• Refine Query
  • Source
  • Publication year
  • to
  • Language
  • 104
  • 93
  • 71
  • 12
  • 8
  • 4
  • 3
  • 2
  • 1
  • Tagged with
  • 310
  • 66
  • 55
  • 48
  • 39
  • 38
  • 31
  • 27
  • 27
  • 27
  • 24
  • 24
  • 22
  • 21
  • 19
  • About
  • The Global ETD Search service is a free service for researchers to find electronic theses and dissertations. This service is provided by the Networked Digital Library of Theses and Dissertations.
    Our metadata is collected from universities around the world. If you manage a university/consortium/country archive and want to be added, details can be found on the NDLTD website.
91

Orientation in Polyethylene-Nanoclay Composites

Champhekar, Mangesh C. January 2008 (has links)
No description available.
92

Integrated Techniques for the Study of Ribonucleoprotein Complexes

Caporoso, Joel A., Caporoso January 2016 (has links)
No description available.
93

Predicting the location of weld line in microinjection-molded polyethylene via molecular orientation distribution

Liao, T., Zhao, X., Yang, X., Whiteside, Benjamin R., Coates, Philip D., Jiang, Z., Men, Y. 31 January 2020 (has links)
Yes / The microstructure and molecular orientation distribution over both the length and the thickness of microinjection‐molded linear low‐density polyethylene with a weld line were characterized as a function of processing parameters using small‐angle X‐ray scattering and wide‐angle X‐ray diffraction techniques. The weld line was introduced via recombination of two separated melt streams with an angle of 180° to each other in injection molding. The lamellar structure was found to be related to the mold temperature strongly but the injection velocity and the melt temperature slightly. Furthermore, the distributions of molecular orientation at different molding conditions and different positions in the cross section of molded samples were derived from Hermans equation. The degree of orientation of polymeric chains and the thickness of oriented layers decrease considerably with an increase of both mold temperature and melt temperature, which could be explained by the stress relaxation of sheared chains and the reduced melt viscosity, respectively. The level of molecular orientation was found to be lowest in the weld line when varying injection velocity, mold temperature, and melt temperature, thus providing an effective means to identify the position of weld line induced by flow obstacles during injection‐molding process. / Jilin Scientific and Technological Development Program. Grant Number: 20180519001JH; National Key R&D Program of China. Grant Number: 2018YFB0704200; National Natural Science Foundation of China. Grant Numbers: 21674119, 21790342; Newton Advanced Fellowship of Royal Society. Grant Number: NA150222
94

Mold temperature- and molar mass-dependent structural formation in micro-injection molding of isotactic polypropylene

Zhao, X., Liao, T., Yang, X., Coates, Philip D., Whiteside, Benjamin R., Barker, D., Thompson, Glen P., Jiang, Z., Men, Y. 27 June 2022 (has links)
Yes / The structural formation and development of isotactic polypropylene (iPP) upon the micro-injection molding process was investigated at different mold temperatures and molecular weights utilizing a real-time synchrotron radiation small angle X-ray scattering (SAXS) technique combined with a customized micro-injection molding apparatus. Shish-kebab structure and parent-daughter lamellae were found to be formed during micro-injection molding for all iPP samples. In the case of kebab lamellae, a considerable growth in the long period and in the average thickness of lamellar crystallites and amorphous domains is observed at initial stages of crystallization for samples molded at varying temperatures. This effect is caused by the successive formation of thin lamellae in the outer layer and thick lamellae in the inner layer during the manufacturing process as evidenced by the spatial distribution of the crystalline lamellae across the thickness. In addition, the length of the shish formation increases remarkably at the onset of crystallization, the extent of which is dependent on the mold temperature. Despite the large changes of the lamellar stacks and the shish misorientation, the final length of the shish remains essentially unchanged when varying mold temperature. Since there is a critical orientation molecular weight above which the chains are stretched and oriented to form stable shish, the iPP sample with a low molar mass exhibits an overall decrease in the scattering intensity of SAXS patterns compared to the high molecular weight polypropylene. / This work is financially sponsored by the National Key R&D Program of China (2018YFB0704200), National Natural Science Foundation of China (21674119, 21790342 and 51525305), and Royal Society Newton Advanced Fellowship, United Kingdom (NA150222).
95

