La présence d’un récepteur de type RXR a récemment été rapporté chez la pensée de mer, Renilla koellikeri, de même que chez d’autres anthozoaires, et le NO semble jouer des différents rôles physiologiques, chez plusieurs cnidaires. L’acide rétinoïque (AR) et le monoxyde d’azote (NO) sont connus pour leur implication dans l’induction de la croissance des neurites chez les vertébrés ainsi que chez les invertébrés. Mais jusqu’à présent, aucun rôle de ces agents n’a encore été identifié chez ce phylum ancien des invertébrés. Dans le but de montrer que ces agents morphogénétiques ont un rôle dans le développement neuronal chez ces ancêtres des métazoaires bilatéraux, nous avons utilisé des cultures primaires de cellules du cnidaire anthozoaire Renilla koellikeri (pensée de mer), doté d’un système nerveux des plus primitif. Nous avons trouvé que les deux types d’acide rétinoïque, 9-cis et 11-trans, induisent une prolifération cellulaire dose-dépendante en fonction du temps dans les boîtes de pétri enduites de polylysine. Les cultures cellulaires exposées à l’acide rétinoïque dans les boîtes sans polylysine montrent une différenciation en des cellules épithéliales. D’autre part, le NO induit exclusivement une différenciation neuronale dans les boîtes enduites de polylysine. Aucun autre type de cellules subit un différenciation en présence de NO et la densité des cellules dédifférenciées a diminué. Les prolongements des neurones différenciés semblent s’enchevêtrer et former un réseau neuronal assez dense. L’ensemble de ces observations suggère que l’acide rétinoïque, contrairement à NO, est associé à l’activité mitotique, et que l’acide rétinoïque et le NO sont impliqués différemment dans la spécification cellulaire, respectivement épithéliale et neuronale, chez la pensée de mer. Le type d’action déclenchée, qu’il soit la mitogénèse ou la différenciation (épithéliale ou neuronale), varie alors selon l’état d’adhésion des cellules au substrat. Comme les données moléculaires et paléontologiques rapprochent les cnidaires, telle la pensée de mer, des ancêtres des eumétazoaires, nos résultats suggèrent que le rôle morphogénétique de l’acide rétinoïque et du NO est enraciné dans l’ancêtre commun de tous les métazoaires. / Retinoic acid receptors were recently reported in the sea pansy, Renilla koellikeri, and in other anthozoans, and NO seems to play various roles in several cnidarians. Retinoic acid (RA) and nitric oxide (NO) are known for their implication in inducing neurite outgrowth in both vertebrates and invertebrates. But so far, no role of these agents has been identified in this basal metazoan phylum. In order to show that these agents have a morphogenetic role in neuronal development in the ancestors of bilateral metazoan. We used primary cultures of cells from the cnidarian anthozoan Renilla koellikeri (sea pansy), with the most primary nervous system. We found that both 9-cis and 11-trans retinoic acid induced cell proliferation in dose- and time-dependant manners in petri dishes coated with polylysine. Cell cultures exposed to retinoic acid in dishes devoid of polylysine were observed to differentiate into epithelial cells. On the other hand, NO induced extensive neurite outgrowth in polylysine-coated culture dishes. No other celle type underwent differentiation in the presence of NO, and the density of dedifferentiated cells was reduced. The neurites of the differentiating neurons appeared to intertwine and form a loose nerve net. These observations suggest that retinoic acid, but not NO, has mitogenic activity, and that retinoic acid and NO are differentially involved in nerve cell specification in the sea pansy. The type of action, mitogenesis or cell differenciation (epithelial or neural), depends on the degree of cell adhesion to substrate. As both molecular and paleontological evidence place cnidarians such as the sea pansy closest to the eumetazoan ancestor, our results suggest that the morphogenetic role of retinoic acid and NO was rooted in the commun ancestor of all metazoans.

Mémoire numérisé par la Division de la gestion de documents et des archives de l'Université de Montréal

This study devised a method to detect Ribeiroia ondatrae (class Trematoda) in water-bodies using environmental DNA (eDNA) collected from filtered water samples from selected ponds in the USA and Canada. Species-specific PCR primers were designed to target the Internal Transcribed Spacer-2 (ITS-2) region of the parasite’s genome. The qualitative PCR method was 70% (n=10) accurate in detecting R. ondatrae in ponds previously found to contain the parasite, while the qPCR method was 88.9% (n=9). To examine how the retinoic acid (RA) pathway gene expression may be perturbed during R. ondatrae infections, leading to limb development abnormalities in the wood frog (Lithobates sylvaticus). Multiple sequence alignments were used to design degenerate PCR primers to eight RA biosynthesis genes, but only two gene fragments were identified using this approach. Without effective primer sets it was not possible to measure changes in gene expression in infected frogs.

