Exploring new technologies that can meet the world’s energy demands in an efficient and clean manner is critically important due to the depletion of natural resources and environmental concerns. Dye-sensitized solar cells (DSSCs) are low-cost and clean technology options that use solar energy efficiently and are being intensively studied. How to further reduce the cost of this technology while enhancing device performance is one of the demanding issues for large scale application and commercialization of DSSCs. In this research dissertation, four main contributions are made in this regard with the motivation to reduce further cost of DSSC technology. Firstly, ~10% efficiencies were achieved after developing understanding of key concepts and procedures involved in DSSCs fabrication. These efficiencies were achieved after step-by-step modifications in the DSSC design. Secondly, carbon nanotubes (CNTs) were successfully employed as an alternative to Pt in the counter electrodes of DSSCs. DSSCs fabricated with CNTs were ~86% as efficient as Pt-based cells. Non-aligned CNTs were successfully grown using four different CVD methods and finally, multi-walled vertically aligned CNTs (MW-VACNTs) were synthesized using water-assisted chemical vapor deposition (WA-CVD). Thirdly, carbon derived from pyrolysis of nanocrystalline cellulose (NCC) was successfully employed in counter electrodes of DSSCs instead of Pt. DSSCs with NCC were ~58% as efficient as Pt-based DSSCs. Fourthly, novel organic metal-free dyes were designed and employed instead of commonly used Ru-based dyes. DSSCs with these novel sensitizers were ~62% as efficient as those using the conventional Ru-based dyes. Characterization techniques including current-voltage measurements, scanning electron microscopy (SEM), electrochemical impedance spectroscopy (EIS), cyclic voltammetery (CV), thermogravimetric analysis (TGA), small angle x-ray scattering (SAXS), atomic force microscopy (AFM) and x-ray photoelectron spectroscopy (XPS) were used.

<p>Oligo(phenyleneethynylene) (OPE) molecules are a class of fully conjugated aromatic molecules, that attract attention for their application as “molecular wires” in molecular electronic devices. In this thesis work, self-assembled monolayers (SAMs) formed from a variety of OPE derivatives have been studied. The chemical properties, structure, and packing density of the SAMs have been characterized utilizing techniques such as high-resolution X-ray photoemission spectroscopy (HRXPS), near-edge X-ray absorption fine structure spectroscopy (NEXAFS), Infrared reflection absorption spectroscopy (IRRAS), contact angle measurements, and atomic force microscopy (AFM).</p><p>In a first study, three OPE-derivatives, with benzene, naphthalene and anthracene, respectively, inserted into the backbone, and an acetyl-protected thiophenol binding group were found to form SAMs on Au(111) substrates with lower molecular surface densities and larger molecular inclination as the lateral π-system increases.</p><p>In a second study, porphyrin was introduced as the end group to a wire-like molecule such as OPE. The purpose was to obtain well-organized and functionalized surfaces with optical and redox properties. Three porphyrin-functionalized OPEs had different binding groups, an acetyl-protected thiophenol, a benzylic thiol, and a trimethylsilylethynylene group, and were found to form SAMs on gold surfaces with difference in structure and degree of order. The molecules with the acetyl-protected thiophenol binding group were found to form a high quality SAM compared to the other two. This SAM exhibits a well-ordered and densely packed layer.</p><p>This study gives rise to a better understanding of SAM formation of OPE derivatives, and will form a base for further investigations of charge transport properties of these molecular films, which is of interest for applications in molecular electronic devices.</p>

