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THESIS ORGANISATION This thesis is organised into nine chapters that include seven international and national publications (six accepted and one submitted for publication). The initial overview chapter outlines the justification and direction for this thesis. With the exception of chapter 8 (accepted for publication on the 1st May 2005); all chapters are exact duplicates of published articles in international and national refereed journals (chapters 2 to 7). The initial chapters (2 and 3) presents research findings using a marine fish species, mullet (Mugil cephalus), to measure trace metal bioavailability in Lake Macquarie, NSW Australia. While subsequent chapters (4 to 8) are presenting research under taken to improve the understanding of arsenic cycling in marine and estuarine environments. The final chapter (chapter 9) is a synopsis of the major findings presented in this thesis. Due to the publication nature of this thesis, an unavoidable degree of replication exists within chapters (publications).

Mounted ill. Offprint of the author's journal article in pocket. Includes bibliographies.

<p>The increased use of biomass and recovered waste fuels in favor of fossil fuels for heat and power production is an important step towards a sustainable future. Combustion of waste fuels also offers several advantages over traditional landfilling, such as substantial volume reduction, detoxification of pathological wastes, and reduction of toxic leaches and greenhouse gas (methane) formation from landfills. However, combustion of recovered waste fuels emits more harmful trace elements than combustion of other fuels. These elements are distributed between bottom ash, fly ash and flue gas, depending on the elements partitioning and enrichment behavior. Volatilized harmful trace elements are mainly enriched in the submicron fly ash fraction. If emitted to the atmosphere, submicron particles can penetrate deep into the alveoli of the lungs, causing severe impacts on human health. Consequently, to reduce ash related problems and to control the emissions to the atmosphere, there is an increased need for understanding the physicochemical processes involved in ash transformation, including particle formation.</p><p>The objective of this thesis was to carefully and systematically study the fate of trace elements during combustion, i.e. the chemical form of the elements and the partitioning behavior, by means of chemical equilibrium model calculations, X-ray diffraction, microscopy techniques and various spectroscopy methods. The influence of some fuel additives was also analyzed. Primarily, the elements copper, chromium and arsenic were studied.</p><p>An initial review and evaluation of the content of thermodynamical data in commercial thermochemical databases used for chemical equilibrium model calculations showed that there was a significant difference in number of included phases and species between databases. Thermodynamical data also differed between databases, although in general less for condensed phases than for gaseous species. A state-of-the-art database for Cu, Cr and As was compiled and used for further chemical equilibrium model calculations. The fate of Cu, Cr and As was determined in combustion experiments on wood impregnated with copper, chromium and arsenic (CCA) in a bench scale reactor (15 kW). The results showed that global chemical equilibrium model calculations predicted the overall fate of Cu, Cr and As in bottom ash and ash particles quite well. However, compared to the experimental results the global model overpredicted the formation of refractory calcium arsenates, thus the arsenic volatilization was found to be higher then the predicted volatilization. In terms of chromium volatility, copper was found to be an important refractory element forming stable CuCrO₂(s) and CuCr₂O₄(s) that suppressed the formation of CrO₂(OH)₂(g). The retention and speciation of Cu, Cr and As in bottom ash was further determined from combustion experiments of CCA wood fuel particles in a single particle reactor. Local chemical equilibrium model calculations were performed to simulate the combustion stages of a burning CCA treated wood fuel particle: drying, devolatilization, char burning and post-combustion. The results from the work showed that a mix of global and local chemical equilibrium model calculations is needed to describe the reality and that the combustion stages are partially overlapping. The fate of harmful trace elements, including Cu, Cr and As, was finally studied in full scale (65 MW) combustion experiments. Particles from the raw flue gas emissions were sampled and analyzed. The comparison with chemical equilibrium model calculations showed that the model explained the results well, but due to lack of thermodynamic data for K₂ZnCl₄(s), the formation of this phase could not be predicted.</p>