Phase behavior and ordering kinetics of block copolymers in solution during solvent removal

Heinzer, Michael J. 03 October 2011 (has links)
This dissertation is part of an effort to understand and to facilitate the modeling of the ordering kinetics of block copolymers in solution during the extraction of solvent from a solution-cast film. Central to this work was determining a suitable method for measuring the ordering kinetics during solvent removal and being able to interpret the measurements in terms of structure development. It was also necessary to assess a model for quantifying the ordering kinetics to use in conjunction with a mass transfer model to predict structure formation during solvent extraction. Changes in the dynamic mechanical response (DMR) over time of block copolymer solutions at fixed concentrations following solvent removal were explored as a means to track the growth of ordered domains. It was found that DMR measurements performed following solvent extraction were sensitive to the nucleation and growth process of the phase separation process over a wide range of concentrations, beginning near the order-disorder transition concentration. Based on complimentary small angle X-ray measurements, it was determined that the changes in the DMR are caused by the development of individual microstructures, The SAXS experiments also indicated that the DMR is insensitive to late stages of the growth process. Ultimately, DMR measurements under-predicted the ordering times at several concentrations and did not detect ordering at concentrations above which SAXS data indicated ordering was still occurring. The ability to use the parallel and series rules of mixtures for determining ï ¦(t) in conjunction with the Avrami equation to quantitatively model the ordering kinetics was also determined. These models allowed the ordering kinetics during solvent removal to be qualitatively analyzed. However, using the two different rules of mixtures resulted in a wide range of possible ordering times for a given copolymer concentration, making these approximations unsuitable for modeling a real solvent extraction process. Further, the parameters of the model were insensitive to the type of microstructures developing. As a continuation of this work, a new apparatus to track block copolymer ordering in situ during solvent extraction was designed. Experiments using the apparatus allowed the ordering kinetics and domain dimensions as a function of concentration to be monitored in real-time under several solvent removal conditions. These experiments study the ordering kinetics is a manner more akin to real processing conditions and will allow future assessment of the ability of iso-concentration ordering kinetics to predict phase separation during film processing. / Ph. D.
96

Influence of Solvent Removal Rate and Polymer Concentration on Ordering Kinetics of Block Copolymers in Solution

Pape, Alicia Richelle 27 April 2017 (has links)
An examination of the ordering process of block copolymer microstructure with respect to concentration was performed. Specifically, the process of solution casting block copolymer films was studied using small-angle X-ray scattering (SAXS). A method for determining the volume fraction of ordered phase in solution as the system dried was developed and used to analyze the solution casting process in several different block copolymer films in the neutral solvent toluene; these polymers include poly(styrene-b-butadiene), poly(styrene-b-isoprene-b-styrene), poly(styrene-b-butadiene-b-styrene), and several poly(methyl methacrylate-b-butyl acrylate-b-methyl methacrylate) polymers with different block fractions. A method was also developed for studying different drying rates of these films at a constant temperature. Temperature quenches of poly(styrene-b-isoprene-b-styrene) were performed to evaluate the effect of concentration on ordering rate. In all cases studied, an ordering layer was observed where self-assembly was thermodynamically favorable. This layer steadily grew until it reached the bottom substrate, resulting in a two-step ordering process. In the case of the styrene/diene copolymers, a constant polymer concentration was observed in the ordering layer as it grew to encompass the entire film. Kinetic entrapment was observed in the case of the diblock copolymer, as the system with a medium drying rate with respect to the other two experienced faster kinetics than the other two systems. For the two triblock copolymers, it was found that similar kinetics were observed with respect to the ordering layer concentration, largely due to skinning on the surface allowing time for lower sections of the film to order more completely. In the acrylate copolymers studied, the kinetics were not able to be evaluated with respect to drying rate. This was due to domain compression that cause a disordering of ordered microstructure as solvent was removed. This disordering was attributed to interfacial disruption caused by the compression in the film. In addition, a significant decrease in domain spacing was observed to occur in the vertical direction as a result of compression in that direction and pinning of the film to the substrate in the horizontal direction. Finally, the Avrami kinetic model was fit to several concentration of styrene/isoprene triblock copolymers as they ordered after a temperature quench. A U-shaped curve was observed in the system, as a result of competition between chain mobility effects and thermodynamic effects that occur as polymer concentration increases away from the CODT. It was found that the Avrami exponent remained constant over all concentrations, and an empirical model was fit to find the various rate constants at each polymer concentration. / Ph. D.
97