Les propriétés d'une nouvelle classe de chimie de surface basée sur les monocouches auto-assemblées de liquides ioniques (ILs-SAMs), ont été étudiées pour une utilisation dans la construction de biocapteurs basés sur la résonance des plasmons de surface (SPR). Les biocapteurs sont utiles pour détecter des biomolécules spécifiques dans une matrice biologique complexe. Cependant, le signal analytique de la biomolécule spécifique peut être masqué par l’adsorption non spécifique de la matrice biologique, produisant une réponse faussement positive. Par ailleurs, l'activité des récepteurs moléculaires est souvent réduite par des techniques d'immobilisation chimique. Ainsi, il est essentiel de déterminer une surface idéale pour la préparation de biocapteurs. Les liquides ioniques sont bien connus pour favoriser l'activité des récepteurs moléculaires et cette étude enquête si cette propriété importante peut se traduire sur des capteurs SPR. Différents liquides ioniques ont été utilisés pour former des monocouches auto-assemblées sur une surface d'or. Les ILs-SAMs sont tous basés sur les sels de mercapto-(chaîne alkyle)nCH2-méthylimidazolium avec différentes chaînes alkyles (n = 3, 6, 9, 12) et différents contre-anions (Br-, BF4-, PF6-, NTf2-). Des études cinétiques de l'adsorption non spécifique de sérum bovin ont été réalisées sur des capteurs SPR avec un instrument construit sur mesure, basé sur l'interrogation des longueurs d’ondes SPR sur un prisme d’inversion d’image (dove). Par la suite, l’anti-IgG de chèvre sélective à l’IgG humain a été utilisé en tant que modèle pour la confection de biocapteurs sur les ILs-SAMs. En solution, il est possible d’effectuer des échanges du contre-anion des liquides ioniques pour un contre-anion de plus en plus hydrophobe. Cependant, l’échange inverse, soit vers des anions de plus en plus hydrophile, s’avère impossible. Toutefois, il a été observé par les travaux présentés dans ce mémoire, que les liquides ioniques immobilisés sur une surface d'or ont la capacité d'échanger leurs contre-anions réversiblement, procurant une méthode simple de moduler leurs propriétés physico-chimiques. Ce phénomène a été observé par la mesure d’angles de contacts et par les techniques spectroscopiques de l’infrarouge moyen (mid-IR), des photoélectrons de rayon-X (XPS) et par la diffusion Raman exaltée par les surfaces (SERS) ii ainsi que par la spectrométrie de masse (MS). La connaissance des propriétés d’échange d’anion est importante pour prédire le comportement de ces surfaces de liquides ioniques dans les tampons et fluides biologiques. / The properties of a novel class of surface chemistry based on ionic liquid self-assembled monolayers (IL-SAM) were investigated for use with surface plasmon resonance (SPR) biosensors. Biosensors are useful to detect specific biomolecules in a complex biological matrix. However, the analytical signal of a specific biomolecule can be masked by nonspecific adsorption of the biological matrix, resulting in a false positive response. Moreover, the activity of molecular receptors is often reduced by current immobilization chemistry. Thus, it is essential to determine an ideal surface for the preparation of biosensors. Ionic liquids are well-known to promote the activity of molecular receptors and this study investigates if this important property translates to SPR sensors. Different ionic liquids were used to form self-assembled monolayers on a gold surface. IL-SAM were based on mercapto(alkyl chain)n methylimidazolium salts with different alkyl chain (n = 3, 6, 9, 12) and counter anions (Br-, BF4-, PF6-, NTf2-). Kinetic studies of the nonspecific adsorption of bovine serum were carried on SPR sensors with a custom built instrument based on wavelength interrogation SPR on a dove prism. Thereafter, anti-goat IgG selective to human IgG was used as a model for biosensor employing ILs-SAM surface chemistry. Exchange of counter anion of ionic liquids was believed impossible for most hydrophobic counter anions. However, it was observed that ionic liquids immobilized on a gold surface have the ability to exchange their counter anions reversibly, allowing a simple method to modulate their physico-chemical properties. This phenomenon was observed by contact angle technique and by attenuated total reflectance mid-infrared (ATR mid-IR), X-ray photoelectron spectroscopy (XPS), surface enhanced raman spectroscopy (SERS) and mass spectrometry (MS). Better understanding of the anion exchange properties is crucial in predicting the behaviour of IL-SAM in presence of biological buffers and fluids.

Il existe une très forte demande en biocapteurs pour la détection d’agents pathogènes dans le domaine environnemental et médical. Dans ce contexte, le contrôle de l’état de surface des biocapteurs joue un rôle crucial. Les monocouches auto-assemblées (Self-Assembled Monolayers, SAMs) permettent de fonctionnaliser de manière homogène et reproductible ces surfaces. Ces SAMs sont généralement obtenues à partir d’agents de couplage siliciés à longue chaîne alkyle. Mais, ces composés sont souvent difficiles à synthétiser et à purifier en raison de leurs faibles solubilités dans les solvants organiques. C’est pour cela que nous avons proposé d’introduire une fonction polaire (amide ou urée) au sein de ces films. Ces fonctions permettent également un auto-assemblage des molécules sur le substrat au moyen de liaisons hydrogène entre les molécules. Les nouvelles monocouches fonctionnelles ont été caractérisées entre autres par spectroscopie infrarouge de réflexion-absorption par modulation de polarisation (PM-IRRAS) ce qui a permis d’identifier les différents groupes moléculaires. Ces monocouches ont aussi montré leurs capacités à immobiliser une molécule biologique (Protéine A). / There is an increasing demand for biosensors to detect pathogens in environmental and medical fields. In this context, the control of the surface properties plays an important role. Self-Assembled Monolayers (SAMs) allow to functionalize these surfaces homogeneously and reproducible. SAMs on silicon based surfaces are usually obtained from silylated coupling agents with long alkyl chain. However, these compounds are often difficult to purify owing to their low solubility in organic solvents. That’s why we proposed to introduce a polar function (amide or urea) in the molecular structure. These precursors were also capable of association by H-bonds and offer possibilities to control the organic assembly on the surfaces. The new functional monolayers were characterized by Polarization Modulation Infrared Reflection Adsorption Spectroscopy (PM-IRRAS) and others techniques such as XPS and contact angle in order to identify the different molecular groups on the surface. These functionalized monolayers have also shown their ability to immobilize biomolecules (Protein A).