This study devised a method to detect Ribeiroia ondatrae (class Trematoda) in water-bodies using environmental DNA (eDNA) collected from filtered water samples from selected ponds in the USA and Canada. Species-specific PCR primers were designed to target the Internal Transcribed Spacer-2 (ITS-2) region of the parasite’s genome. The qualitative PCR method was 70% (n=10) accurate in detecting R. ondatrae in ponds previously found to contain the parasite, while the qPCR method was 88.9% (n=9). To examine how the retinoic acid (RA) pathway gene expression may be perturbed during R. ondatrae infections, leading to limb development abnormalities in the wood frog (Lithobates sylvaticus). Multiple sequence alignments were used to design degenerate PCR primers to eight RA biosynthesis genes, but only two gene fragments were identified using this approach. Without effective primer sets it was not possible to measure changes in gene expression in infected frogs.

Dieser Beitrag ist mit Zustimmung des Rechteinhabers aufgrund einer (DFG-geförderten) Allianz- bzw. Nationallizenz frei zugänglich.

Diss. (sammanfattning) Umeå : Univ., 2007. / Härtill 4 uppsatser.

En l’absence de structures tridimensionnelles expérimentales des cytochromes P450 CYP26A1, CYP26B1 et CYP26C1, la caractérisation de leur substrats et ligands s’est basée sur l’analyse des modèles structuraux obtenus par modélisation par homologie avec la structure expérimentale du cytochrome P450 CYP120. La justesse des modèles a été validée par l’amarrage de l’acide rétinoïque all-trans dans des configurations compatibles avec les métabolites attendus. L’amarrage d’agonistes et d’antagonistes des récepteurs nucléaires RARs prédirent l’acide tazaroténique (TA) et l’adapalène comme des substrats potentiels. Les expériences in vitro confirmèrent la métabolisation de ces 2 médicaments par les CYP26s. L’analyse de la cinétique de sulfoxidation du TA par CYP26A1 and CYP26B1 a permis d’établir le TA comme la référence contrôle de l’activité de ces enzymes. Puis, la comparaison des modèles des CYP26s avec la structure cristalline de CYP2C8 a permis d’identifier des similarités structurales de leurs inhibiteurs. Une corrélation entre l’inhibition de CYP26A1 et de CYP2C8 par des inhibiteurs connus de CYP2C8 a été démontrée après détermination de leurs IC50 pour CYP26A1 et CYP26B1 en utilisant le TA comme substrat de référence. La mesure de l’inhibition in vitro fut ensuite utilisée pour évaluer la possibilité que les CYP26s soient impliquées dans des interactions médicamenteuses observées pour certaines molécules. Cette thèse caractérise et appuie le rôle encore mal connu des CYP26s dans la métabolisation in vivo de certains xénobiotiques ainsi que l’effet potentiel de leur inhibition qui favoriserait la survenue d'effets indésirables. / Without crystal structures to study the CYP26 family of drug metabolizing enzymes, homology models were used to characterize CYP26A1, CYP26B1 and CYP26C1 and to identify substrates and inhibitors of the enzymes. Computational models of each isoform based on structural homology to CYP120 were validated by docking all-trans retinoic acid, an endogenous ligand of CYP26. Docking of retinoic acid receptor agonists and antagonists suggested that tazarotenic acid (TA) and adapalene may be metabolic substrates for CYP26, data which was confirmed using in vitro metabolite identification assays. Phenotyping experiments determined that CYP26s played a major role in the metabolism of these compounds in vitro. The kinetics of TA sulfoxidation by CYP26A1 and CYP26B1 were characterized and the compound was proposed as an in vitro probe of CYP26 activity in single enzyme expression systems. Structural characterization efforts identified similarities between the CYP26 homology models and the known crystal structure of CYP2C8, in agreement with previously published reports. Using TA as a probe, the IC50’s of known CYP2C8 inhibitors was measured against CYP26A1 and CYP26B1, with a statistically significant correlation observed between CYP26A1 and CYP2C8. Additional in vitro and computational experiments were used to characterize the inhibition mechanism for the most potent inhibitors. The observed in vitro inhibition was then used to predict the likelihood of CYP26 inhibition being involved in clinically relevant drug interactions. As a whole, the results presented support the role of the CYP26s in the metabolism of xenobiotic compounds as well as in potential in vivo drug interactions.