Caractérisation multi-échelle de la structure et du transport de cristaux liquides ioniques : vers des électrolytes solides innovants pour batteries lithium / Innovative solid electrolytes for Li-ion battery : multiscale structure and transport properties in ionic liquid crystals

Bernard, Laurent 30 January 2019 (has links)
Le remplacement des électrolytes liquides conventionnels des batteries lithium-ion est un enjeu majeur pour améliorer leurs performances et leur sécurité. Dans ce contexte, ce travail de thèse est focalisé sur la synthèse d’une nouvelle classe d’électrolytes solides organiques : les cristaux liquides ioniques thermotropiques, ainsi que la caractérisation multi-échelle des nanostructures obtenues et du transport ionique. Tout d’abord, nous présentons les structures chimiques choisies pour créer des assemblages de molécules cristal liquide à conduction « single-ion ». Ensuite, nous détaillons l’étude structurale et fonctionnelle, qui a permis d’établir l’organisation supramoléculaire sous forme de phase colonnaire avec des canaux de conduction ionique nanométriques. Des conductivités pouvant atteindre 10-4 S.cm-1 à 70°C ont été obtenues. La dynamique des ions au sein de ces électrolytes a été étudiée à l’échelle moléculaire et nous avons mis en évidence un mécanisme de conduction par saut. La polymérisation des cristaux liquides ioniques pourrait permettre le développement d’électrolytes polymères de type single-ion pour les batteries. / One major issue towards large-scale application of lithium-based batteries concerns their safety which is directly related to the nature of the electrolyte. Solid electrolytes are at present considered as a promising approach to avoid the risks related to the commonly employed liquids. Herein we report the synthesis and the characterization of a promising class of electrolytes: Thermotropic Ionic Liquid Crystals (TILCs). We describe the design and the synthesis of new self-assembled single-ion materials in function of their chemical architecture. We performed a systematic structural and functional properties study, demonstrating the crystal-liquid properties as well as the supramolecular organization into columnar phases. One of the most promising TILC shows a conductivity of 10-4 S.cm-1 at 70°C. The ion dynamics was probed at molecular scale to establish the main features of hopping conduction mechanism. Further polymerization of the TILCs could be applied to develop high performance single-ion polymer electrolytes for Li-ion batteries.
98

Estudo da estabilidade térmica da hemoglobina extracelular gigante de Glossoscolex paulistus (HbGp): efeitos do estado de oxidação do ferro do grupo heme, pH e presença de surfactante / Thermal stability studies of giant extracellular hemoglobin Glossoscolex paulistus (HbGp): effect of oxidation state of the heme group iron, pH and the presence of surfactant