The thermodynamic history of the Earth is preserved in the trace element record created through igneous processes. The ability to interpret that record depends on the accuracy and precision of numerical models that connect igneous processes with their geochemical consequences. This project answers three major questions concerning the relationship between trace element partitioning and the processes that influence it. One: using a common igneous mineral, clinopyroxene, as a base, how complete is the dataset on which our understanding of this relationship relies? Two: what are the dangers involved with basing models on experiments that contain higher than natural concentrations of trace elements? Three: how accurate and precise is the current numerical model that describes this relationship, and can it be improved? This project determined that the data contain gaps at high pressures and temperatures, are limited for felsic rock compositions, and are lacking for hydrous conditions. A set of experiments conducted on plagioclase feldspar crystallization from a base MORB composition containing various levels of dopants at below wt% levels reveals the presence of non-Henry's Law partitioning behavior through the disruption of the phase equilibria of the system. Lastly, the current clinopyroxene/melt rare earth element partitioning model (Wood and Blundy, 2003) is shown to reasonably, though less than ideally, describe the relationship between igneous processes and their trace-element partitioning results using the thermodynamics of the system. The accuracy was improved through adding a regression, which is based on the major element concentrations of the clinopyroxene and melt to the original numerical expressions. / Graduation date: 2012

Deficiencies of selenium (Se) and iodine (I) are widespread in livestock all over Europe. They have an impact on the animals health. Since the clinical signs of the deficiencies are rarely pathognomic, auxiliary exams, based on blood and milk samples are needed for the confirmation of the diagnosis. To evaluate the Se and I status, the plasmatic Se content, the erythrocytic glutathione peroxydase activity (GPX), and the inorganic plasmatic I (IIP) content are measured routinely. Other analyses, like e.g. the dosage of tri-iodothyronine (T3) or thyrotropine (bTSH) can be used. Once the deficiency is diagnosed, it can be corrected by several methods. The first aim of the study was to evaluate the zinc, copper, Se, and I status of Wallonian dairy and beef herds and to correlate their trace element status to their health. The trace element status of the herds with pathologies was less good than that of healthy herds. Further, more herds with pathologies had deficiencies when compared to healthy ones. Dairy herds had a better trace element status than beef herds. Se and I deficiencies are among the most important ones and have the most severe sequels. Therefore, the subsequent parts of the study focussed on these two trace elements. The second aim was the establishment of a technique for the dosage of bTSH and of reference values in healthy cattle. Reference ranges for bTSH and for thyroxine (T4) have been determined in healthy adult cows and in healthy calves. Thereafter, the next aim was to compare the concentration of bTSH in newborn calves with goitre to those obtained in healthy calves, in order to validate a diagnostic test for this pathology. The bTSH allowed the discrimination of the two groups and to approve the diagnosis of hypothyroidism in some of the calves. The threshold value of bTSH for the diagnosis of hypothyroidism in the newborn calf has been fixed at 35 µU/ml. The fourth aim was to compare the I (IIP) and Se (plasmatic Se, GPX) status as well as the thyroid status (bTSH, T4, T3, rT3) in dried pregnant cows and