Studies have shown that air pollution, as well as bark fissure depth and sun exposure of a tree can have an effect on lichen growth as well as abundance of lichen species. The aim of this study was to find out the relative importance of these factors. 211 oaks in south eastern Sweden were surveyed for presence of 17 lichen species, as well as the total number of lichen species. Half of the trees were situated in urban areas and half in the countryside. For each tree the bark fissure depth was measured and the sun exposure of the trunk was estimated. The results showed a significant negative effect on a majority of lichens growing in an urban environment and a significant positive effect on a majority of lichens growing on trees with deep bark fissures. The sun exposure was a less important factor but could not be excluded as a factor affecting lichen occurrence. These results show the negative effect urbanization can have on rare lichen species, as well as be used in the development and maintenance for the nature reserves containing them

A tool for management and conservation of valuable forests in Sweden are WKH:s. In this study WKH:s different in size, connectivity, amount of dead wood and quality of logs were investigated for species richness of bryophytes and brackets on coniferous logs. The aim was to clarify which scales and features that was important for the diversity of species as well as for individual species. The results showed that the amount of dead wood was most important on the site scale, and some species were affected at the landscape scale, a positive effect of valuable tracts. On the scale of individual logs, factors such as diameter, sun exposure, succession stage, contact with ground and ground bryophytes cover was most important. Red-listed species preferred logs with large diameter and late successional stages. The conclusion was that the quality of the substrate and the amount of dead wood was most important, but the amount of WKH:s on the landscape scale was also important for some species.

Measuring and assessing vital rates such as births and deaths are prerequisites for understanding population dynamics. Vital rates may be affected by the density of individuals, even though the importance of density dependence on population dynamics has been debated for a long time. The mallard Anas platyrhynchos is one of the foremost game species in the Holarctic, with millions of birds in hunters’ bags annually. Still, basic knowledge about regulation of mallards’ vital rates is poor, and experimental studies on this topic are rare. In this thesis I have studied survival patterns and density dependence in mallards breeding in Sweden and Finland. Long-term ringing data from both countries were analysed for mortality patterns and causation, as well as for e.g. survival rate estimation. Most of the studies were, though, experiments run over two years involving manipulations of the density of nests, broods and/or adults, in southern and northern Sweden, comprising different biotic regions. Common response variables were survival of nests, ducklings and hens, mainly analysed with program MARK. About 90% of the recovered mallards in Finland and Sweden were hunting kills. However, survival rates were high, ranging from 0.66 to 0.81 for most groups (sex*age). The generality of density dependence was evident since such processes were detected in all studies. Consequently, depredation rate was higher in high nest density compared to low nest density. Survival of ducklings was density-dependent in both boreal and nemoral biotic regions, with food limitation being evident in the former region but not in the latter. In spite of their generality, density-dependent patterns varied within as well between years, and for nest predation rates also between landscape types. The findings about density dependence in breeding mallards in this thesis are novel since they are based on experiments. They are potentially of general interest for management because they embrace a variety of lakes in two geographically distant areas, each being representative for large temperate areas in the northern hemisphere. Detection of density dependence at the local scale may be important at larger scales, too, following the principle of ‘ideal preemptive distribution’ in a source-sink dynamic system.

