur la résistance à G. pallida aété analysé via des expériences de transformation génétique suivies par des tests de résistancesur les plantes transformées. Un effet partiel du gène Spl_TNL18428 sur la résistance àG. pallida a été mis en évidence par complémentation de plantes sensibles. Aucun effetsignificatif n'a été détecté pour le gène Spl_mTERF18430. Des expériences d'extinctiongénique suggèrent que le deuxième gène TIR-NBS-LRR, Spl_TNL18429, qui est égalementexprimé dans les racines et qui présente un fort pourcentage d'identité de séquence avec legène Spl_TNL18428, pourrait également être impliqué dans la résistance à G. pallida.L'expression du gène rapporteur GFP, placé sous le contrôle du promoteur du gèneSpl_TNL18428, est fortement induite dans les cellules situées autour du syncytium. Cecirenforce l'hypothèse d'une implication du gène Spl_TNL18428 dans la résistance à G. pallida,car la localisation de l'expression de la GFP est similaire à celle de la nécrose, qui estcaractéristique de la réaction développée par les plantes résistantes autour du syncytium induitpar les nématodes.En tenant compte des données bibliographiques récentes, montrant que plusieurs gènes NBSLRRpeuvent être indispensables à l'expression d'une résistance, nos résultats suggèrent queles deux gènes Spl_TNL18428 et Spl_TNL18429 sont nécessaires à l'expression de larésistance à G. pallida / Cyst nematodes are one of the pests that cause the most damage to potato cultures. Resistance found in the accession spl88S.329.18 in Solanum sparsipilum is characterized by oligogenic determinism with a strong effect QTL on chromosome V (GpaVspl) and a minor effect QTL on chromosome XI (GpaXIspl). To obtain a high level of resistance, the effect of QTL GpaVspl must be complemented by the low effect QTL GpaXIspl. By comparative genomics, the GpaV locus was located in a range between 16 and 60 kb in genomes of tomato and potato related species: Solanum demissum and Solanum phureja. Two genes were annotated: the first belonging to the TIR -NBS -LRR gene family (TNL) and the second one belonging to the “mitochondrial transcription termination factor” family (mTERF). The effect of both genes -Spl_TNL18428 and Spl_mTERF18430- on resistance to G. pallida were analyzed via genetic transformation experiments followed by resistance tests on transformed plants. A partial effect of Spl_TNL18428 on resistance to G. pallida was identified by complementation of susceptible plants. Gene silencing experiments suggested that Spl_TNL18429, which occurs in roots and presents a high percentage of sequence identity with the gene Spl_TNL18428, is also involved in resistance to G. pallida. The expression of the GFP reporter gene, under the control of the Spl_TNL18428 gene promoter, is strongly induced in cells located around the syncytium. This strengthens the hypothesis of an involvement of Spl_TNL18428 gene in resistance to G. pallida, because the location of GFP expression is similar to necrosis, which is characteristic of resistant plants. Taking into account that recent data showing that several NBS-LRR genes may be essential for the expression of resistance, our results suggest that both Spl_TNL18428 and Spl_TNL18429 genes are necessary for the expression of resistance to G. pallida

Glutamate is the main excitatory neurotransmitter in the mammalian brain and its transmission is responsible for higher brain functions, such as learning, memory and cognition. Glutamate action is mediated by a variety of glutamate receptors, though their properties were until now studied predominantly in neurons. Glutamate receptors are expressed also in NG2-glia, however their role under physiological conditions as well as in pathological states of the central nervous system is not fully understood. The aim of this work is to elucidate the presence, composition and function of these receptors in NG2-glia under physiological conditions and following focal cerebral ischemia. For this purpose we used transgenic mice, in which NG2-glia are labeled by a fluorescent protein for their precise identification. To analyze the expression pattern of glutamate receptors in NG2-glia we employed single-cell RT-qPCR. Furthermore, we used calcium imaging to characterize their functional properties.

