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  • About
  • The Global ETD Search service is a free service for researchers to find electronic theses and dissertations. This service is provided by the Networked Digital Library of Theses and Dissertations.
    Our metadata is collected from universities around the world. If you manage a university/consortium/country archive and want to be added, details can be found on the NDLTD website.
1

Mapeamento de epitopos das proteínas do vírus Zika na interação materno-infantil pelo método de Spot-synthesis. / Mapping of epitopes of Zika virus proteins in maternal-infant interaction by the Spot-synthesis method.

Soares, Anderson Pereira 15 October 2018 (has links)
O Vírus Zika é um arbovírus pertencente à família Flaviviridae e ao gênero Flavivirus, é constituído por RNA de cadeia simples senso positivo e foi primeiramente descrito em 1947 na floresta de Ziika, em Uganda. Este estudo, visa mapear os epitopos do Vírus Zika (ZIKV), experimento que nos permite avaliar e compreender a resposta imune do hospedeiro contra o vírus por meio da detecção de regiões imunodominantes nas proteínas virais. O processo de identificação dos epitopos de ZIKV foi realizado pela técnica de spot synthesis, que se baseia em arranjos de peptídeos relacionados às proteínas do ZIKV. Amostras de soro de pacientes residentes em áreas endêmicas de arboviroses, mães e bebês que apresentaram sintomatologia típica foram selecionadas e triadas pelo método de ELISA e PCR real time. Sequências de referência do vírus foram submetidas a análises in sílico, para a determinação das áreas de interação na superfície da proteína e suas características antigênicas, para efeito de comparação com a resposta observada pelas amostras. Os experimentos evidenciaram um alta antigenicidade nas proteínas estruturais do vírus, e em nas não-estruturais 1,3 e 5. / The Zika virus is an arbovirus belonging to the genus Flavivirus of the Flaviridae family. It consists of single-stranded positive-sense RNA and was first described in 1947 in the Ziika Forest in Uganda. This study aims to map the Zika virus (ZIKV) epitopes, in an experimental design that allows us to evaluate and understand the immune response of the host against the virus by detecting immunodominant regions in the viral proteins. The process of identification of the ZIKV epitopes was performed by the spot synthesis technique, which is based on peptide arrangements related to the ZIKV proteins. Serum samples from patients living in arboviruses endemic areas, mothers and infants presenting typical symptoms were selected and screened by ELISA and real time PCR. Reference sequences of the virus were submitted to in silico analyzes to determine the interaction areas on the surface of the protein and its antigenic characteristics, for comparison with the response observed by using serum samples. The experiments demonstrated a high antigenicity in the structural proteins of the virus, and in the non-structural proteins 1, 3 and 5.
2

DESIGN OF A SCREENING PROCESS FOR THE DEVELOPMENT

Jackson, Marcus J. January 2011 (has links)
We have initiated the development of a screening platform to design a library of small molecules on the same solid support surface. This solid support surface, and the chemistry involved, can be utilized as a means of developing lead target molecules, namely ligands and catalysts. Evidence shows the successful assembly of both simple amino acids, as well as successful employment of our synthetic compounds. We support our efforts by showing compatibility for binding studies with larger macromolecules. Thus, intrigue remains by the prospects of this project. Challenges within our efforts are highlighted and emphasis is placed on presenting solutions to current issues, in order to attain further development. Notwithstanding difficulty, the desire to establish efficient processes for the discovery of lead target molecules and to ascertain the utility of our synthesized compounds, can be captured within this body of work. Lastly, the framework for continued efforts has been set to enable future progression. / Chemistry
3

Caracterização do antígeno-5, alérgeno do veneno da vespa social Polybia paulista com uma abordagem proteômica /

