La déshydratation du glycérol en acroléine en phase gazeuse sur catalyseur solide a été étudiée pour comprendre la formation des sous-produits, déterminer un mécanisme réactionnel et expliquer la désactivation du catalyseur. Les expériences ont été réalisées dans un réacteur isotherme à lit fixe sous différentes conditions opératoires. Pour déterminer les chemins réactionnels de la réaction, de nombreux sous-produits ont été passés séparément sur le catalyseur. Une chromatographie gazeuse en ligne, en continu et originale a été utilisée pour analyser tous les produits de la réaction simultanément. Deux produits ont été quantifiés par chromatographie liquide et de nouveaux composés ont été identifiés par chromatographie gazeuse couplée à un spectromètre de masse. Un mécanisme réactionnel a été proposé. Pour comprendre la désactivation du catalyseur, les produits responsables du dépôt carboné ont été identifiés et la chute de la conversion du glycérol au cours du temps a été modélisée / Glycerol dehydration to form acrolein in gas phase over a solid acid catalyst was studied to understand by-products formation, to determine a detailed mechanism and to explain the deactivation process. Experiments were run in an isothermal fixed bed reactor under different operating conditions. To understand the multiple pathways of the glycerol dehydration mechanism, many by-products of the reaction were passed separately over the catalyst. An original multivalve on-line gas chromatography was used to analyze the whole reaction products continuously and simultaneously. Two products were quantified by high performance liquid chromatography, and the unknown products were identified by gas chromatography-mass spectrometry. A detailed reaction mechanism was then proposed. In order to understand the deactivation process, compounds responsible of carbon deposit were identified and the glycerol conversion fall during an experiment was modelled

O aumento da concentração de gases de efeito estufa (GEE) de fontes antropogênicas tem sido visto como uma das principais contribuições para o aquecimento global, ameaçando a vida no planeta. O dióxido de carbono (CO2) é um dos principais GEE e suas fontes geradoras estão relacionadas a processos essenciais à sociedade, como a produção de energia, produtos diversos e transporte. A conversão do CO2 parece ser uma alternativa promissora para reduzir a emissão deste gás na atmosfera. De particular interesse para este estudo, a fotorredução do CO2 a metanol pode contribuir para mitigar o problema dos GEE, gerando um importante insumo da indústria química. Assim, este estudo tem por objetivo utilizar cálculos quanto-mecânicos, como a Teoria do Funcional Densidade, para investigar um caminho para a reação de redução do CO2. A reação de redução do CO2 à ácido fórmico, formaldeído e metanol foi estudada sem a interação com o catalisador e na presença de dióxido de titânio como catalisador. Foi realizada uma comparação de cálculos em diferentes níveis teóricos e diferentes bases, com dados experimentais. Para os cálculos envolvendo o TiO2, foi utilizado o nível B3LYP/6-31G(d,p). Frequências vibracionais também foram calculadas para cada etapa, permitindo a identificação de possíveis estados de transição e estimativa de barreiras de reação (energia potencial). Cálculos de coordenada intrínseca de reação (IRC) foram empregados para confirmar que os estados de transição encontrados, estão relacionados a cada etapa estudada. A comparação da redução do dióxido de carbono a ácido fórmico, com e sem catalisador, mostrou que a presença do dióxido de titânio reduziu em mais de 25,0% a barreira reacional desta etapa

Com o aumento da consciência global sobre os riscos do Aquecimento do Planeta e de suas possíveis causas ficou claro que é necessário desenvolver ou adaptar processos industriais de maneira a aproveitar dejetos como o CO2. Dentre as formas de se aproveitar o CO2, destaca-se a ciclo-adição aos epóxidos, com a formação de ciclocarbonatos. A reação é tecnologicamente interessante, pois ciclocarbonatos possuem diversas aplicações como solventes polares apróticos, eletrólitos e matéria prima para compostos como purinas, carbamatos, glicóis, policarbonato e outros. Para que a reação ocorra em tempo e condições viáveis, há a necessidade de se trabalhar com catalisadores. Foram reportados muitos catalisadores ao longo dos anos. Dentre os catalisadores mais comumente utilizados, destacam-se os sais orgânicos. Porém o estudo sobre modelos cinéticos e mecanismo de reação ainda carecem de mais atenção. Desta forma este trabalho propõe-se a estudar esta parte, através de experimentos cinéticos, modelos teóricos e cálculos de química quântica. Para isto escolheu-se estudar a ação catalítica do brometo de 1-propil-4-azo-1-azôniobiciclo[2,2,2]octano (P-DABCO) frente a um catalisador bem descrito na literatura, o brometo de