L'oxydoréduction des monocouches auto-assemblées («Self-assembled monolayers ou SAMs) de ferrocenyldodecanethiolates sur une surface d'or (Fc(CH2)12SAu) dans des solutions aqueuses de n-alkyle sulfate de sodium (6, 8, 10 et 12 atomes de carbone) est étudiée par spectroscopie de résonance des plasmons de surface («Surface Plasmons Resonance ou SPR) couplée avec de la voltampérométrie cyclique (VC). La technique SPR est utilisée pour suivre en temps réel l'adsorption des tensioactifs en fonction du potentiel appliqué. Elle permet de quantifier l'épaisseur et le recouvrement des molécules adsorbées pour déterminer l'organisation des tensioactifs anioniques sur la SAM. La VC est utilisée afin de caractériser l'oxydation du groupement ferrocène en présence des n-alkyle sulfate de sodium qui s'associent à la SAM grâce à l'appariement entre le ferrocénium et le groupement sulfate. Des mélanges binaires d'alkylesulfates de différentes compositions sont utilisés dans le but de déterminer l'organisation induite par une réaction d'oxydoréduction. L'effet de la longueur de la chaîne d'hydrocarbures sur la quantité de tensioactifs anioniques adsorbés ainsi que les affinités relatives d'appariement des anions alkyle sulfate aux ferrocéniums sont rapportés dans ce mémoire. Ces surfaces électrosensibles permettront la détection de molécules amphiphiles et la compréhension du comportement de mélanges binaires de tensioactifs. Ainsi, ces travaux apporteront une avancée sur la modulation électrochimique de l'organisation de matériaux sur des substrats solides basée sur l'appariement d'ions. / The redox-induced pairing from aqueous solution of a homologous series of sodium n-alkyl sulfate (6, 8, 10 and 12 carbon atoms) to self-assembled monolayers (SAMs) of ferrocenyldodecanethiolates on a gold surface (Fc(CH2)12SAu) is investigated by spectroscopy of surface plasmon resonance (SPR) coupled with the cyclic voltammetry (CV). The SPR technique is used to monitor in real time the adsorption of surfactant in function of the applied potential. It quantifies the adsorbed layer thickness and surface coverage to determine the organization of anionic surfactants on SAM. CV is used to characterize the oxidation of ferrocene group in the presence of sodium n-alkyl sulfates that associate with SAM through matching between the ferrocenium and sulfate group. Binary mixtures of alkylesulfates of different compositions are used to determine the structure induced by a redox reaction. The effect of the length of the hydrocarbon chain on the amount of anionic surfactants adsorbed and the relative affinities of matching the ferroceniums alkyl sulfate anions are reported in this thesis. These electrosensitive surfaces allow the detection of amphiphilic molecules and the understanding the behavior of binary mixtures of surfactants. Thus, this work will result in progress on the electrochemical modulation organizing materials on solid substrates based on the ion-pairing.

>Magister Scientiae - MSc / Glucose oxidase (GOx) and horseradish peroxidase (HRP) are important enzymes for the development of amperometric enzyme linked immunosensors. The selectivity of each enzyme towards its analyte deepens its importance in determining the sensitivity of the resultant immunosensor. In designing immunosensors that have customized transducer surfaces, the incorporation with FAD and iron based enzymes ensures that electron kinetics remains optimal for electrochemical measurement. Various different immobilization strategies are used to produce response signals directly proportional to the concentration of analyte with minimal interferences. The combination of self-assembled monolayers and supramolecular chemistry affords stability and simplicity in immunosensor design. In this work, two electrochemical strategies for the detection of human chorionic gonadotropin(hCG) is presented. This involves the modification of a gold surface with a thiolated β-cyclodextrin epichlorohydrin polymer (βCDPSH) to form a supramolecular inclusion complex with ferrocene (Fc)-functionalised carboxymethyl cellulose polymer (CMC). Cyclic voltammetry indicated that ferrocene is in close proximity to the electrode surface due to the supramolecular complex formed with βCDPSH. Furthermore, strategy (a) for the detection of hCG used α-antihCG labelled (HRP) as reporter conjugate. Strategy (b) maintained the CMC bifunctionalised with Fc and recognition antibody for hCG hormone. However, the system was functionalised with a HRP enzyme and detection is done by using GOx reporter conjugates for in situ production of hydrogen peroxide. The reduction of H2O2 was used for the amperometric detection of hCG by applying a potential of 200 mV. The sensitivity and limit of detection of both strategies were calculated from calibration plots. For strategy (a) the LOD was found to be 3.7283 ng/mL corresponding to 33.56 mIU/mL and a sensitivity of 0.0914 nA ng-1 mL-1. The corresponding values for strategy (b) are 700 pg/mL (6.3 mIU/mL) and 0.94 nA ng-1 mL-1.