Pinto, José Roberto Aparecido dos Santos. January 2011 (has links)
Resumo: Os venenos dos insetos da ordem Hymenoptera contêm uma variedade de proteínas alergênicas. As ferroadas desses insetos podem induzir reações alérgicas e ocasionalmente, anafilaxias fatais. Há um crescente interesse nos componentes químicos dos venenos desses insetos, sobretudo no campo da alergia e imunologia clínica. As principais reações desses venenos são as reações inflamatórias e/ou imunológicas em suas vítimas, podendo ocorrer alguns efeitos sistêmicos. Dentre os Hymenoptera sociais, os venenos de abelhas e vespas têm sido extensivamente estudados e muitos de seus componentes moleculares já foram isolados e identificados. Fosfolipase, hialuronidase, antígeno-5 e serinoprotease são proteínas antigênicas de elevada massa molecular que, quando injetadas durante o ato de ferroar, iniciam uma resposta imune peculiar, sensibilizando alguns indivíduos. Porém, poucos estudos têm sido realizados para a identificação e o mapeamento dos epítopos desses alérgenos. O conhecimento sobre a interação molecular dos principais alérgenos destes venenos certamente deverá contribuir para o aperfeiçoamento dos diagnósticos de alergia, bem como para o desenvolvimento de tratamentos mais seletivos de reações alérgicas mediadas por IgE. No presente estudo identificamos e mapeamos os epítopos lineares de células-B do antígeno-5 do veneno da vespa social Polybia paulista. O antígeno-5 é conhecido como um dos principais alérgenos do veneno de Hymenoptera com massa molecular em torno de 23 kDa e função biológica desconhecida, porém muitos estudos demonstram a sua alergenicidade. Tendo conhecimento da sequência primária do antígeno-5, a identificação e o mapeamento dos epítopos foram realizados através da síntese múltipla de peptídeos, utilizando as técnicas do SPOT-Synthesis, imunodetecção e método indireto do ELISA com soro de pacientes sensíveis... (resumo completo, clicar acesso eletrônico abaixo) / Abstract: The venom insects of Hymenoptera order contain a variety of allergenic proteins. The stings of these insects can induce allergic reactions and occasionally fatal anaphylaxis. There is a growing interest in the knowledge about the chemical components of the venom of these insects, especially in the field of allergy and clinical immunology. The main reactions of these venoms are inflammation and / or the induction of immune process in the victims; sometimes systemic effects also may be observed. Among the social Hymenoptera, the venoms of bees and wasps have been extensively studied and many of their molecular components have been isolated and identified. Phospholipase, hyaluronidase, antigen-5 and serine protease are antigenic proteins of high molecular weight, which may initiate a peculiar immune response to sensitize some individuals. However, few studies have been performed for the identification and mapping of the epitopes these allergens. The knowledge about the molecular interaction of the major allergens of these venoms with IgG and/or IgE will certainly contribute for improving the diagnosis of allergy, as well as to develop more selective treatments of reactions IgE-mediated allergy. In this study we identified and mapped the linear epitopes of B-cells of the antigen-5 from the venom of the social wasp Polybia paulista. The antigen-5 is known as one of the major allergens from Hymenoptera venoms with molecular weight around 23 kDa and unknown biological function, but many studies show its allergenicity. The aim of this study was to identify and to map the linear epitopes of B-cells of this allergen. Taking into account the knowledge the primary sequence of antigen-5, the identification and mapping of epitopes was performed by using multiple synthesis of peptides with the combination of different protocols: SPOT-Synthesis, immunoblotting and indirect method of ELISA with the sera... (Complete abstract click electronic access below) / Orientador: Mario Sergio Palma / Coorientador: Lucilene Delazari dos Santos / Banca: Salvatore Giovanni de Simone / Banca: Luisa Karla de Paula Arruda / Mestre
4

MAPPING AND ANTAGONIZING THE INTERACTION BETWEEN PHOSPHODIESTERASE 3B AND EXCHANGE PROTEIN ACTIVATED BY cAMP-1 ELUCIDATES THEIR ROLES IN ENDOTHELIAL CELL ADHESION

PRITCHARD, LISA 07 October 2009 (has links)
The ubiquitous second messenger cAMP acts to integrate and translate information encoded by extracellular messenger molecules, including hormones and neurotransmitters. Intracellular cAMP concentrations are regulated through coordinated changes in the activities of adenylyl cyclases (ACs) and cyclic nucleotide phosphodiesterases (PDEs). Freely diffusing cAMP can reach concentrations sufficient to activate cAMP effector proteins, such as protein kinase A (PKA) or the exchange protein activated by cAMP (EPAC), except in defined compartments where PDEs are localized which allows for spatial and temporal control of the cAMP signal. In human aortic vascular endothelial cells (HAECs) and HEK293T cells we recently identified a macromolecular complex consisting of PDE3B and EPAC and showed that this complex coordinated cAMP-induced effects on adhesion of these cells to fibronectin-coated surfaces. Using “pull-down” assays and peptide array-based approaches we have identified the molecular determinants which coordinate the formation of this complex. Our evidence suggests that the extreme N-terminal 13 amino acids of PDE3B represent the portion of PDE3B that interacts with EPAC. In addition, although several EPAC-encoded peptides were shown to bind PDE3B, immunoprecipitation-based studies identified a region proximal to the cAMP-binding domains as likely to have a dominant role in this binding. Of functional relevance, a cell permeable peptide containing these amino-terminal 13 amino acids of PDE3B antagonizes PDE3B-EPAC interactions in cells. In addition, this peptide impacted the ability of cAMP-elevating agents to coordinate EPAC-dependent cell adhesions. / Thesis (Master, Pathology & Molecular Medicine) -- Queen's University, 2009-10-06 19:07:12.01
5