tetrapropilamônio (TPA). / Nowadays mankind are becoming more aware about Global Warming risks and its possible causes. With that in mind, it is necessary to develop or to adapt industrial processes to use some wastes like CO2. One of the best strategies to utilize CO2 is to convert it to cyclic carbonate through cyclic addition reaction to epoxides. This reaction is important because cyclic carbonates have other useful applications. For example, they can be used as polar aprotic solvents, electrolytes and as starting material for other compounds like purine, carbamates, glycols, polycarbonate, among others. However, the cyclic addition reaction must be catalyzed so as to get the desired product in short possible time and under soft conditions. Many catalysts have been reported in the literature that can be used for the cyclic addition reaction, with the organic salts being very common ones. Most of these reports focus on the efficiency of the catalyst and little attention has been paid to the reaction kinetics models and reaction mechanisms. Thus, we intend to study this part. For this purpose, we will do kinetics experiments, theoretical models and quantum chemistry calculation. The 1-alkyl-4-aza-1-azaniabicyclo[2.2.2]octyl bromide was chosen to this work and will be compared with tetrapropylammonium bromide that is known in the literature.

Dans le contexte de la valorisation de la biomasse par catalyse hétérogène, la chimie théorique est essentielle pour guider la détermination de la nature des sites actifs en combinaison avec des caractérisations expérimentales. Ensuite, le mécanisme de réaction peut être étudié pour déterminer l’état de transition et intermédiaire déterminant la vitesse et ensuite concevoir de meilleurs catalyseurs in silico. Nous avons mis en œuvre cette approche dans plusieurs réactions impliquant des alcools qui jouent un rôle clé dans le passage du pétrole à la biomasse comme source de matière première pour les produits chimiques de commodités ou spécialités. Tout d'abord, nous nous sommes concentrés sur l'oxydation des alcools en phase liquide par l'oxygène, une réaction qui nécessite généralement un environnement alcalin, ce qui nuit à l'économie d’atomes du processus car il génère le sel carboxylate au lieu de l'acide carboxylique. Nous avons proposé un modèle d'interface métal / eau basique incluant l'adsorption d'anion hydroxyde. Cet anion charge la surface métallique et modifie son activité catalytique. Ce modèle a tout d’abord été validé en comparant l’activité prédite de Au et de Pt en présence et en l’absence de base, puis a été utilisé pour étudier l’oxydation d’éthoxylates d’alcool par des bimétalliques. Ensuite, nous sommes passés à la déshydratation en phase gazeuse d’alcools en C3 et C4 en utilisant des catalyseurs à base de phosphate. La modélisation des surfaces s’est basée sur des caractérisations expérimentales. La couverture moléculaire de l'eau à la surface en fonction de la pression et de la température a été établie à l'aide de la thermodynamique ab initio. Les simulations de spectres infrarouges d'adsorption de CO, NH3 et C2H2 nous ont permis d'identifier les sites acido-basiques qui jouent un rôle important dans l'investigation du mécanisme de réaction qui a suivi. / In the context of biomass valorization by heterogeneous catalysis, computational chemistry is key to provide guidance to establish the nature of the active sites in combination with experimental characterizations. Then, the reaction mechanism can be studied to determine the rate determining transition state and intermediate and further design in silico better catalysts. We implemented this approach in several reactions involving alcohols that are key in the shift from a petroleum chemical feedstock to a biomass-based feedstock. Firstly, we focused on liquid phase alcohol oxidation by oxygen, a reaction that generally requires an alkaline environment, which is detrimental to the atom economy of the process since it generates the carboxylate salt instead of the carboxylic acid. We proposed a model of metal/basic water interface that includes the adsorption of hydroxide anion. It charges the metallic surface and modifies its catalytic activity. This model was first validated comparing the predicted activity of Au and Pt in presence and in absence of a base, and then used oxidation of alcohol ethoxylates by bimetals. Then, we switched to gas phase dehydration of C3 and C4 alcohols using phosphate-based catalysts. The modeling of the surfaces was based on experimental characterizations. The molecular coverage of water on the surface in function of the pressure and temperature was established using ab initio thermodynamic. The simulations of infrared spectra of CO, NH3 and C2H2 adsorption allowed us to identify the acido-basic sites which play an important role in the reaction mechanism investigation that followed.