Les récepteurs nucléaires de l’acide rétinoïque (AR) appelés RAR, se comportent comme des facteurs de transcription inductibles par le ligand. La transcription des gènes cibles induite par l’AR, nécessite la fixation des RAR au niveau de séquences spécifiques des promoteurs et met en jeu des changements conformationnels des récepteurs qui contrôlent l’association/dissociation de toute une panoplie de corégulateurs. Cependant, en plus de ce modèle génomique et nucléaire bien établi, l’équipe du Dr Cécile Rochette-Egly a montré récemment que l’AR a aussi des effets non-génomiques et induit rapidement la voie de signalisation p38MAPK/MSK1 qui ensuite cible les RAR pour des cascades de phosphorylations et module la transcription des gènes cibles. Pendant mon travail de thèse, j’ai mis en exergue trois nouveaux concepts originaux du mécanisme d’action du sous-type RARα. J’ai montré qu’une sous-population de RARα est présente dans des microdomaines membranaires, les radeaux lipiques ou “lipid rafts”où elle interagit avec les protéines Gαq. Cette interaction est le signal des effets non génomiques de l’AR, l’activation de la voie de la p38MAPK. Ces effets ont été corrélés à l’activité des gènes cibles de l’AR, prouvant ainsi leur nécessité. J’ai identifié un nouveau partenaire de RARα, la profiline IIA. J’ai analysé le mécanisme moléculaire de l’interaction et démontré qu’elle a lieu dans le noyau. La profiline IIA s’est révélée être un régulateur des effects génomiques de RARα et est recrutée avec RARα au niveau des promoteurs des gènes cibles. Finalement j’ai mis en évidence une nouvelle fonction de RARα dans le contrôle de l’adhésion et de l’étalement des cellules. D’où l’hypothèse de nouveaux effets génomiques de RARα avec la profiline IIA dans le contrôle de l‘expression des protéines d’adhésion. Cependant, de manière inattendue, j ‘ai identifié une nouvelle population de RARα dans le cytoplasme de ces cellules. D’où l’hypothèse de nouveaux effets non génomiques dans le cytoplasme, via l’interaction de RARα avec des protéines d’adhésion. / Nuclear retinoic acid (RA) receptors (RARs) are ligand-dependent regulators of transcription. Their transcriptional activity relies mainly on their recruitment to specific DNA response elements and on their interactions with several coregulators at the ligand-binding domain. In addition to these classical genomic effects, the team of C. Rochette-Egly demonstrated that RA also induces the rapid activation of the p38MAPK/MSK1 pathway with characteristic downstream consequences on thephosphorylation of RARs and the expression of their target genes. Here I highlighted three novel paradigms in the field of the RARα subtype. I found that a fraction of the cellular RARα pool is present in membrane lipid rafts, where it interacts with G protein alpha Q in response to RA. This interaction is the signal for nongenomic effects, i.e. the activation of p38MAPK and of the downstream kinase MSK1. These effects have been correlated to the activation of RA-target genes, highlighting its physiological relevance. I identified a new binding partner of RARα, profilin IIA. I deciphered the mechanism of the interaction and found that it occurs in nuclei. Remarkably, profilin IIA modulates positively the genomic effects of RARα and is recruited with RARα to target genes promoters. Finally, in an attempt to decipher the relevance of the RARα interaction with profilin IIA, I found that RARα controls cell adhesion and spreading. This might suggest a novel genomic functionof RARα and profiling in the control of the expression of genes involved in adhesion. However, preliminary experiments indicate that a pool of RARα is present in the cytosol, suggesting also novel nongenomic effects. Whether RARα controls adhesion via its interaction in the cytosol proteins involved in adhesion will require further investigations.