Caracterização do antígeno-5, alérgeno do veneno da vespa social Polybia paulista com uma abordagem proteômica

Pinto, José Roberto Aparecido dos Santos [UNESP] 03 March 2011 (has links) (PDF)
Made available in DSpace on 2014-06-11T19:23:00Z (GMT). No. of bitstreams: 0 Previous issue date: 2011-03-03Bitstream added on 2014-06-13T20:29:34Z : No. of bitstreams: 1 pinto_jras_me_rcla.pdf: 1057969 bytes, checksum: 2e29026d533c6190983ed253a062779d (MD5) / Os venenos dos insetos da ordem Hymenoptera contêm uma variedade de proteínas alergênicas. As ferroadas desses insetos podem induzir reações alérgicas e ocasionalmente, anafilaxias fatais. Há um crescente interesse nos componentes químicos dos venenos desses insetos, sobretudo no campo da alergia e imunologia clínica. As principais reações desses venenos são as reações inflamatórias e/ou imunológicas em suas vítimas, podendo ocorrer alguns efeitos sistêmicos. Dentre os Hymenoptera sociais, os venenos de abelhas e vespas têm sido extensivamente estudados e muitos de seus componentes moleculares já foram isolados e identificados. Fosfolipase, hialuronidase, antígeno-5 e serinoprotease são proteínas antigênicas de elevada massa molecular que, quando injetadas durante o ato de ferroar, iniciam uma resposta imune peculiar, sensibilizando alguns indivíduos. Porém, poucos estudos têm sido realizados para a identificação e o mapeamento dos epítopos desses alérgenos. O conhecimento sobre a interação molecular dos principais alérgenos destes venenos certamente deverá contribuir para o aperfeiçoamento dos diagnósticos de alergia, bem como para o desenvolvimento de tratamentos mais seletivos de reações alérgicas mediadas por IgE. No presente estudo identificamos e mapeamos os epítopos lineares de células-B do antígeno-5 do veneno da vespa social Polybia paulista. O antígeno-5 é conhecido como um dos principais alérgenos do veneno de Hymenoptera com massa molecular em torno de 23 kDa e função biológica desconhecida, porém muitos estudos demonstram a sua alergenicidade. Tendo conhecimento da sequência primária do antígeno-5, a identificação e o mapeamento dos epítopos foram realizados através da síntese múltipla de peptídeos, utilizando as técnicas do SPOT-Synthesis, imunodetecção e método indireto do ELISA com soro de pacientes sensíveis... / The venom insects of Hymenoptera order contain a variety of allergenic proteins. The stings of these insects can induce allergic reactions and occasionally fatal anaphylaxis. There is a growing interest in the knowledge about the chemical components of the venom of these insects, especially in the field of allergy and clinical immunology. The main reactions of these venoms are inflammation and / or the induction of immune process in the victims; sometimes systemic effects also may be observed. Among the social Hymenoptera, the venoms of bees and wasps have been extensively studied and many of their molecular components have been isolated and identified. Phospholipase, hyaluronidase, antigen-5 and serine protease are antigenic proteins of high molecular weight, which may initiate a peculiar immune response to sensitize some individuals. However, few studies have been performed for the identification and mapping of the epitopes these allergens. The knowledge about the molecular interaction of the major allergens of these venoms with IgG and/or IgE will certainly contribute for improving the diagnosis of allergy, as well as to develop more selective treatments of reactions IgE-mediated allergy. In this study we identified and mapped the linear epitopes of B-cells of the antigen-5 from the venom of the social wasp Polybia paulista. The antigen-5 is known as one of the major allergens from Hymenoptera venoms with molecular weight around 23 kDa and unknown biological function, but many studies show its allergenicity. The aim of this study was to identify and to map the linear epitopes of B-cells of this allergen. Taking into account the knowledge the primary sequence of antigen-5, the identification and mapping of epitopes was performed by using multiple synthesis of peptides with the combination of different protocols: SPOT-Synthesis, immunoblotting and indirect method of ELISA with the sera... (Complete abstract click electronic access below)
6