<p>Ribose 5-phosphate isomerase (Rpi) is one of the major enzymes of the pentose phosphate pathway, where it catalyses the inter-conversion of ribose 5-phosphate (R5P) and ribulose 5-phosphate. Two forms of this isomerase with no significant amino acid sequence similarity exist, RpiA and RpiB. This thesis describes RpiB from the organisms <i>Mycobacterium tuberculosis</i> (<i>Mt</i>) and <i>Escherichia coli</i> (<i>Ec</i>) from a structural and functional point of view.</p><p>Since the <i>E. coli</i> genome encodes both an RpiA and an RpiB, which generally is not expressed, it has been proposed that <i>Ec</i>RpiB has a different role as an allose-6-phosphate isomerase. Activity measurements presented here show that <i>Ec</i>RpiB does have this second activity. </p><p>In the <i>M. tuberculosis</i> genome there is only a gene for RpiB. The crystal structure of <i>Mt</i>RpiB was solved in complex with several different inhibitors designed to mimic the reaction intermediate as well as with the substrate, R5P. The organisation of the active site in these structures could be used to derive the reaction mechanism for <i>Mt</i>RpiB and for other RpiBs in general. Activity measurements of <i>Mt</i>RpiB showed that it can catalyse the R5P isomerisation, but not the allose 6-phosphate reaction. Differences observed in the active site between <i>Ec</i>RpiB and <i>Mt</i>RpiB explain these kinetic results. </p><p>Activity measurements and a structure of an <i>Ec</i>RpiB mutant, where histidine99 was changed to asparagine, implies that RpiB catalyses the first step of the reaction in which the sugar ring must be opened, and gives a possible explanation for how this could occur. </p><p>Inhibition studies have uncovered a compound that selectively inhibits <i>Mt</i>RpiB over RpiA from spinach, which is homologous to the human RpiA. Differences in the inhibition patterns and active site residues of these two species’ Rpi may provide information for future virtual screening approaches, with the aim of discovering new anti-tuberculosis agents.</p>

Ribose 5-phosphate isomerase (Rpi) is one of the major enzymes of the pentose phosphate pathway, where it catalyses the inter-conversion of ribose 5-phosphate (R5P) and ribulose 5-phosphate. Two forms of this isomerase with no significant amino acid sequence similarity exist, RpiA and RpiB. This thesis describes RpiB from the organisms Mycobacterium tuberculosis (Mt) and Escherichia coli (Ec) from a structural and functional point of view. Since the E. coli genome encodes both an RpiA and an RpiB, which generally is not expressed, it has been proposed that EcRpiB has a different role as an allose-6-phosphate isomerase. Activity measurements presented here show that EcRpiB does have this second activity. In the M. tuberculosis genome there is only a gene for RpiB. The crystal structure of MtRpiB was solved in complex with several different inhibitors designed to mimic the reaction intermediate as well as with the substrate, R5P. The organisation of the active site in these structures could be used to derive the reaction mechanism for MtRpiB and for other RpiBs in general. Activity measurements of MtRpiB showed that it can catalyse the R5P isomerisation, but not the allose 6-phosphate reaction. Differences observed in the active site between EcRpiB and MtRpiB explain these kinetic results. Activity measurements and a structure of an EcRpiB mutant, where histidine99 was changed to asparagine, implies that RpiB catalyses the first step of the reaction in which the sugar ring must be opened, and gives a possible explanation for how this could occur. Inhibition studies have uncovered a compound that selectively inhibits MtRpiB over RpiA from spinach, which is homologous to the human RpiA. Differences in the inhibition patterns and active site residues of these two species’ Rpi may provide information for future virtual screening approaches, with the aim of discovering new anti-tuberculosis agents.