Carvalho, José Wilson Pires 12 September 2013 (has links)
A hemoglobina extracelular de Glossoscolex paulistus (HbGp) possui estrutura oligomérica composta por 144 cadeias globínicas e 36 cadeias linkers, que não possuem heme, formando uma bicamada hexagonal. Estudos mostraram que a HbGp possui uma alta estabilidade á variação de pH e presença de agentes desnaturantes, tais como, surfactantes e ureia, a 25°C. Com esses conhecimentos prévios, o presente estudo tem por objetivo avaliar a estabilidade térmica da HbGp 0,5-3,0 mg/mL, nas formas oxi-, meta- e cianometa-, em diferentes valores de pH. O efeito do SDS na estabilidade térmica da oxi-HbGp 0,5 e 3,0 mg/mL, em função do pH, será investigado também. Esses estudos foram realizados usando as técnicas de absorção óptica, dicroísmo circular (CD), espalhamento de luz dinâmico (DLS) e espalhamento de raios X a baixo ângulo (SAXS). Os resultados de absorção óptica e CD revelam que o processo de desnaturação da oxi- e cianometa-HbGp, no pH 7,0, envolve a formação das espécies oxidadas aquo-meta-HbGp e hemicromo. O processo de desnaturação é próximo ao modelo de dois estados, com uma temperatura crítica (Tc) de 58-59 °C. No pH ácido, a proteína agrega a partir de 58 °C. A cinética de agregação da oxi-HbGp, no pH 7,0, é dependente da concentração de proteína e da temperatura. Os dados de DLS mostram que a meta- e cianometa-HbGp 0,5 mg/mL, pH 7,0, desnaturam a 48 ± 1 e 56 ± 1 °C, respectivamente. Em pH alcalino, a proteína dissocia parcialmente antes de desnaturar, e o aumento da concentração de proteína faz aumentar o valor de Tc para a cianometa-HbGp. Dados de SAXS mostram que a oxi- e meta-HbGp, pH 7,0, desnaturam a 60 °C, apresentando valores de Rg=143±1 Å e Dmax=450±1 Å, enquanto que a cianometa-HbGp se mantém estável, com valores de Rg=107±1 Å e Dmax=300±1 Å. As análises das curvas p(r) mostram uma porcentagem crescente de dodecâmero e tetrâmero em solução, em relação à fração de protreína íntegra e de subunidades maiores, com o aumento do pH e da temperatura. As análises baseadas no programa OLIGOMER são similares às baseadas na função p(r). A presença do SDS induz a dissociação da oxi-HbGp 0,5 mg/mL pH 7,0. Entretanto, com 3,0 mg/mL de proteína a dissociação é parcial, com a sobreposição dos processos de dissociação, desnaturação e agregação, com o aumento da temperatura. No pH 5,0, o SDS promove a agregação da oxi-HbGp em temperaturas menores. As constantes cinéticas de dissociação da oxi-HbGp 0,5 mg/mL, pH 7,0 aumentam de (0,53±0,07)x10-4 s-1 para (2,1±0,2)x10-4 s-1 na presença de 0,4 e 0,6 mmol/L de SDS a 40 °C, respectivamente. Na temperatura de 42 °C a constante aumenta 2,6 vezes, com 0,6 mmol/L de SDS, comparada a 40 °C. A oxi-HbGp 3,0 mg/ml na presença de 0,6 mmol/L de SDS, dissocia parcialmente em tempos menores com o aumento da temperatura antes de agregar. Portanto, esses estudos mostram que a estabilidade térmica da HbGp é sensível ao aumento de pH e presença de SDS. A ordem de estabilidade térmica em pH alcalino é dado por: cianometa->oxi->meta-HbGp. Alem disso, o processo de desnaturação é governado pelo valor do pH e dependente da concentração de proteína em solução. / The extracellular hemoglobin Glossoscolex paulistus of (HbGp) has an oligomeric structure composed by 144 globin chains and 36 non globin chains (named linkers), forming a hexagonal bilayer. HbGp presents a high stability reagarding pH variation and the presence of denaturing agents, such as, for example, urea and surfactant, at 25°C. In this way, the present studies aim to evaluate the thermal stability for oxy-, meta- and cyanomet-HbGp 0.5-3.0 mg/ml, at different pH values. The SDS effect on the thermal stability of oxy-HbGp 0.5 and 3.0 mg / mL is also investigated. Optical absorption, circular dichroism (CD), dynamic light scattering (DLS) and small angle X-ray scattering (SAXS) techniques were emplayed for these studies. The results based on the optical absorption and CD spectroscopies show that the denaturation process for oxy- and cyanomet-HbGp, at pH 7.0, involves the formation of oxidized species, such as aquo-met-HbGp and hemichrome. This denaturation process is very close to a two-state model, with a critical temperature (Tc) of 58-59 °C. However, in the acidic pH, the aggregation of protein occurs at 58 °C. The aggregation process kinetics for oxy-HbGp, pH 7.0, is dependent on the protein concentration and temperature. DLS data show that meta- and cyanomet-HbGp, 0.5 mg/mL, pH 7.0, undergo denaturation at 48 ± 1 and 56 ± 1 ° C, respectively. At alkaline pH, two HbGp forms undergo partial dissociation before denaturation, and at higher protein concentration, an increase of Tc values for cyanomet-HbGp is observed. SAXS results show that the denaturation of oxy-and met-HbGp occur at 60 °C, presenting Rg=143±1 Å and Dmax=450±15 Å, while cyanomet-HbGp remains stable with Rg =107±1 Å and Dmax= 300±10Å, at this temperature. The p(r) curves analysis show the increase of dodecamer and tetramer percentages in solution, with increase of pH and temperature. The results using the OLIGOMER program are similar to the p(r) data analysis. For oxy-HbGp 0.5 mg/mL pH 7.0, in the presence of SDS, oligomeric dissociation before denaturation is observed. However, with 3.0 mg/ml of protein the dissociation process is slower, showing an overlap of the dissociation, denaturation and aggregation processes in the system, with increase of temperature. At pH 5.0, SDS promotes the aggregation of oxy-HbGp at lower temperatures, as compared to the absence of surfactant. The kinetic dissociation constant values for oxy-HbGp 0.5 mg/mL increase from (0.53 ± 0.07) x10-4 s-1 to (2.1 ± 0.2) x10-4 s-1, in the presence of 0.4 and 0.6 mmol/L SDS at 40 ° C, respectively. At 42 °C the dissociation constant value increases 2.6-fold, with 0.6 mmol/L SDS, as compared to 40 °C. For oxy-HbGp 3.0 mg/ml, in the presence of 0.6 mmol/L SDS, the oligomeric dissociation is smallest occurring in shorter times with increasing temperature before aggregation. Therefore, these studies show that the thermal stability of HbGp is sensitive to the pH variation and the presence of SDS. At alkaline pH, the order of thermal stability is the following: cyanomet->oxy->met-HbGp. Furthermore, the denaturation process is governed by the pH value, being dependent on the protein concentration in solution.
99