Développement et vectorisation de peptides inhibiteurs du domaine PDZ de CAL pour le traitement de la mucoviscidose / Development and vectorization of CAL PDZ inhibiting peptides for the treatment of cystic fibrosis

Seisel, Quentin 15 June 2018 (has links)
La mucoviscidose est une maladie génétique létale induite par des mutations du canal ionique CFTR, provoquant une perte de sa fonctionnalité au niveau des tissus épithéliaux de divers organes. Le poumon est particulièrement touché et devient sujet à des infections bactériennes chroniques. Dans le but de traiter la maladie, nous avons développé des « stabilisateurs » de la protéine CFTR : il s’agit de peptides inhibant l’interaction de la protéine CFTR avec le médiateur-clé de sa demi-vie à la membrane apicale des cellules épithéliales, la protéine CAL. En particulier, le peptide iCAL36 a démontré une hausse de fonctionnalité de la protéine CFTR mutée. Le but de cette thèse a été de renforcer cet effet biologique en améliorant ses caractéristiques pharmacologiques : pénétration cellulaire (vectorisation), stabilité métabolique et affinité pour la protéine CAL.Le premier axe d’optimisation a été l’internalisation du peptide iCAL36 par 7 différents peptides vecteurs (CPP). Les conjugués correspondants ont été évalués suivant leur cytotoxicité, leur efficacité d’internalisation et leur capacité à maintenir cette efficacité en présence de sérum. Le mécanisme d’entrée des deux meilleurs conjugués a ensuite été étudié. Divers biais couramment rencontrés lors de l’analyse de l’efficacité d’internalisation de peptides vecteurs par des méthodes de fluorescence ont également été identifiés et expliqués. La séquence du peptide iCAL36 a ensuite été modulée par inclusion d’acides aminés non-naturels. Le criblage des interactions peptide/protéine a été réalisé par une procédure optimisée dans le cadre de cette thèse (méthode PIPEPLUS) et a permis d’identifier 32 analogues prometteurs de la séquence d’iCAL36 incluant différentes substitutions. En particulier, une des séquences identifiées (iCAL-Q27) a démontré une affinité 70 fois supérieure à celle du peptide iCAL36 pour la protéine CAL, indiquant une inhibition plus complète de l’interaction CAL/CFTR.Ces résultats majeurs permettent dans leur ensemble de développer des « stabilisateurs » peptidiques de seconde génération pouvant avoir un effet biologique accru dans le contexte de la mucoviscidose. / Cystic fibrosis is a lethal disease induced by genetic mutations of the CFTR chloride channel, leading to a loss of its function in the epithelial tissues of various organs. The lung is particularly affected and becomes a target for chronical bacterial infections. To cure the disease, we developed so-called CFTR “stabilizers”, which are peptides inhibiting the interaction between the CFTR protein and the key mediator of its half-life at the apical membrane of epithelial cells, the CAL protein. In particular, the iCAL36 peptide showed an increase of the functionality of the mutated CFTR protein. The aim of this thesis was to increase this biological effect by improving its pharmacological parameters: cellular internalization (vectorization), metabolic stability and affinity for the CAL protein.The first axis of optimization was the internalization of the iCAL36 peptide by 7 different cell-penetrating peptides (CPP). The corresponding conjugates were evaluated upon their cytotoxicity, their uptake efficiency and their capacity to maintain this efficiency in the presence of proteases. The mechanism of entry of the two best candidates was then studied. Various bias frequently encountered during the analysis of CPP uptake efficiency by fluorescence methods were also identified and explained. Afterwards, the iCAL36 sequence was modulated by inclusion of non-natural amino acids. The screening of the peptide/protein interactions was performed by a method optimized during this thesis (PIPEPLUS process) and allowed the identification of 32 promising analogues of the iCAL36 sequence including several substitutions. In particular, one of these sequences (iCAL-Q27) showed an affinity 70 times stronger for the CAL protein compared to iCAL36, hinting a more complete inhibition of the CAL/CFTR interaction.Overall, these major results grant the access to second-generation “stabilizers” potentially showing an improved biological effect in the context of cystic fibrosis.
7