For the past few decades, the popularity of graphene oxide (GO) nanomaterials (NMs) has increased exceedingly due to their biomedical applications in drug delivery of anti-cancer drugs. Their unique physicochemical properties such as high surface area and good surface chemistry with unbound surface functional groups (e.g. hydroxyl - OH, carboxyl /ketone C=O, epoxy/alkoxy C-O, aromatic group C=C, etc) which enable covalent bonding with organic molecules (e.g. RNA, DNA) make GO NMs as excellent candidates in drug delivery nanocarriers. Despite the overwhelming biomedical applications, there are concerns about their genotoxicity on human DNA. Published genotoxicity studies on GO NMs were performed using non-commercial GO with 2-3 layers of GO sheets, synthesized in various laboratories with the potential for inter-laboratory variabilities. However, what has not been studied before is the effects of the commercial GO (15-20 sheets; 4-10% edge-oxidized; 1 mg/mL) in vitro on DNA damage in human whole blood and peripheral blood lymphocytes (PBL) from real-life patients diagnosed with chronic pulmonary diseases [asthma, chronic obstructive pulmonary disease (COPD), and lung cancer], and genotoxic endpoints compared with those from healthy control individuals to determine whether there are any differences in GO sensitivity. Thus, in the present study, we had characterized GO NMs using Zetasizer Nano for Dynamic Light Scattering (DLS) and zeta potential (ZP) in the aqueous solution, and electron microscopy using the Scanning Electron Microscope (SEM) and Transmission Electron Microscope (TEM) in the dry state, respectively. Cytotoxicity studies were conducted on human PBL from healthy individuals and patients (asthma, COPD, and lung cancer) using the Methylthiazolyldiphenyl-tetrazolium bromide (MTT) and Neutral Red Uptake (NRU) assays, respectively. The genotoxicity (DNA damage) and cytogenetic effects (chromosome aberration parameters) induced by GO NMs on human whole blood from healthy individuals and patients were studied using the Alkaline Comet Assay and Cytokinesis-blocked Micronucleus (CBMN) assay, respectively. Our results showed concentration-dependent increases in cytotoxicity, genotoxicity, and chromosome aberrations, with blood samples from COPD and lung cancer patients being more sensitive to DNA damage insults compared with asthma patients and healthy control individuals. Furthermore, the relative gene and protein expressions of TP53, CDKN1A/p21, and BCL-2 relative to GAPDH on human PBL were studied using the Reverse Transcription Quantitative Polymerase Chain Reaction (RT-qPCR) and Western Blot techniques, respectively. Our results have shown altered gene and protein expression levels. Specifically, GO-induced cytotoxicity, genotoxicity, and micronuclei aberrations were associated with TP53 upregulation - a biomarker of DNA damage - in both patients and healthy individuals. These effects show that GO NMs have promising roles in drug delivery applications when formulated to deliver drug payload to COPD and cancer cells. However, the fact that cytotoxicity, genotoxicity, chromosome instability, and gene/protein expressions - biomarkers of cancer risk - were observed in healthy individuals are of concern to public health, especially in occupational exposures at micro levels at the workplace.

Un nombre alarmant de personnes signalent une maladie persistante appelée COVID longue après leur infection par le virus SRAS-CoV-2. Il y a 650 million de cas de COVID-19 dans le monde, dont 10% de ces personnes développent des symptômes persistants. Parmi les symptômes observés, on remarque une fatigue profonde, de la myalgie, des troubles cognitifs, etc. Ces symptômes sont étonnamment similaires à ceux de l'encéphalomyélite myalgique (EM), une maladie chronique débilitante. L’EM est une maladie complexe souvent caractérisée par une fatigue profonde et le malaise après-effort. Environ 70% des patients atteints d'EM décrivent des épisodes d'infections virales comme élément déclencheur. Une autre maladie qui partage des symptômes similaires à l’EM est la fibromyalgie (FM). La FM est une autre maladie chronique et débilitante qui se caractérise par une douleur musculosquelettique et une sensibilisation centrale. Il n’existe toujours pas de traitement ni de test diagnostic à ce jour. Auparavant, nous avons découvert et validé onze microARN en tant que premier panel diagnostic pour l'EM et la FM. La majorité de ces petits ARN non codants participent à la régulation de gène, l'immunité et l'inflammation. Ce projet consiste à déterminer les trajectoires cliniques des personnes atteintes de la COVID longue à l’aide d’un nouveau test pronostic constitué de 11 miARN circulants permettant de différencier les diverses séquelles de la COVID longue. Par la suite, une recherche pan-génomique a permis d’établir une signature moléculaire plus précise pour chacun des six sous-groupes COVID longue. Nous proposons que les effets du virus SRAS-CoV-2 sur les microARN de l'hôte pourraient déclencher la persistance des symptômes de la COVID longue et que l’expression différentielle de certains microARN puissent contribuer au développement de différentes séquelles à long terme. Nous avons recruté des participants âgés de plus de 18 ans ayant été infectés par le virus SRAS- CoV-2, non-hospitalisés et présentant une COVID longue de plus de six mois et des sujets sains (groupe pré-pandemie) n’ayant pas reportés d’infection. L’analyse des symptômes a été réalisée à l’aide de trois questionnaires (SF-36, MFI-20, DSQ) complétés par tous les participants. Les niveaux d’expression de 11 microARN, précédemment identifiée dans l’EM, ont été mesurés par RT-qPCR dans des échantillons de plasma et la détermination des différentes trajectoires associées à des séquelles à long terme a été réalisée par analyse des composantes principales et validée par Random Forest Model (RFM). En stratifiant les patients selon leur signature de 11 miARN, nous avons évalué l’expression globale des 2549 miARN pour chaque séquelle et identifié de nouveaux miRNA spécifiques pour chacun des groupes à l’aide de la technologie microRNA array Agilent, une biopuce de la société Agilent. Nos données préliminaires nous ont permis d’identifier une signature moléculaire spécifique à chacune des séquelles de la COVID longue. Ces résultats nous permettrons de développer un nouveau test diagnostic basé sur les miRNA afin de prédire les conséquences à la suite de l’infection par le virus SRAS-CoV-2. / An alarming number of people are reporting a persistent illness called long COVID after their infection with the SARS-CoV-2 virus. There are an estimated 650 million cases of COVID-19 worldwide, with 10% of these people developing persistent symptoms. Among the symptoms observed, we notice profound fatigue, myalgia, cognitive disorders, etc. These symptoms are strikingly similar to those of myalgic encephalomyelitis (ME), a debilitating chronic disease. ME is a complex disease often characterized by profound fatigue and post-exertional malaise. Approximately 70% of ME patients describe episodes of viral infections as a trigger. Another disease that shares similar symptoms to ME is fibromyalgia (FM). FM is another chronic and debilitating disease that is characterized by musculoskeletal pain and central sensitization. There is still no treatment or diagnostic test to date. Previously, we discovered and validated eleven microRNAs as the first diagnostic panel for ME. Most of these small non-coding RNAs participate in gene regulation, immunity and inflammation. The objective of this project was to build a new diagnostic test to differentiate the various after-effects of long COVID using miRNAs. This project consists of determining the clinical trajectories of people with long COVID using a new prognostic test made up of 11 circulating miRNAs making it possible to differentiate the various after-effects of long COVID. Subsequently, a pan-genomic search made it possible to establish a more precise molecular signature for each of the six long COVID subgroups. We recruited participants aged over 18 years who had been infected with the SARS-CoV-2 virus, who were not hospitalized and had symptoms of long COVID for more than six months and healthy subjects (pre-pandemic group) who had not reported infection. The analysis of symptoms was carried out using three questionnaires (SF-36, MFI-20, DSQ) completed by all participants. The expression levels of 11 microRNAs previously identified in EM, from plasma samples were measured by RT-qPCR and the determination of the different trajectories associated with long-term sequelae was carried out by principal component analysis (PCA) and validated by Random Forest Model (RFM). By stratifying patients according to their signature of 11 miRNAs, we evaluated the overall expression of the 2549 miRNAs for each sequelae and identified new miRNAs specific for each of the groups using the Agilent microRNA array technology, a biochip from the company Agilent. Our preliminary data allowed us to identify a molecular signature specific to each of the after-effects of long COVID. These results will allow us to develop a new diagnostic test based on miRNAs in order to predict the consequences following infection by SARS-CoV-2 viruses.

Background: Heat-shock proteins of the 70 kDa family (Hsp70s) are essential chaperones required for key cellular functions. In eukaryotes, four subfamilies can be distinguished according to their function and localisation in different cellular compartments: cytosol, endoplasmic reticulum, mitochondria and chloroplasts. Generally, multiple cytosol-type Hsp70s can be found in metazoans that show either constitutive expression and/or stress-inducibility, arguing for the evolution of different tasks and functions. Information about the hsp70 copy number and diversity in microbial eukaryotes is, however, scarce, and detailed knowledge about the differential gene expression in most protists is lacking. Therefore, we have characterised the Hsp70 gene family of Paramecium caudatum to gain insight into the evolution and differential heat stress response of the distinct family members in protists and to investigate the diversification of eukaryotic hsp70s focusing on the evolution of heat-inducibility. Results: Eleven putative hsp70 genes could be detected in P. caudatum comprising homologs of three major Hsp70-subfamilies. Phylogenetic analyses revealed five evolutionarily distinct Hsp70-groups, each with a closer relationship to orthologous sequences of Paramecium tetraurelia than to another P. caudatum Hsp70-group. These highly diverse, paralogous groups resulted from duplications preceding Paramecium speciation, underwent divergent evolution and were subject to purifying selection. Heat-shock treatments were performed to test for differential expression patterns among the five Hsp70-groups as well as for a functional conservation within Paramecium. These treatments induced exceptionally high mRNA up-regulations in one cytosolic group with a low basal expression, indicative for the major heat inducible hsp70s. All other groups showed comparatively high basal expression levels and moderate heat-inducibility, signifying constitutively expressed genes. Comparative EST analyses for P. tetraurelia hsp70s unveiled a corresponding expression pattern, which supports a functionally conserved evolution of the Hsp70 gene family in Paramecium. Conclusions: Our analyses suggest an independent evolution of the heat-inducible cytosol-type hsp70s in Paramecium and in its close relative Tetrahymena, as well as within higher eukaryotes. This result indicates convergent evolution during hsp70 subfunctionalization and implies that heat-inducibility evolved several times during the course of eukaryotic evolution.