Made available in DSpace on 2014-12-17T14:03:36Z (GMT). No. of bitstreams: 1 BrunaLLM_TESE.pdf: 3672151 bytes, checksum: 3a91fdec3101fa0f0ebdb652c2960bda (MD5) Previous issue date: 2013-12-20 / Conselho Nacional de Desenvolvimento Cient?fico e Tecnol?gico / Nutritional status is an important determinant to the response against Leishmania infection, although few studies have characterized the molecular basis for the association found between malnutrition and the disease. Vitamin A supplementation has long been used in developing countries to prevent mortality by diarrheal and respiratory diseases, but there are no studies on the role of vitamin A in Leishmania infection, although we and others have found vitamin A deficiency in visceral Leishmaniasis (VL). Regulatory T cells are induced in vitro by vitamin A metabolites and are considered important cells implicated T CD4+ cell suppression in human VL. This work aimed to examine the correlation of nutritional status and the effect of vitamin A in the response against Leishmania infantum infection. A total of 179 children were studied: 31 had active VL, 33 VL history, 44 were DTH+ and 71 were DTH- and had negative antibody to Leishmania (DTH-/Ac-). Peripheral blood monuclear cells were isolated in a subgroup of 10 active VL and 16 DTH-/Ac- children and cultivated for 20h under 5 different conditions: 1) Medium, 2) Soluble promastigote L. infantum antigens (SLA), 3) All-trans retinoic acid (ATRA), 4) SLA + ATRA and 5) Concanavalin A. T CD4+CD25highFoxp3+, T CD4+CD25-Foxp3- and CD14+ monocytes were stained and studied by flow cytometry for IL-10, TGF-β and IL-17 production. Nutritional status was compromised in VL children, which presented lower BMI/Age and retinol concentrations when compared to healthy controls. We found a negative correlation between nutritional status (measured by BMI/Age and serum retinol) and anti-Leishmania antibodies and acute phase proteins. There was no correlation between nutritional status and parasite load. ATRA presented a dual effect in Treg cells and monocytes: In healthy children (DTH-/Ac-), it induced a regulatory response, increasing IL-10 and TGF-β production; in VL children it modulated the immune response, preventing increased IL-10 production after SLA stimulation. Furthermore, we found a positive correlation between BMI/Age and IL-17 production and negative correlation between serum retinol and IL-10 and TGF-β production in T CD4+CD25highFoxp3+ cells after SLA stimulus. Our results show a potential dual role of vitamin A in the immune system: improvement of regulatory profile during homeostasis and down modulation of IL-10 in Treg cells and monocytes during symptomatic VL. Therefore, the use of vitamin A concomitant to VL therapy might improve recovery from disease status in Leishmania infantum infection / O estado nutricional ? importante determinante da resposta ? infec??o por Leishmania. No entanto, s?o poucos os trabalhos que caracterizem as bases moleculares das associa??es encontradas entre a desnutri??o e a doen?a. A suplementa??o de vitamina A ? utilizada em pa?ses em desenvolvimento para reduzir a mortalidade por diarreia e doen?as respirat?rias. Apesar disso, n?o existem estudos sobre o papel da vitamina A na infec??o por Leishmania apesar de nosso grupo e outros terem demonstrando a defici?ncia de vitamina A durante a leishmaniose visceral (LV). As c?lulas T regulat?rias s?o consideradas c?lulas supressoras durante a LV e s?o induzidas por metab?litos de vitamina A. Este trabalho teve como objetivo verificar a correla??o do estado nutricional e o efeito da vitamina A na resposta frente ? infec??o por Leishmania infantum. Foram estudadas 179 crian?as, sendo 31 casos de LV ativa, 33 com hist?ria pregressa de LV, 44 DTH+ e 71 DTH- e Anticorpo anti-Leishmania negativo (DTH-/Ac-). C?lulas mononucleadas de sangue perif?rico foram isoladas em um subgrupo de 10 crian?as com LV e 16 DTH-/Ac-, sendo cultivadas por 20h sob as seguintes condi??es: 1) Meio, 2) Ant?genos sol?veis de promastigotas de L. infantum (SLA), 3) ?cido all-trans retin?ico (ATRA), 4) SLA + ATRA e 5) Concanavalina A. As c?lulas T CD4+CD25highFoxp3+, T CD4+CD25-Foxp3- e mon?citos CD14+ foram marcadas e estudadas por citometria de fluxo quanto ? produ??o de IL-10, TGF-β e IL-17. O estado nutricional apresentou-se comprometido nas crian?as com LV, que apresentaram menor IMC/idade e baixas concentra??es de retinol s?rico quando comparadas aos controles sadios. Observou-se correla??o negativa entre o estado nutricional (medido por ?ndice de Massa Corporal/Idade e retinol s?rico) e anticorpos anti-Leishmania e prote?nas de fase aguda. N?o foi encontrada correla??o entre o estado nutricional e a carga parasit?ria. O ATRA apresentou efeito distinto nas c?lulas Treg e mon?citos: Em crian?as saud?veis (DTH-/Ac-), induziu resposta regulat?ria, com aumento na produ??o de IL-10 e TGF-β; e, em crian?as com LV, modulou a resposta imune, diminuindo a produ??o de IL-10 ap?s o est?mulo com SLA. Foi encontrada correla??o positiva entre o IMC/Idade e a produ??o de IL-17 e correla??o negativa entre o retinol s?rico e a produ??o de IL-10 e TGF-β nas c?luas T CD4+CD25highFoxp3+ ap?s est?mulo com SLA. Os dados deste estudo permitem concluir que o estado nutricional comprometido durante a LV ? correlacionado com a resposta imune e inflamat?ria frente ? Leishmania. Al?m disso, possivelmente, a vitamina A apresenta duplo efeito na resposta imune: em crian?as sadias, promove resposta regulat?ria; durante a LV, reduz a produ??o de IL-10 em c?lulas Treg e mon?citos. Dessa forma, o uso de vitamina A durante a LV pode promover a recupera??o de pacientes em tratamento para a doen?a