Darstellung und Screening von kombinatorischen [1,3,5]-Triazin-Bibliotheken an planaren Oberflächen

Scharn, Dirk 25 June 2001 (has links)
Durch parallele SPOT-Synthese wurden trisamino- und amino-oxo-substituierte [1,3,5]-Triazine auf Zellulose- und Polypropylenmembranen dargestellt. Neben der Entwicklung geeigneter Linkerstrategien und dem Einsatz von Aminen und Phenolaten als Bausteine konnte eine Mikrowellenbestrahlung für die Substitution an den membrangebundenen Monochlor-[1,3,5]-triazinen nutzbar gemacht werden. Der Einsatz von gasförmiger TFA zur Abspaltung der Syntheseprodukte von den planaren Oberflächen erlaubte den Erhalt der örtlichen Adressierbarkeit der Verbindungen für Analyse und Screening. Zusätzlich wurde ein neues Konzept für die Synthese von makrocyclischen Peptidmimetika entwickelt. Diese Methode bedient sich der sequenziellen SNAr-Reaktion von ursprünglich orthogonal geschützten Aminogruppen eines Peptides und anderer linearer Oligomere an halogenierten Heteroaromaten wie 2,4,6-Trichloro-[1,3,5]-triazin, 2,4,6-Trichloropyrimidin, 4,6-Dichloro-5-nitropyrimidin und 2,6,8-Trichloro-7-methyl-7H-purin. Die Möglichkeiten dieses neuen Zugangs zu Makrocyclen wurde systematisch mittels SPOT-Synthese untersucht. So wurden Fragen wie zugängliche Ringgrössen, Kompatibilität mit Aminosäuren, Cyclisierungsrichtungen und Verwendung von unterschiedlichen linearen Oligomeren adressiert. Es stellte sich heraus, dass eine Reihe von Peptidmimetika mit unterschiedlichen Ringgrössen (11- bis 37-gliedrige Ringe) und verschiedenen chemischen Strukturen des Rückgrades erhalten werden können. Die erhaltenden [1,3,5]-Triazin-Bibliotheken wurden sowohl in einem Festphasen-Screening als auch in einem Assay in Lösung eingesetzt. Es gelang, de novo Bindungspartner für den monoklonalen Antikörper TAB-2 aus einer Bibliothek aus 8000-zellulosegebundenen [1,3,5]-Triazinen zu finden und neuartige cyclische Peptid-Triazinderivate als Agonisten für einen Somatostatinrezeptor zu entwickeln. / Effective spatially addressed parallel assembly of trisamino- and amino-oxy-1,3,5-triazines was achieved by applying the SPOT-synthesis technique on cellulose and polypropylene membranes. In addition to developing a suitable linker strategy and employing amines and phenolate ions as building blocks, a highly effective microwave assisted nucleophilic substitution procedure at membrane-bound monochlorotriazines was developed. The 1,3,5-triazines obtained could be cleaved in parallel from the solid support by TFA-vapor to give compounds adsorbed on the membrane surface in a conserved spatially addressed format for analysis and screening. A novel concept for the synthesis of macrocyclic peptidomimetics which incorporate heteroaromatic units was developed. The method involves sequential SNAr reactions of former orthogonally protected amino groups of peptides and other linear oligomers on halo-genated heterocycles such as 2,4,6-trichloro-[1,3,5]-triazine, 2,4,6-trichloropyrimidine, 4,6-dichloro-5-nitropyrimidine and 2,6,8-trichloro-7-methyl-7H-purine. The scope of this novel solid phase approach was systematically evaluated by means of the SPOT-synthesis metho-dology. Besides the question of the accessibility of different ring sizes and the compatibility with protecting groups of commonly used amino acids, cyclization direction and the applicability of the technique towards peptidomimetics was studied. It was found that the procedure is well suited to assemble a wide variety of cyclic peptidomimetics differing in both size (11 to 37-membered rings) and chemical nature of the assembled backbones. The obtained [1,3,5]-triazine libraries were subjected to heterogeneous and homogeneous screening assays. De novo binding partners for the monoclonal antibody Tab2 were detected from a 8000-membered library of cellulose-bound 1,3,5-trazines. In addition novel cyclic peptide-triazine derivatives were identified as agonists for a somatostatin receptor.
8