Models of climate change predict that temperature will increase during the 21th century and the largest warming will take place at high northern latitudes. In addition to warming, predictions for northern Europe include increased annual precipitation and a higher proportion of the precipitation during winter falling as rain instead of snow. These changes will substantially alter the hydrology of rivers and streams and change the conditions for riverine communities. The warming is also expected to result in species adjusting their geographic ranges to stay within their climatic tolerances. Riparian zones and wetlands are areas where excess water determines the community composition. It is therefore likely that these systems will be highly responsive to alterations in precipitation and temperature patterns. In this thesis we have tested the predicted responses of riparian vegetation to climate-driven hydrologic change with a six year long transplant experiment (I). Turfs of vegetation were moved to a new elevation with shorter or longer flood durations. The results demonstrate that riparian species will respond to hydrologic changes, and that without rare events such as unusually large floods or droughts, full adjustment to the new hydrological regime may take at least 10 years. Moreover, we quantified potential effects of a changed hydrology on riparian plant species richness (II) and individual species responses (III) under different climate scenarios along the Vindel River in northern Sweden. Despite relatively small changes in hydrology, the results imply that many species will become less frequent than today, with stochastic extinctions along some reaches. Climate change may threaten riparian vegetation along some of the last pristine or near-natural river ecosystems in Europe. More extensive loss of species than predicted for the Vindel River is expected along rivers in the southern boreal zone, where snow-melt fed hydrographs are expected to be largely replaced by rain-fed ones. With a seed sowing experiment, we tested the differences in invasibility between open wetlands, forested wetlands and riparian zones (IV). All six species introduced were able to germinate and survive in all habitats and disturbance levels, indicating that the tested wetlands are generally invisible. Germination was highest in open wetlands and riparian zones. Increasing seed sowing density increased invasion success, but the disturbance treatments had little effect. The fact that seeds germinated and survived for 2 to 3 years in all wetland habitats indicates that wetland species with sufficiently high dispersal capacity and propagule pressure would be able to germinate and establish here in their respective wetland type. Our results clearly demonstrate that a changed climate will result in substantial changes to functioning, structure and diversity of boreal wetland and riparian ecosystems. To preserve species rich habitats still unaffected by dams and other human stressors, additional protection and management actions may have to be considered.

<p>The complex interplay between biotic and abiotic factors, believed to be responsible for several oak declines in European oak stands during the last three decades, remains poorly understood. Hence, this study aims at clarifying the temporal process of oak declines, as well as identifying individual tree and environmental variables that increase the risk of oak mortality. The study was performed in one of the few areas in northern Europe still holding high densities of old oaks (<em>Quercus robur </em>L<em>.</em>). Cross dating revealed that most trees had died during the last decade. Averaged chronologies and multiple chronological clustering suggested that the onset of the oak decline happened in 1992, when a severe drought took place. Two of the sites showed a rather short time period of heavily reduced growth prior to death, most likely caused by an insect defoliation in combination with a mildew infection of the replacement shoots. Environmental variables presented a rather weak influence on oak mortality. The results support the idea of attributing oak mortality to a combination of long- and short-term stresses, and emphasize the importance of including present as well as past factors when analysing the causes of oak declines.</p>

The distribution of the expressed genotype is moved around in the population over time byevolution. Natural selection is one of the forces that act on the phenotype to change the patterns ofnucleotide variation underlying those distributions. How the phenotype changes over aheterogeneous environment describes the type of evolutionary force acting on this trait and thisshould be reflected in the variation at loci underlying this trait. While the variation in phenotypesand at the nucleotide level in a population indicates the same evolutionary force, it does notnecessarily mean that they are connected. In natural populations the continuous shifting of geneticmaterial through recombination events break down possible associations between loci facilitates theexamination of possible causal loci to single base pair differences in DNA-sequences. Connecting thegenotype and the phenotype thus provides an important step in the understanding the geneticarchitecture of complex traits and the forces that shape the observed patterns.This thesis examines the European aspen, Populus tremula, sampled from subpopulations overan extensive latitudinal gradient covering most of Sweden. Results show a clear geneticdifferentiation in the timing of bud set, a measure of the autumnal cessation of growth, betweendifferent parts of Sweden pointing at local adaptation. In the search for candidate genes thatunderlie the local adaptation found, most genes (25) in the photoperiodic gene network wereexamined for signals of selection. Genes in the photoperiodic network show an increase in theheterogeneity of differentiation between sampled subpopulations in Sweden. Almost half (12) of theexamined genes are under some form of selection. Eight of these genes show positive directionalselection on protein evolution and the gene that code for a photoreceptor, responsible for mediatingchanging light conditions to downstream targets in the network, has the hallmarks of a selectivesweep. The negative correlation between positive directional selection and synonymous diversityindicates that the majority of the photoperiod gene network has undergone recurrent selectivesweeps. A phenomenon that likely has occurred when P. tremula has readapted to the northern lightregimes during population expansion following retracting ice between periods of glaciations. Two ofthe genes under selection also have single nucleotide polymorphisms (SNP) that associate with budset, two in the PHYB2 gene and one in the LHY2 gene. Furthermore, there is an additional SNP inLHY1 that explain part of the variation in timing of bud set, despite the lack of a signal of selection atthe LHY1 gene. Together these SNPs explain 10-15% of the variation in the timing of bud set and 20-30% more if accounting for the positive co-variances between SNPs. There is thus rather extensiveevidence that genes in the photoperiod gene network control the timing of bud set, and reflect localadaptation in this trait.