Interação de porfirinas hidrofílicas e de hemoglobina extracelular com modelos biomiméticos de membrana biológica / Interaction of hidrophilic porphyrins and extracellular hemoglobin with biomimetic models of biological membranes

Santiago, Patricia Soares 04 April 2008 (has links)
Na primeira parte deste trabalho foi estudada a interação da porfirina catiônica meso-tetrakis N-metil-4-piridil (TMPyP) e a porfirina aniônica meso-tetrakis 4-fenilsulfonato (TPPS4) nas formas de base livre com sistemas modelos de membrana biológica (micelas iônicas, micelas mistas e vesículas de fosfolipídios) em soluções aquosas, através das técnicas de absorção ótica, espalhamento de luz ressonante (RLS do inglês \"resonante light scattering), fluorescência e SAXS, do inglês \"Small Angle X-Ray Scattering\". As curvas de SAXS das micelas catiônicas de CTAC (cloreto de cetiltrimetilamônio) foram ajustadas como um elipsóide prolato na ausência e na presença de 2-10 mM de TPPS4. Os dados de SAXS mostraram que a presença da porfirina TPPS4 modifica o centro hidrofóbico micelar, levando a formação de micelas menores. Através das análises dos dados de SAXS das micelas de SDS (dodecilsulfato de sódio) observamos que a forma da micela na ausência e na presença de 2-10 mM TMPyP apresenta a forma de um elipsóide prolato sem mudanças. Entretanto, o coeficiente de ionização, diminuiu com o aumento da concentração de porfirina, sugerindo a \"blindagem\" da carga aniônica do SDS pela porfirina catiônica. A supressão de fluorescência da TPPS4 e TMPyP foi estudada na ausência e na presença de diferentes micelas de surfactantes, tais como as de SDS, CTAC, HPS (N-hexadecil-N,N,dimetil-3-amônio-1-propano sulfato) e TX-100 (t-octil-fenoxi-polietoxi-etanol). O iodeto de potássio (KI) foi utilizado como supressor. Os gráficos de Stern-Volmer dos dados de fluorescência no estado estacionário foram ajustados pela equação quadrática, incluindo a supressão dinâmica (KD) e estática (KS). Os valores de KS são muito menores do que os valores de KD. Os resultados da TMPyP são consistentes com as constantes de ligação reportadas na literatura: uma redução significativa de supressão acontece para a TMPyP na presença de SDS, e uma redução moderada é observada para o sistema TMPyP-HPS e quase nenhuma mudança é vista para a TMPyP na presença de TX-100. Para o sistema CTAC-TPPS4 um aumento na supressão foi observado quando comparada com a TPPS4 em tampão puro. Isto provavelmente é associado ao acúmulo de iodeto na interface da micela catiônica. A atração entre a cabeça polar do CTAC e I-, e a repulsão entre SDS e I-, aumenta e reduz a supressão de fluorescência, respectivamente, das porfirinas que se localizam na interface micelar. A pequena supressão da TPPS4 em TX-100 é coerente com a forte ligação entre a TPPS4-TX-100 reportada na literatura. A TPPS4 e a TMPyP na presença de concentrações baixas dos surfactantes CTAC e SDS, respectivamente, apresentaram formação de agregados pré-micelares. A adição de surfactante neutro, TX-100, reduziu o efeito de agregação, acompanhada pelas várias técnicas espectroscópicas utilizadas neste trabalho. Portanto, sob condições onde temos a máxima formação de agregados (porfirina-surfactante), a titulação da TPPS4 com micelas de 40%CTAC-60%TX-100 e a TMPyP com micelas de 80%SDS-20%TX-100 não foi suficiente para eliminar a agregação, apesar da diminuição significativa do efeito de supressão de fluorescência e da intensidade de luz espalhada. A interação da TMPyP com 1-Palmitoil-2-Oleoil-sn-Glicero-3-fosfocolina (POPC), 1-Palmitoil-2-Oleoil-sn-Glicero-3-[Fosfo-rac-(1-glicero)] (POPG) e a mistura POPC + POPG é predominantemente devido à contribuição de eletrostática. O aumento da carga