The crystal structures of two thermostable carboxylesterase Est30 and Est55 from Geobacillus stearothermophilus were determined to help understand their functions and applications in industry or medicine. The crystal structure of Est30 was determined at 1.63 Å resolution by the multiple anomalous dispersion method. The two-domain Est30 structure showed a large domain with a modified alpha/beta hydrolase core including a seven, rather than an eight-stranded beta sheet, and a smaller cap domain comprising three alpha helices. A 100 Da tetrahedral ligand, propyl acetate, was observed to be covalently bound to the side chain of Ser94 in the catalytic triad. This ligand complex represents the first tetrahedral intermediate in the reaction mechanism. Therefore, this Est30 crystal structure will help understand the mode of action of all enzymes in the serine hydrolase superfamily. Est55 is a bacterial homologue of the mammalian carboxylesterases involved in hydrolysis and detoxification of numerous peptides and drugs and in prodrug activation. Est55 crystals were grown at pH 6.2 and pH 6.8 and the structures were determined at resolutions of 2.0 and 1.58 Å respectively. Est55 folds into three domains, a catalytic domain, an α/β domain and a regulatory domain. This structure is in an inactive form; the side chain of His409, one of the catalytic triad residues, is pointing away from the active site. Moreover, the adjacent Cys408 is triply oxidized and lies in the oxyanion hole, which would block the entry of substrate to its binding site. This structure suggested a self-inactivation mechanism, however, Cys408 is not essential for enzyme activity. Mutation of Cys408 showed that hydrophobic side chains at this position were favorable, while polar serine was unfavorable for enzyme activity. Both Est30 and Est55 were shown to hydrolyze the prodrug CPT-11 into the active form SN-38. Therefore, Est30 and Est55 are potential candidates for use with irinotecan in cancer therapy. The catalytic efficiency (kcat/Km) of Est30 is about 10-fold lower than that of Est55. The effects of the Cys408 substitutions on Est55 activity differed for the two substrates, p-NP butyrate and CPT-11. Mutant C408V may provide a more stable form of Est55.