Untersuchung zur Selektivität versus Promiskuität ausgewählter SH3-Domänen

Dröseler, Christoph 21 November 2005 (has links)
SH3-Domänen sind Proteinmodule, die über die Erkennung prolinreicher Peptidsequenzen Protein-Protein-Interaktionen in einer Vielzahl von zellulären Prozessen vermitteln. In der vorliegenden Arbeit wurde die Erkennung von Peptidliganden durch ausgewählte SH3–Domänen hinsichtlich Selektivität versus Promiskuität untersucht. Diese Arbeiten dienten als Vorversuche für einen kompletten proteomischen Ansatz aller SH3-Domänen aus S. cerevisiae. Für die vier ausgewählten SH3-Domänen, nämlich Myo5, Abp1, Yhr016 und Rvs167, wurden die Ligandenpräferenzen durch Interaktionsanalysen mit einem vollständigen Satz prolinreichen Peptidliganden, abgeleitet aus dem Hefeproteom ermittelt. Hierzu wurde ein Peptid–Array Ansatz gewählt. Mit der SPOT-Technologie wurden 2953 15mere Peptide als Array auf einem Celluloseträger Schritt für Schritt synthetisiert. Hierfür wurde zuerst die Art des Celluloseträgers festgelegt und anschließend überprüft, ob sich ein Array mehrmals in Interaktionsexperimenten verwenden lässt. Es zeigte sich, dass eine Regeneration der Arrays nicht möglich war, so dass für jedes Interaktionsexperiment ein neues Peptidarray synthetisiert werden musste. Die Interaktionsstudien bestätigten die Bindung prolinreicher Sequenzmotive als eine universelle Eigenschaft der vier SH3-Domänen, wobei die einzelnen SH3–Domänen-Peptid-Interaktionen von zusätzlichen, spezifitätsdetermierenden Resten im Liganden abhängig waren. Darüber hinaus zeigten die Experimente deutliche Unterschiede hinsichtlich Selektivität und Promiskuität im Erkennungsverhalten der vier Domänen. Die Domänen konnten nach steigender Selektivität an Hand der Bestimmung von Grenzwerten und Integralen geordnet werden, nämlich Myo5 < Abp1 < Yhr016 < Rvs167. Ein gemeinsamer Ligand für alle vier Domänen konnte nicht identifiziert werden. Dagegen konnten gemeinsame Liganden für die Domänenpaare Myo5/Abp1 und Yhr016/Rvs167 bestimmt werden. Die Bindungspräferenzen zweier ausgewählter Liganden, dem Myo5/Abp1 Liganden ERPKRRAPPPAPKKP und dem Yhr016/Rvs167 Liganden VQQDSLPKLPFRSWG, wurden mit Hilfe von Substitutions- und Längenanalysen detailliert charakterisiert. Es zeigte sich deutlich, dass die selektiveren SH3-Domänen Yhr016 und Rvs167 einen klar definierten und kurzen Konsensus im Liganden binden, hingegen die mehr promiskuitiven Domänen Myo5 und Abp1 ein stärker variables und längeres Motiv im Liganden erkennen. Die Ergebnisse dieser Arbeit zeigten, dass die hier gewählte Methode geeignet ist, die proteomische Charakterisierung aller dreißig Hefe SH3-Domänen in Angriff zu nehmen. / SH3-Domains are protein modules, which recognize polyproline sequences. The Domains are involved in a variety of cellular processes. The recognition rules between peptide ligands and selected SH3-Domains were analysed in respect of selectivity versus promiscuity. This dissertation is a preliminary test for subsequent scanning the whole number of yeast SH3-Domains. The SH3-Domains Myo5, Abp1, Yhr016 and Rvs167 were selected and chosen for interaction with all yeast polyproline ligands. A peptide array was chosen and built up with SPOT-Synthesis. 2953 15-mere peptides were spotted as an array on a cellulose membrane and inspected for regeneration method. The regeneration failed and therefore four arrays were synthesised. The scanning experiments revealed an interaction between Ligand and Domain with a common polyproline core. However, these experiments demonstrated as well that specific residues were needed for operative ligand domain interaction. In addition, these four SH3-Domains exhibited clear differences in selectivity and promiscuity of recognition profiles. The integrals and the results after the setting of the threshold showed a distinct increase in selectivity. The arrangement was based on the increasing selectivity: 1. Myo5 2. Abp1 3. but cases of consistency were found between Abp1- and Myo5-SH3, as well as ligands between Yhr16- and Rvs167-SH3. The Myo5-/Abp1-Ligand ERPKRRAPPPAPKKP and the Yhr016-/Rvs167 ligand VQQDSLPKLPFRSWG were selected for characterisation of the peptide domain interaction through the analysis of substitution and length. The data showed that more selective Domains like Yhr016 and Rvs167 had a well-defined and short consensus, whereas more promiscuous Domains like Yhr016 and Rvs167 showed a mutable and longer consensus. In conclusion, the data showed that the SPOT-Synthesis is a suitable technique for a proteomic characterisation of the whole 30 yeast SH3-Domains.
9