negativa, devido à adição de POPG, favorece a interação das vesículas com a porfirina catiônica. Na segunda parte deste trabalho foram estudados os efeitos de três surfactantes na estrutura oligomérica da hemoglobina extracelular gigante de Glossoscolex paulistus (HbGp) na sua forma oxi. O estudo com o SDS, CTAC e HPS permitiu diferenciar os efeitos de cargas opostas da cabeça polar dos surfactantes na dissociação da estrutura oligomérica e na autoxidação da hemoglobina. A interação do HPS com HbGp foi claramente menos intensa que a interação desta hemoglobina com os surfactantes catiônico (CTAC) e aniônico (SDS). Provavelmente, esta menor interação da HbGp com HPS, quando comparada com o SDS e o CTAC, é devido a menor atração eletrostática entre o HPS e os sítios iônicos da proteina. Dados espectroscópicos foram discutidos e comparados com os da literatura, afim de compreender a interação hemoglobina-surfactante, e como o ponto isoelétrico ácido (pI) pode influenciar na relação da estrutura-atividade das hemoglobinas gigantes extracelulares. As amostras de HbGp foram estudadas por espalhamento de luz dinâmico (DLS do inglês \"Dynamic light scattering\"). Na faixa de pH 6.0 a 8.0, HbGp é bastante estável e a distribuição de tamanho das partículas é monodispersa com um diâmetro hidrodinâmico médio (Dh) de 27 nm. O aumento dos valores de pH (pH>9.0) induziu um processo de dissociação irreversível, resultando num valor do Dh menor (10 nm). A diminuição do Dh sugere uma dissociação completa da hemoglobina. Em pH>9,0 a cinética de dissociação é lenta, com um mínimo 24 h para ser completada. As constantes cinéticas de dissociação aumentam progressivamente, com o aumento do valor do pH. As curvas de melting point para HbGp apresentaram dissociação oligomérica e desnaturação da proteina em função do pH. Os processos de autoxidação e dissociação estão intimamente relacionados, de modo que a dissociação da proteina oligomérica promove um aumento na velocidade de autoxidação e vice-versa. / In the first part of this work interactions of the cationic meso tetrakis (4-N-methilpyridil) porphyrin (TMPyP) and meso-tetrakis (4-sulfonatophenyl) porphyrin (TPPS4) in the free base forms with membrane model systems (ionic micelles, mixed micelles and phospholipids vesicles) in aqueous solutions, have been investigated by optical absorption, resonance light scattering (RLS), fluorescence and SAXS (Small Angle X-Ray Scattering). The best-fit SAXS curves were obtained assuming for cetyltrimethylammonium chloride (CTAC) micelle a prolate ellipsoidal shape in the absence and upon incorporation of 2-10 mM TPPS4. SAXS results show that the presence of TPPS4 impacts on micellar hydrophobic core, leading to a micellar reassembling into smaller micelles. SAXS data analysis demonstrated a prolate ellipsoidal shape for sodium dodecyl sulfate (SDS) micelles; no significant changes in shape and size were observed for SDS-TMPyP co-micelles. Moreover, the ionization coefficient, α, decreases with the increase of the porphyrin concentration, suggesting the \"screening\" of the anionic charge of SDS by the cationic porphyrin. These results are consistent with optical absorption, fluorescence and RLS spectroscopies data, allowing to conclude that neutral surfactants present a smaller interaction with the cationic porphyrin as compared with ionic surfactants. Fluorescence quenching of TPPS4 and TMPyP is studied in aqueous solution and upon addition of micelles of SDS, CTAC, N-hexadecyl-N,N-dimethyl-3-ammonio-1- propanesulfonate (HPS) and t-octylphenoxypolyethoxyethanol (Triton X-100). Potassium iodide (KI) was used as quencher. Steady-state Stern-Volmer plots were best fitted by a quadratic equation, including