The generation of nanostructured assemblies with complex (three-dimensional, 3D) self-assembled morphologies and with complex (multicomponent) tailorable inorganic compositions is of considerable technological and scientific interest. This research demonstrates self-assembled 3D organic templates of biogenic origin can be converted into replicas comprised of numerous other functional nanocrystalline inorganic materials. Nature provides a spectacular variety of biologically-assembled 3D organic structures with intricate, hierarchical (macro-to-micro-to-nanoscale) morphologies. Morphology-preserving chemical conversion of such readily available, structurally complex templates will provide a framework for chemical conversion of synthetic organic templates and, potentially, production of organic/inorganic composites. Four research thrusts are detailed in this dissertation. First, chemical conversion of a nanostructured bioorganic template into a multicomponent oxide compound (tetragonal BaTiO₃ via layer-by-layer surface sol-gel coating and subsequent morphology-preserving microwave hydrothermal processing was demonstrated. Second, photoluminescence was imparted to bioorganic template structures through morphology-preserving chemical conversion to exhibit both the dramatic change in properties such processing can provide, and the potential utility of chemically transformed templates in anti-counterfeiting / authentication applications. Third, the reaction mechanism(s) for morphology-preserving microwave hydrothermal conversion of TiO₂ to BaTiO₃, were studied with the aid of Au inert markers on single crystal rutile TiO₂. Finally, constructive coating techniques (SSG) and moderate temperature (< 500C) heat treatments were utilized to modify and replicate structural color and were coupled with deconstructive focused ion beam microsurgery to prepare samples for microscale structure/property interrogation. Specifically, the effects of coating thickness and coating composition on reflection spectra of structurally colored templates were examined. Also, the effects of the replacement of natural material with higher index of refraction inorganic materials on optical properties were studied. The three processing research thrusts constituting chapters 1, 2 and 4 take advantage of moderate temperature processing to ensure nanocrystalline materials, either for shape preservation or to prevent scattering in optical applications. The research thrust presented in chapter 3 examines hydrothermal conversion of TiO₂ to BaTiO₃, not only to identify the reaction mechanism(s) involved in hydrothermal conversion under morphology-preserving conditions, but also to introduce inert marker experiments to the field of microwave hydrothermal processing.

Vergasungsprozesse, bei denen kohlenstoffhaltige Ausgangsstoffe in ein vorwiegend aus Wasserstoff und Kohlenmonoxid bestehendes Synthesegas umgewandelt werden, stellen eine Schlüsseltechnologie für eine zukünftige nachhaltige Rohstoffnutzung dar. Der Grund für den Einsatz von Hochdruckverfahren liegt in der Steigerung der Wirtschaftlichkeit. Die numerische Simulation der Hochdruckvergasung hat große Schnittmengen mit der Verbrennungssimulation. So kann die Flammenzone mit Hilfe von Verbrennungsmodellen beschrieben werden. In der Arbeit wurden Simulationen einer Versuchsanlage für Hochdruckvergasung mit Hilfe kommerzieller CFD-Codes und mit Hilfe des quelloffenen Codes OpenFOAM durchgeführt. Eine Analyse des Verbrennungsmodells ergab, dass die wesentlichen Reaktionen im Reformierungsbereich, wo kein freier Sauerstoff mehr vorhanden ist, nur unzureichend abgebildet wurden. Durch die Verwendung eines alternativen Ansatzes konnte der Modellierungsfehler deutlich reduziert werden.

Les papiers récupérés sont de plus en plus utilisés pour fabriquer du papier recyclé de haute blancheur. La ligne de recyclage inclut entre autres les opérations de désencrage et de blanchiment, le peroxyde d’hydrogène (H2O2) étant le réactif blanchissant le plus utilisé en milieu alcalin (stade P). Son efficacité est toutefois limitée car il est peu ou moyennement réactif sur les fonctions azoïques des colorants papetiers. L’objectif de cette étude était donc d’améliorer l’élimination des colorants azoïques lors d’un stade P.L'amélioration du stade P utilisé en délignification des pâtes chimiques a fait l’objet de nombreuses études. En particulier, l’activation ou la catalyse de H2O2 par des complexes cuivre(II)-phénanthroline (Cu-Phen) présentant des résultats très intéressants, des essais de blanchiment de pâtes désencrées et colorées ont été entrepris. Le système H2O2/Cu-Phen s’est également révélé efficace