Peptidmimetika an Zellulosemembranen

Heine, Helge Niklas 21 July 2000 (has links)
Die SPOT-Synthese an Zellulosemembranen wurde 1992 als eine hocheffiziente Methode zur parallelen Synthese von Peptiden beschrieben. Die wichtigste Anwendung der so synthetisierten Verbindungen ist das direkte Festphasen-Screening. Im Rahmen dieser Arbeit ist es gelungen, das Anwendungsgebiet der SPOT-Methode von Peptiden auf verschiedene Peptidmimetika auszudehnen und durch Screening entsprechender Bibliotheken bioaktive Substanzen zu identifizieren. (1) Peptoid-Synthese an Zellulosemembranen Die Ähnlichkeit von Oligo-N-alkylglycinen (Peptoiden) zu Peptiden sowie die Vereinbarkeit ihrer Synthese mit den Bedingungen der SPOT-Technik ließen sie als besonders geeignete Kandidaten für eine Erweiterung der SPOT-Synthese von Peptiden auf Peptidmimetika erscheinen. Die Peptoide wurden nach der 1992 für die Synthese am Harz beschriebenen Sub-Monomer-Methode synthetisiert, bei der die N-Alkylglycin-Monomere zweistufig durch Bromacetylierung und nachfolgende Bromsubstitution durch ein primäres Amin aufgebaut werden. Die Kernaufgabe bei der Anpassung der Synthesebedingungen an Zellulosemembranen war dabei die Entwicklung einer N/O-selektiven Bromacetylierungsmethode, da die Anwesenheit freier Membran-Hydroxyfunktionalitäten ein Reagenz erfordert, welches eine N-Acylierung in Anwesenheit von O-Nukleophilen zuläßt. Durch Untersuchung mehrerer Aktivester der Bromessigsäure konnte gezeigt werden, daß der kristalline Bromessigsäure-2,4-dinitrophenylester im Hinblick auf Ausbeute und N/O-Selektivität optimale Eigenschaften besitzt. Im Anschluß an die Bromacetylierungsmittel wurden 46 primäre Amine auf ihre Anwendbarkeit bei der Synthese von Modell-Tripeptoiden untersucht. Aus den Ergebnissen konnten Gesetzmäßigkeiten abgeleitet werden, die eine Abschätzung der Verwendbarkeit von Aminen für die Peptoidsynthese im Hinblick auf Flüchtigkeit, sterischen Anspruch, Nukleophilie des Stickstoffatoms sowie vorhandene funktionelle Gruppen in Seitenketten ermöglichen. (2) Synthese und Screening von Peptoid-Bibliotheken Unter den optimierten Synthesebedingungen wurden zwei Bibliotheken mit jeweils 8000 Tri- bzw. Hexapeptoiden synthetisiert. Die Trimeren-Bibliothek beinhaltete dabei den gesamten Sequenzraum basierend auf 20 Bausteinen, während die Verbindungen der Hexameren-Bibliothek aus einem wesentlich größeren, auf 40 Bausteinen basierenden Sequenzraum statistisch ausgewählt wurden. Um zu überprüfen, ob sich die Bibliotheken zur "de novo" Auffindung von Protein-Liganden eignen, wurden sie auf Bindung zum monoklonalen Antikörper Tab-2 untersucht. Es konnten in beiden Fällen bioaktive Oligomere identifiziert werden (Trimere: KD >= 87 µM, Hexamere: KD >= 2.7 µM), die sich vom Peptid-Epitop des Antikörpers [VVSHFND] deutlich unterschieden. (3) Rückgratmodifizierte Peptoide Mit dem Ziel, Rückgratmodifikationen in Peptoide einzufügen, wurden neun Biselektrophile im Rahmen eines "chemischen Screenings" zur Synthese eines Modell-Trimers verwendet. Vier der Bausteine waren geeignet und ermöglichten damit die Einführung von beta-Peptoid-, m- und p-Aminomethylbenzoesäure- sowie Carbamat-Einheiten in Peptoide. Beim Versuch, in analoger Weise auch Harnstoffe zugänglich zu machen, wurde unter den Linker-Spaltungsbedingungen eine Cyclisierung zu Hydantoinen beobachtet. Diese interessante Reaktion wurde näher untersucht, um die SPOT-Methode auf die Synthese von Hydantoinen als heterocyclische Struktur zu erweitern. (4) Synthese von Hydantoinen an Zellulosemembranen Die Bildung von Hydantoinen in einer Cyclisierungsreaktion, bei der Ammoniak aus einem Amid freigesetzt wird, wurde an fester Phase noch nicht genutzt, während dieser Reaktionstyp in Lösung bereits intensiv untersucht wurde. Durch eine Optimierung der Cyclisierungsbedingungen ließ sich die zunächst unvollständige Reaktion zur Vollständigkeit bringen. Auch C-substituierte Hydantoine konnten durch Verwendung von alpha-Aminosäureamiden bzw. -tert.