dynamic (KD) and static (KS) quenching. KS was significantly smaller than KD. For TMPyP quenching results are consistent with reported binding constants: a significant reduction of quenching takes place for SDS, a moderate reduction is observed for HPS and almost no change is seen for Triton X-100. For CTAC-TPPS4 system an enhancement of quenching was observed as compared to pure buffer. This is probably associated to accumulation of iodide at the cationic micellar interface. The attraction between CTAC headgroups and I-, and repulsion between SDS and I-, enhances and reduces the fluorescence quenching, respectively, of porphyrins located at the micellar interface. The small quenching of TPPS4 in Triton X-100 is consistent with strong binding as reported in the literature. Anionic TPPS4 and cationic TMPyP in the presence of low concentrations of the surfactants CTAC and SDS, respectively, showed formation of aggregates, monitored by optical absorption, fluorescence and resonance light scattering intensity (RLS). The addition of nonionic surfactant, Triton X-100, reduced the effect of aggregation monitored by the various techniques used in the present work. Therefore, under conditions for the maximum of aggregate formation (porphyrin-surfactant), apparently, the CTAC: TX-100 ratio equal to 40:60 and SDS:TX-100 ratio equal to 80:20 are not sufficient to eliminate aggregation, despite the significant decrease of the quenching effect of fluorescence and of the light scattering intensity. The interaction of TMPyP with 1-Palmitoyl-2-Oleoyl-sn- Glycero-3-Phosphocholine (POPC), 1-Palmitoyl-2-Oleoyl-sn-Glycero-3-[Phospho-rac-(1- glycerol)] (POPG) and the mixture POPC+POPG is predominantly due to the electrostatic contribution. The increase of the negative charge, due to addition of POPG, favors the interaction of vesicles with the cationic porphyrin. On the second part of this work the effects of three surfactants upon the oligomeric structure of the giant extracellular hemoglobin of Glossoscolex paulistus (HbGp) in the oxy - form was studied. The use of SDS, CTAC and HPS has allowed to differentiate the effects of opposite headgroup charges on the oligomeric structure dissociation and hemoglobin autoxidation. Furthermore, the interaction of HPS with HbGp was clearly less intense than the interaction of this hemoglobin with cationic (CTAC) and anionic (SDS) surfactants. Probably, this lower interaction with HPS is due to the lower electrostatic attraction between the HPS surfactant and the protein surface ionic sites when compared to the electrostatic interaction between HbGp and cationic and anionic surfactants. Spectroscopic data are discussed and compared with the literature in order to improve the understanding of hemoglobin-surfactant interaction as well as the acid isoelectric point (pI) influence of the giant extracellular hemoglobins on its structure-activity relationship. HbGp samples were studied by dynamic light scattering (DLS). In the pH from range 6.0 to 8.0, HbGp is stable and a monodisperse size distribution with a z-average hydrodynamic diameter (Dh) of 27±1 nm is observed. More alkaline pH (pH>9.0) induced an irreversible dissociation process, resulting in smaller Dh of 10±1 nm. Dh decrease suggests a complete hemoglobin dissociation. At pH 9.0 the dissociation kinetics is slow, taking a minimum of 24 h to be completed. Dissociation rate constants progressively increase at higher pH. Melting curves for HbGp showed oligomeric dissociation and protein denaturation as a function of pH. Autoxidation and dissociation processes are intimately related, so that oligomeric protein dissociation promotes the increase of autoxidation rate and vice-versa.
100