en décoloration, mais le mécanisme n’avait alors pas été étudié.L’objectif de ce travail était donc de déterminer dans quel cas et pourquoi le complexe cuivre(II)-phénanthroline était capable d’améliorer la décoloration de fibres cellulosiques colorées. Trois questions intermédiaires se sont posées : (1) quel effet Cu-Phen a-t-il sur le colorant isolé? (2) la décoloration d’une pâte de fibres colorées par H2O2 est-elle améliorée par Cu-Phen? (3) par quel mécanisme la décoloration est-elle rendue plus efficace?Le travail a donc été organisé en trois études : (1) caractérisation des colorants sélectionnés et du complexe en l’absence d’oxydant et examen des interactions entre les deux, (2) étude et optimisation paramétrique de H2O2/Cu-Phen pour la décoloration de pâtes colorées, (3) étude du mécanisme d’oxydation en milieu aqueux, en l’absence et en présence de cellulose.Ce travail s’est appuyé sur de nombreuses techniques analytiques (spectroscopies RMN, FTIR, UV-vis et RPE ; ESI-MS) et des calculs de spéciation. Il a prouvé que le complexe Cu-Phen en présence de H2O2 améliorait la décoloration de colorants azoïques, avec ou sans fibres cellulosiques. Il a été mis en évidence que la phénanthroline agissait comme un stabilisant permettant d’ajuster la solubilité, la stabilité et le potentiel d’oxydo-réduction du cuivre(II), mais qu’elle n’était pas indispensable. De plus, le pH du milieu est également un paramètre clé, jouant à la fois sur l’activité du complexe et sur ses interactions avec le substrat. Le substrat (colorant mais aussi cellulose) s’est trouvé fortement dégradé par ce système H2O2/Cu-Phen. Les résultats corroborent l’hypothèse de l’oxydation du substrat par les radicaux hydroxyles issus de la décomposition de H2O2, plutôt que par H2O2 lui-même, ce mécanisme étant l’une des étapes d’un cycle catalytique.La recherche menée et les résultats obtenus sont applicables non seulement à l’amélioration du blanchiment des pâtes désencrées, mais aussi au traitement d’effluents colorés dans les industries du papier et du textile. / Today, recovered papers are reused for the manufacture of bright paper after deinking and fiber bleaching, which generally starts with an alkaline hydrogen peroxide stage (H2O2). However, the efficiency of H2O2 is often limited due to its low reactivity on the azo groups of paper dyes contained in recovered papers. The goal of this study was to improve the removal of these azo dyes by H2O2.The improvement of H2O2 bleaching has been studied thoroughly in the context of chemical pulp delignification. In particular, the activation or catalysis of H2O2 by copper(II)-phenanthroline complexes (Cu-Phen) was found to be very effective. This inspired a preliminary bleaching study on deinked pulp and dyed pulp, and resulted in significant improvement of dye removal, which gave birth to our project.The purpose of this work was to determine to what extent copper(II)-phenanthroline could improve the hydrogen peroxide color-stripping of dyed cellulosic fibers, and how. To answer this question, three intermediate issues were addressed: (1) does Cu-Phen alone have an effect on the dye? (2) does Cu-Phen improve the color-stripping of a dyed pulp by H2O2? (3) how does the H2O2/Cu-Phen system enhance the dye-color-stripping efficiency?This work was thus divided into three studies: (1) the selected dyes and the complex were characterized in the absence of any oxidant and the interactions between the two were examined, (2) the H2O2/Cu-Phen system was applied on two dyed pulps to assess their color-stripping potential and to attempt to optimize it, and (3) the oxidation mechanism was investigated via trials in aqueous solution, with and without cellulose.Using several analytical techniques (NMR, FTIR, UV-vis and EPR spectroscopy; ESI-MS) and speciation calculations, this work proved that the Cu-Phen complex enhanced H2O2 for the color-stripping of azo dyes, with and without fibers. It also provided evidence that phenanthroline acted as a stabilizer to adjust the solubility, stability and redox potential of copper(II), but may not be indispensable. The substrate (dyes but also cellulose) was strongly degraded by the H2O2/Cu-Phen system. The results of the mechanistic study supported the hypothesis of substrate oxidation by radicals produced via decomposition of H2O2 rather than by hydrogen peroxide itself. This mechanism, strongly dependent on the pH, is probably part of a catalytic cycle.Finally, along with further research proposed based on our conclusions, this thesis should contribute to the improvement of deinked pulp bleaching as well as wastewater treatment in the pulp and textile industries.