Face à la quête constante de miniaturisation, les nanosciences ont connu un essor fulgurant lors de la dernière décennie. Au sein de ces dernières, les procédés lithographiques – clé de voûte de l’industrie des semi-conducteurs – permettent désormais d’accéder à des nanomatériaux fonctionnels. Malgré les récents développements technologiques, l’obtention de nanostructures possédant une résolution inférieure à 100 nm reste un défi majeur pour la communauté scientifique.Devant l’intérêt grandissant de développer des méthodes alternatives en nanolithographie, notre groupe s’est tourné vers une approche chimique, nommée nanolithographie par sonde locale catalytique (cSPL). Combinant la robustesse de la catalyse organométallique et la flexibilité offerte par la microscopie à sonde locale, notre stratégie permet la nanostructuration de surfaces organominérales par la création de liaisons covalentes dans des conditions douces. Cette approche innovante constitue le premier exemple d’immobilisation d’un catalyseur homogène à la surface d’une pointe d’un microscope à force atomique (AFM), dans l’optique de contrôler spatialement une réactivité chimique, l’époxydation localisée d’alcènes terminaux. Ces fonctions époxydes ont été employées comme points d’ancrage dans la nanostructuration à façon de surfaces de silicium avec une large variété de nucléophiles. De plus, l’optimisation des paramètres physico-chimique influant sur la réaction, a permis d’atteindre des résolutions latérales de l’ordre de 40 nm et laisse entrevoir de nombreuses perspectives dans la nanostructuration tridimensionnelle de matériaux organiques. / In regard to the constant quest for miniaturization, the field of nanosciences has known a tremendous expansion over the last decade. More precisely, lithographic technologies - key processes for the semi-conductor industry – allow to access to functional nanomaterials. Despite recent technological developments, the synthesis of nanostructures with a sub-100 nm resolution remains a major challenge for the scientific community.Due to the growing interest in the design of new nanolithographic methods, our group has focused its efforts on the development of a chemical approach, named catalytic scanning probe lithography (cSPL). Unifying the robustness of organometallic catalysis and the flexibility offered by scanning probe microscopy, our strategy allows the nanostructuration of organomineral surfaces in a soft controlled manner by the formation of covalent bonds. This innovative approach represents the first example of the immobilization of an homogeneous catalyst on the edge of an atomic force microscope (AFM) tip, in order to spatially control a chemical reaction: the localized epoxidation reaction of terminal alkenes. Those epoxides were then used as anchoring sites, in the nanostructuration of silicon wafers with a broad range of nucleophiles. Moreover, the different physico-chemical parameters influencing the reaction were optimized, allowing us to reach lateral resolutions down to 40 nm and opening new perspectives in the field of 3D-nanostructuration of organic materials.