Caractérisation enzymatique et structurale d'une nouvelle famille d'aldéhyde déshydrogénase impliquée dans la dégradation de composés aromatiques toxiques / Enzymatic and structural study of a new family of aldehyde dehydrogenase involved in the catabolism of the aromatic toxic compounds

Fischer, Baptiste 14 December 2012 (has links)
Deux familles d'aldéhyde déshydrogénases (ALDH) phylogénétiquement et structuralement distinctes catalysent l'oxydation des aldéhydes : les ALDH phosphorylantes et les ALDH non phosphorylantes. Ces enzymes jouent un rôle essentiel au niveau cellulaire en intervenant au niveau du métabolisme et dans des processus de détoxication. En 2003, la résolution de la structure tridimensionnelle de l'enzyme bifonctionnelle 4-hydroxy-2-cétovalérate aldolase/acétaldéhyde déshydrogénase (DmpFG) de Pseudomonas sp. CF600 a permis l'identification d'une nouvelle famille d'ALDH : la sous-unité DmpF étant structuralement apparentée aux ALDH phosphorylantes alors qu'elle présente une activité de type non phosphorylante CoA-dépendante. Par la caractérisation enzymatique et structurale des orthologues MhpEF issus d'Escherichia coli et de Thermomonospora curvata, nos travaux montrent que les paramètres cinétiques de MhpF ne dépendent pas de son état oligomérique, ce qui est cas unique pour les ALDH. De plus, la résolution des structures cristallographiques de l'enzyme complexée avec du NAD+ ou du CoA, couplée à la structure en solution de la forme apoenzyme obtenue par SAXS montrent que le Rossmann fold s'accomode de la présence des cofacteurs par un vaste changement conformationnel. Enfin, l'étude du mécanisme catalytique et la résolution de la structure thioacylenzyme permettent d'identifierla MhpF comme étant un hybride des deux familles d'ALDH caractérisées jusqu'à présent / Two phylogenetically and structurally unrelated families of NAD(P)-dependent aldehyde dehydrogenases (ALDH) catalyze the oxidation of aldehydes into activated or non-activated acids. These enzymes are known to be involved in many biological functions such as cellular differentiation, central metabolism, or detoxification pathways. The crystal structure of the bifunctional enzyme, 4-hydroxy-2-ketovalerate aldolase (DmpG)/acetaldehyde dehydrogenase (DpmF) from Pseudomonas sp. CF600, leads to the identification of a new ALDH family. The DmpF subunit exhibits a non-phosphorylating CoA-dependent aldehyde dehydrogenase activity while its structure belongs to the phosphorylating ALDH superfamily. The kinetics of the MhpEF orthologs from Escherichia coli and Thermomonospora curvata show that the kinetic parameters of MhpF do not depend of its oligomeric state, which is unique for an ALDH. In addition, the crystal structures of the enzyme with NAD+ or CoA, as well as the solution structure of the apoenzyme using SAXS, reveal the dynamics of the overall Rossmann fold between apo or cofactors-bound conformers, which is necessary to carry on the catalytic cycle. Finally, the catalytic mechanism and the structure of the thioacylenzyme intermediates indicate that MhpF is a hybrid between both ALDH families characterized to date

Page generated in 0.0302 seconds