-butylestern enantiomerenrein zugänglich gemacht werden. / SPOT-synthesis on cellulose membranes was introduced as a highly efficient method for the parallel synthesis of peptides in 1992. The most important applications of libraries synthesized by SPOT-synthesis are solid phase binding assays. Within this work the extension of the SPOT-method to the synthesis of various peptidomimetics and the identification of bioactive substances by screening of corresponding libraries is described. (1) peptoid synthesis on cellulose membranes The similarity of oligo-N-alkylglycines (peptoids) and peptides as well as the compatibility of their synthesis with the conditions of the SPOT-technique made them ideally suited for the extension of the SPOT-synthesis from peptides to peptidomimetics. The peptoids were synthesized by the sub-monomer approach originally developed for the synthesis on standard resins in 1992. N-alkylglycine monomers are hereby synthesized in a stepwise manner by bromoacetylation and subsequent substitution of the bromine atom by a primary amine. The most critical point in the adaptation of the synthesis conditions was the development of an N/O-selective reagent for bromoacetylation due to the presence of free hydroxyl functionalities of the membrane support requiring a reagent suitable for N-acylation in the presence of O-nucleophiles. Several active esters of bromoacetic acid were synthesized and tested whereby crystalline 2,4-dinitrophenylbromoacetate gave the best results with respect to yield and N/O-selectivity. After optimization of bromoacetylation 46 primary amines were applied to the synthesis of model tripeptoids. Rules for the applicability of amines in peptoid synthesis with respect to volatility, sterical demand, nucleophilicity of the nitrogen atom and compatibility with sidechain functional groups were derived from the results. (2) synthesis and screening of peptoid libraries Two libraries consisting of 8000 tri- and hexapeptoids respectively were synthesized under optimized conditions. The library of trimers displayed the entire sequence space based on 20 building blocks, whereas the sequences of the hexamers were selected statistically from the sequence space based on 40 building blocks. In order to examine the suitability of the libraries for the "de novo" identification of protein ligands they were screened for binding to the monoclonal antibody Tab-2. Bioactive peptoids could be identified in both cases (trimers: KD >= 87 µM, hexamers: KD >= 2.7 µM) both differing significantly from the peptide epitope [VVSHFND]. (3) backbone modified peptoids In order to introduce backbone modifications into peptoids nine biselectrophiles were applied in the synthesis of model trimers in a chemical screening. Four of the building blocks were well suited allowing the incorporation of beta-peptoid, m- and p-aminomethylbenzoic acid and carbamate units into peptoids. When the introduction of urea-units in a similar approach was attempted hydantoins were formed during cleavage from the solid support. This interesting reaction was examined in detail in order to extend SPOT-synthesis to the synthesis of heterocycles. (4) synthesis of hydantoins on cellulose membranes The formation of hydantoins from terminal amides was not yet described in a solid phase synthesis, whereas it was examined intensively in solution. By optimizing the conditions of cyclization the reaction could be driven to completion. C-substituted hydantoins were obtained as single enantiomers, when alpha-amino acid-amides or -tert. butylesters were used in the synthesis.

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