their calves and in non-pregnant cows, that received normal diet and a diet enriched in Se and I. In those receiving a Se and I enriched diet, the T4 and the bTSH decreased while the IIP, the T3, and the GPX activity increased. In the group that received a diet with normal Se and I contents, only the GPX activity increased. At birth, calves from mothers receiving the Se and I enriched diet, had a higher IPP content and GPX activity, and a lower bTSH concentration than calves from the other group. The last aim was to compare the effects of two different forms of Se (sodium selenite versus seleno-methionine) and two different doses of Se (0.1 versus 0.5 ppm) on the health and the Se status of Se deficient Belgian Blue cows and their calves. The first two groups of cows received a ration with 0.1 and 0.5 ppm, respectively, of Se in the form of sodium selenite (Na-Se 0.1 and Na-Se 0.5), while the third group received 0.5 ppm of Se in the form of seleno-methionine (Y-Se 0.5). The Se content of plasma, colostrum, and milk was higher in the cows of group Y-Se 0.5 when compared to the two other groups. The Se content of the plasma was higher in calves from group Y-Se 0.5 when compared to the two other groups. The daily weight gain of the Y-Se 0.5 group was higher than those of the group Na-Se 0.1. The incidence of diarrhoea among calves in group Na-Se 0.1 was higher than in group Y-Se 0.5. In conclusion, trace elements deficiencies are common in Wallonia and often they are multiple. They play a major role in the aetiology of multifactorial diseases diagnosed in the cattle herds. Deficiencies in Se and in I are most commonly implicated in clinical problems. The diagnosis of these deficiencies is determined by blood analyses. Therefore, the tests need to be differentiated according to their capacity to test the nutritional or the thyroid status. A simultaneous supplementation with I and Se, as well as the form of the supplemented Se, may modify the interpretation of the nutritional and the thyroid status. Better reproduction performances and a better health have been observed in herds with a normal trace element status. Furthermore, the advantage of the supplementation with Se in the form of seleno-methionine has been demonstrated in comparison to sodium selenite in deficient Belgian Blue cattle. This study opened numerous perspectives. The measurement of bTSH should be implemented in laboratories in order to offer it as a routine analysis to the practitioning veterinarian, who could use this tool in the framework of many diseases other than goitre. From a fundamental point of view, the dosage of deiodinases would allow the understanding of the regulation and of the synthesis of the thyroid hormones in bovines, and identifying the role of Se and I in this process. Finally, following the discoveries concerning the seleno-methionine, the effect of organic forms of other trace elements in bovine supplementation should be investigated. / Les carences en sélénium (Se) et en iode (I) sont répandues en Europe chez le bétail et ont des répercussions sur leur santé. Les signes cliniques de carence sont rarement pathognomoniques, ce qui nécessite le recours à des examens de sang ou de lait afin de confirmer le diagnostic. Pour évaluer le statut en Se et en I des bovins, le dosage du Se plasmatique, de lactivité de la glutathion peroxydase érythrocytaire (GPX) et de lI inorganique plasmatique (IIP) est réalisé en routine. Lévaluation du statut thyroïdien se fait principalement via la détermination de la thyroxine (T4) dans le plasma. Dautres analyses sont utilisables à cette fin, telles que la tri-iodothyronine (T3) ou la thyrotropine (bTSH). Une fois le diagnostic de carence posé, la carence peut être corrigée de diverses façons. Le 1er objectif de ce travail a été dévaluer les statuts en zinc, cuivre, Se et I dans les exploitations bovines laitières et viandeuses en Wallonie et de mettre en corrélation ces statuts avec létat de santé des troupeaux étudiés. Le statut en oligo-éléments (O-E) dans les troupeaux avec pathologies était moins bon que celui des troupeaux sains. De même, davantage de troupeaux avec pathologies étaient carencés par rapport aux troupeaux sains. Les troupeaux laitiers bénéficiaient de meilleurs statuts par rapport aux troupeaux viandeux. Les carences en Se et en I sont parmi les plus importantes et