Against the background of past, recent and future climate change, the present thesis addresses elevational shifts of alpine treelines in the Swedish Scandes. By definition, treeline refers to the elevation (m a.s.l.) at a specific site of the upper trees of a specific tree species, at least 2 m tall. Based on historical records, the first part of the thesis reports and analyzes the magnitude of treeline displacements for the main trees species (Betula pubescens ssp. czerepanovii, Picea abies and Pinus sylvestris) since the early 20th century. The study covered a large and heterogeneous region and more than 100 sites. Concurrent with temperature rise by c. 1.4 °C over the past century, maximum treeline advances of all species amount to about 200 m. That is virtually what should be predicted from the recorded temperature change over the same period of time. Thus, it appears that under ideal conditions, treelines respond in close equilibrium with air temperature evolution. However, over most parts of the landscape, conditions are not that ideal and treeline upshifts have therefore been much smaller. The main reason for that discrepancy was found to be topoclimatic constraints, i.e. the combined action of geomorphology, wind, snow distribution, soil depth, etc., which over large parts of the alpine landscape preclude treelines to reach their potential thermal limit. Recorded treeline advance by maximum 200 m or so over the past century emerges as a truly anomalous event in late Holocene vegetation history. The second part of the thesis is focused more on long-term changes of treelines and one specific and prevalent mechanism of treeline change. The first part of the thesis revealed that for Picea and Betula, treeline shift was accomplished largely by phenotypic transformation of old-established stunted and prostrate individuals (krummholz) growing high above the treeline. In obvious response to climate warming over the past century, such individuals have transformed into erect tree form, whereby the treeline (as defined here) has risen. As a means for deeper understanding of this mode of positional treeline change, extant clonal spruces, growing around the treeline, were radiocarbon dated from megafossil remains preserved in the soil underneath their canopies. It turned out that Picea abies in particular may attain almost eternal life due to its capability for vegetative reproduction and phenotypic plasticity. Some living clones were in fact inferred to have existed already 9500 years ago, and have thus persisted at the same spot throughout almost the entire Holocene. This contrasts with other tree species, which have left no living relicts from the early Holocene, when they actually grew equally high as the spruce. Thereafter they retracted by more than 300 m in elevation supporting that also on that temporal scale, treelines are highly responsive to climate change. The early appearance of Picea in the Scandes, suggests that Picea “hibernated” the last glacial phase much closer to Scandinavia than earlier thought. It has also immigrated to northern Sweden much earlier than the old-established wisdom. The experiences gained in this thesis should constitute essential components of any model striving to the project landscape ecological consequences of possible future climate shifts.

The complex interplay between biotic and abiotic factors, believed to be responsible for several oak declines in European oak stands during the last three decades, remains poorly understood. Hence, this study aims at clarifying the temporal process of oak declines, as well as identifying individual tree and environmental variables that increase the risk of oak mortality. The study was performed in one of the few areas in northern Europe still holding high densities of old oaks (Quercus robur L.). Cross dating revealed that most trees had died during the last decade. Averaged chronologies and multiple chronological clustering suggested that the onset of the oak decline happened in 1992, when a severe drought took place. Two of the sites showed a rather short time period of heavily reduced growth prior to death, most likely caused by an insect defoliation in combination with a mildew infection of the replacement shoots. Environmental variables presented a rather weak influence on oak mortality. The results support the idea of attributing oak mortality to a combination of long- and short-term stresses, and emphasize the importance of including present as well as past factors when analysing the causes of oak declines.