Os tumores hipofisários representam cerca de 10% a 15% das neoplasias intracranianas. Embora a etiopatogenia ainda não seja plenamente caracterizada, muitos mecanismos moleculares envolvidos na tumorigênese hipofisária já foram desvendados. Utilizandose da metodologia de arranjos de cDNA contendo aproximadamente 20.000 genes, nosso grupo recentemente comparou a expressão de duas condições distintas: um pool de quatro adenomas hipofisários clinicamente não funcionantes e a metástase de um carcinoma hipofisário não funcionante. Vários genes mostraram-se diferencialmente expressos, entre eles, CRABP1 (cellular retinoic acid binding protein 1), CRABP2 (cellular retinoic acid binding protein 2), GRP (gastrin-releasing peptide) e RERG (RAS-like, estrogen-regulated, growth inhibitor). Este estudo visou avaliar a expressão desses quatro genes em uma série de 59 adenomas hipofisários (30 adenomas clinicamente não funcionantes, 13 somatotrofinomas, 8 corticotrofinomas e 8 prolactinomas), comparando cada grupo tumoral com um conjunto de tecidos hipofisários normais. Enquanto os prolactinomas demonstraram expressão reduzida do RNAm dos genes CRABP1 e CRABP2 quando comparados ao grupo de tecidos normais, os somatotrofinomas apresentaram expressão reduzida apenas do RNAm de CRABP2. Os adenomas clinicamente não funcionantes, por sua vez, demonstraram menor expressão do RNAm de GRP e maior expressão do RNAm de RERG quando comparados ao grupo de hipófises normais. Portanto, observou-se que tanto o gene CRABP1 quanto os genes CRABP2, GRP e RERG apresentaram diferenças na expressão do transcrito entre os grupos de adenomas de hipófise, contudo, seu papel na tumorigênese hipofisária permanece a ser investigado. / Pituitary tumors account for approximately 10%-15% of the intracranial neoplasms. Although the pathogenesis is not fully characterized, many molecular mechanisms involved in pituitary tumorigenesis have been unraveled. Using the methodology of cDNA microarray containing approximately 20000 genes, our group recently compared the expression of two distinct conditions: a pool of four clinically nonfunctioning pituitary adenomas and a spinal cord metastasis of a nonfunctioning pituitary carcinoma. Several genes were shown to be differentially expressed, among them, CRABP1 (cellular retinoic acid binding protein 1), CRABP2 (cellular retinoic acid binding protein 2), GRP (gastrin-releasing peptide) and RERG (RAS-like, estrogen-regulated, growth inhibitor). This study aimed to evaluate the expression of these four genes in a series of 59 pituitary adenomas (30 nonfunctioning, 13 GH-secreting, 8 ACTH-secreting and 8 PRL-secreting adenomas), comparing each tumor group with a set of normal pituitary tissues. While PRL-secreting adenomas showed lower expression of CRABP1 and CRABP2 mRNA when compared with normal tissues, GH-secreting adenomas had only lower expression of CRABP2 mRNA. Clinically nonfunctioning adenomas showed lower expression of GRP mRNA and higher expression of RERG mRNA when compared with the normal pituitary glands. Therefore, it was observed that not only the CRABP1 gene but also the CRABP2, GRP and RERG genes showed differences in transcript expression between the groups of pituitary adenomas. However, their role in pituitary tumorigenesis remains to be investigated.