Cette thèse traite de l'étude du transport de charge à travers les semi-conducteurs organiques au sein de transistors à effet de champ organiques (OFET). Une grande attention a été accordée aux interfaces dans les OFET dont les propriétés ont été accordées pour moduler la réponse transistor. La stabilité de l'appareil en état de commutation et le mécanisme régissant l'injection de charges ont été étudiés systématiquement. Le transport de charge au niveau fondamental à travers les monocouches auto-assemblées comprenant une grande variété des molécules π-conjuguées a été étudié. Dans cette thèse, le processus de transport de charge et différents paramètres affectant ce phénomène sont examinées en détail par la fabrication et la caractérisation de trois terminaux basés sur des architectures OFET et deux dispositifs de jonctions terminales constituées d’une couche mono-moléculaire sur la surface de l'électrode métallique. Parmi les différents aspects relatifs à l'injection de charge dans des transistors organiques macroscopiques à couches minces, un accent particulier a été mis sur l'interface de l’engineering en réglant (i) le diélectrique / l’interface semi-conducteur, et (ii) l'électrode en métal / le semi-conducteur. Pour explorer les aspects régissant le transport de charge dans le canal de l'appareil, nous avons étudié la propriété de (iii) la mobilité intrinsèque dans la semi-conductivité des matériaux et (iv) l'utilisation de mélanges dans la couche active du dispositif. A l’échelle nanométrique, le transport de charge, grâce à une mono-couche moléculaire chimisorbé sur des électrodes métalliques, a été étudié. Pour effectuer la caractérisation électrique sur la mono couche auto-assemblée (SAM), nous avons construit un système de configuration comprenant des alliages eutectiques de gallium et d'indium liquide métallique (GainE) comme électrode. / This thesis deals with the study of charge transport through organic semiconductors incorporated in Organic Field-Effect Transistors (OFETs). Great attention is given to the interfaces in the OFETs and the properties of which were tuned to modulate transistor response. The stability of the device under switching states and the mechanism governing charge injection were studied systematically. In a fundamental level the charge transport through self-assembled monolayers comprising of variety of π-conjugated molecules were investigated. In this thesis the charge transport process and different parameters affecting this phenomenon are investigated in detail by fabrication and characterization of three terminal devices based on OFET architectures and two terminal devices consisting junctions incorporating mono-molecular layer on surface of metal electrode. Among the different aspects governing the charge injection in macroscopic organic thin film transistors particular emphasis was given to the interface engineering by tuning the (i) Dielectric/semiconductor interface, and (ii) Metal electrode/semiconductor. To explore aspects governing charge transport within the channel of the device we investigated the property of (iii) semiconductor intrinsic mobility and (iv) usage of blends in the active layer of the transistor. On the nanoscale the charge transport through a mono molecular layer chemisorbed onto metal electrodes was investigated. To perform electrical characterization on self-assembled monolayer (SAM) a custom in-house setup comprising of eutectic alloy of liquid metallic gallium indium (GaInE) probe electrode was built.

Oligo(phenyleneethynylene) (OPE) molecules are a class of fully conjugated aromatic molecules, that attract attention for their application as “molecular wires” in molecular electronic devices. In this thesis work, self-assembled monolayers (SAMs) formed from a variety of OPE derivatives have been studied. The chemical properties, structure, and packing density of the SAMs have been characterized utilizing techniques such as high-resolution X-ray photoemission spectroscopy (HRXPS), near-edge X-ray absorption fine structure spectroscopy (NEXAFS), Infrared reflection absorption spectroscopy (IRRAS), contact angle measurements, and atomic force microscopy (AFM). In a first study, three OPE-derivatives, with benzene, naphthalene and anthracene, respectively, inserted into the backbone, and an acetyl-protected thiophenol binding group were found to form SAMs on Au(111) substrates with lower molecular surface densities and larger molecular inclination as the lateral π-system increases. In a second study, porphyrin was introduced as the end group to a wire-like molecule such as OPE. The purpose was to obtain well-organized and functionalized surfaces with optical and redox properties. Three porphyrin-functionalized OPEs had different binding groups, an acetyl-protected thiophenol, a benzylic thiol, and a trimethylsilylethynylene group, and were found to form SAMs on gold surfaces with difference in structure and degree of order. The molecules with the acetyl-protected thiophenol binding group were found to form a high quality SAM compared to the other two. This SAM exhibits a well-ordered and densely packed layer. This study gives rise to a better understanding of SAM formation of OPE derivatives, and will form a base for further investigations of charge transport properties of these molecular films, which is of interest for applications in molecular electronic devices.

This study embarks on exploiting the Thickness Shear Mode (TSM) acoustic wave sensor and the ElectroMagnetic Piezoelectric Acoustic Sensor (EMPAS) towards the study of aptamer-to-cocaine binding in a label-free direct approach. The high sensitivity and selectivity offered by the EMPAS in combination with alkyltrichlorosilane-based self-assembled monolayers proved superior towards the detection of cocaine. The most efficient method for the attachment of the aptamers onto the sensor surface to construct highly dense populations of the aptamer molecules with retained biomolecule activity is shown to be dependent on the composition of immobilizing solution and on the amount of spacing provided in the plane of the aptamer molecules. The distinct ligand-induced binding mechanisms and regeneration capabilities of the two anti-cocaine aptamers are monitored with the EMPAS. Utilizing this sensor to monitor cocaine-aptamer interactions will serve as the first piezoelectric aptasensor for the detection of a small molecule.