Studiens syfte är att undersöka arterna Buxbaumia viridis och Nowellia curvifolia för att kunna förutse var man hittar dessa signalarter. Detta gjordes genom att död liggande ved undersöktes i Ycke naturreservat samt en närliggande brukas skog, Östergötlands län. Resultaten visar att faktorerna som är avgörande för B. virids är markkontakt och nedbrytningsklass. B. viridis föredrar att växa på lågor i de högre nedbrytningsklasserna (4-7) och med stor andel markkontakt, över 80 %. N. curvifolia beror på diameter (över 60cm), nedbrytningsklass (3-4) och längd (över 30m). Baserat på dessa resultat, kan signalarter lättare upptäckas utan en fullskalig inventering av skogen. / Young trees dominate Swedish forests, which today have a shortage of downed dead wood, key biotopes, and an overall lack of high natural values. By using the mosses Buxbaumia viridis and Nowellia curvifolia the general state of a forest can be assessed. These species indicate high natural values, with a continuity of dead wood in different stages of decay. By investigating ground-lying dead wood, one can predict if the mosses occur in the area or not. This is useful for maintenance of the forests and the preservation of biological diversity. The purpose of this study was to study the species B. viridis and N. curvifolia in Ycke natural reserve in Östergötland, southern Sweden, and learn how to predict where these species occur. The results showed that ground contact (over 80 %) and stage of decay (stage 4-6) of logs were important to B. viridis, with test values 30- 50 times as high as the other test values. To N. curvifolia, the diameter of the logs was the most important. Decay stage and length of the log were also important factors to N. curvifolia. Based on these results, these indicator species can more easily detected without a full scale inventory of the forest.

Nitrogen (N) deposition has increased globally over the last 150 years and further increase is predicted for the future. Nitrogen is an important nutrient for lichens, involved in many processes in both photobiont and mycobiont.  However, N can be a stressor, causing many lichens and lichen communities to disappear with increased deposition. The objective of this thesis was to investigate the response of epiphytic lichens to increased N load. This was done by simulating an increased N deposition to lichens in a boreal forest with low background N, including both short term studies with transplanted lichens and long term studies of naturally established lichens. Alectoria sarmentosa was used as a model species for a N-sensitive lichens and Platismatia glauca as a relatively more N-tolerant lichen. Nitrogen deposition was simulated by daily spraying during the growing season with water and isotopically labeled ammonium nitrate (NH4NO3). In Paper I, I found that when N is supplied in realistic doses (equivalent to deposition of 0.6, 6, 12.5, 25 and 50 kg N ha-1), there were no significant differences in uptake of NO3- or NH4+ in either of the lichen species. The results in Paper II indicate that A. samentosa may be limited by phosphorous (P) and not N limited as expected. That study highlights the importance of P, when studying the effects of N deposition, since P can both mitigate and intensify the negative effects of N on epiphytic lichens. Paper III shows that four years of simulated N deposition caused an alteration of the epiphytic lichen community, since A. sarmentosa decreased in the highest N loads (25 and 50 kg ha-1 year-1), Bryoria spp. decreased to 12.5 kg N and higher loads and Hypogymnia physodes decreased over time for all treatments except in 12.5 kg ha-1, where it only decreased during the first treatment year and then increased after 2007.  The abundance of Platismatia glauca increased over time, independent of treatment. As hypothesized, responses to the treatments differed among species, reflecting their different N optima. In paper IV, the effects of N on carbon-based secondary compounds were studied. None of the studied species (P. glauca, A. sarmentosa, Lobaria scrobiculata and Xanthoria aureola) reduced their concentration of secondary compounds during the experimental period, but in P. glauca the concentration of all compounds were significantly lower in N treated thalli compared with control thalli. The results are consistent with a high degree of constitutive defence in three of the four studied lichens, and we conclude that all four studied lichens seem to have a robust chemical defence system despite considerable manipulation of the environmental conditions. However, we don't know if these lichens are able to keep up the high protection level over longer periods comprising a number of years when more new tissue is formed. In conclusion, long term experiments are necessary to understand lichen response to environmental changes.