les plus lourdes de conséquences. La suite du travail sest donc focalisé sur ces 2 oligo-éléments. Le 2ème objectif a consisté à mettre au point un dosage de la bTSH et à établir des valeurs de référence chez des bovins adultes en bonne santé. Un intervalle de référence pour la bTSH et la T4 a été établi pour des vaches adultes saines et des veaux nouveau-nés sains. En corollaire, lobjectif suivant a été de comparer la concentration en bTSH trouvée chez des veaux nouveau-nés atteints dun goitre avec celle obtenue chez des veaux nouveau-nés en bonne santé, afin de valider un test diagnostique pour cette pathologie. La bTSH a permis de discriminer ces 2 groupes de veaux et détablir le diagnostic dhypothyroïdie chez certains veaux goitreux. Une valeur seuil de bTSH pour poser le diagnostic dhypothyroïdie chez des veaux nouveau-nés a été établie à 35 µU/ml. Le 4ème objectif a été de comparer les statuts en I (IIP) et Se (Se plasmatique, GPX) mais également le statut thyroïdien (bTSH, T4, T3, rT3) de vaches taries gestantes ou non et, le cas échéant, de leur veau, qui ont reçu une ration normalement pourvue ou enrichie en I et Se. Chez les vaches recevant une ration enrichie en Se et I, la T4 et la bTSH ont diminué alors que lIIP, la T3 et lactivité de la GPX ont augmenté. Dans le groupe recevant une ration normalement pourvue en Se et I, seule lactivité de la GPX a augmenté. A la naissance, les veaux provenant des mères ayant reçu une ration enrichie en Se et I avaient une concentration en IIP et une activité de la GPX supérieures et une concentration en bTSH inférieure par rapport aux veaux de lautre groupe. Le dernier objectif a été de comparer les effets sur la santé et le statut en Se de vaches BBB carencées et de leur veau de deux formes (sélénite de soude versus séléno-méthionine) et de deux doses différentes de Se (0,1 versus 0,5 ppm). Les deux premiers groupes de vaches ont reçu une ration avec respectivement 0,1 et 0,5 ppm de Se sous forme de sélénite de soude (Na-Se 0,1 et Na-Se 0,5), alors que le troisième groupe de vaches a reçu 0,5 ppm de Se sous forme de séléno-méthionine (Y-Se 0,5). Les concentrations en Se dans le plasma, le colostrum et le lait étaient plus élevées chez les vaches du groupe Y-Se 0,5 par rapport aux 2 autres groupes. La concentration en Se plasmatique était plus importante chez les veaux du groupe Y-Se 0,5 par rapport à celles des autres groupes. Le gain quotidien moyen des veaux du groupe Y-Se 0,5 était plus important par rapport à celui du groupe Na-Se 0,1. La prévalence de diarrhée des veaux du groupe Na-Se 0,1 était plus élevée par rapport à celle du groupe Y-Se 0,5. En conclusion, les carences en oligo-éléments sont fréquentes en Wallonie et souvent multiples. Elles interviennent de manière importante dans létiologie des troubles multifactoriels constatés dans les exploitations bovines. Les carences en Se et en I sont celles qui occasionnent le plus de répercussions cliniques. Le diagnostic de ces carences en particulier repose sur lutilisation de dosages sanguins. Il faut y distinguer ceux qui mesurent le statut nutritionnel en I et Se de ceux qui évaluent plutôt le statut thyroïdien. Une supplémentation simultanée en I et en Se peut modifier linterprétation des statuts nutritionnel et thyroïdien, de même que la forme sous laquelle le Se est apporté aux bovins. De meilleures performances zootechniques et une meilleure santé sont constatées dans les troupeaux supplémentés en O-E qui jouissent de statuts corrects. De plus, de ce point de vue, la supériorité de la supplémentation en Se sous forme de séléno-méthionine a été démontrée par rapport au sélénite de soude chez des bovins BBB carencés. De nombreuses perspectives se dégagent de ce travail. Le dosage de la bTSH est à implémenter dans des laboratoires en vue den faire une analyse de routine à disposition des vétérinaires praticiens qui pourraient ainsi utiliser cet outil dans le cadre de nombreuses autres pathologies que le goitre congénital. Dun point de vue plus fondamental, le dosage des désiodases permettrait daffiner la compréhension de la régulation de la synthèse des hormones thyroïdiennes chez le bovin, en précisant les rôles respectifs de lI et du Se à ce propos. Enfin, à linstar des découvertes concernant la séléno-méthionine, lintérêt annoncé des formes organiques des autres O-E chez les ruminants devrait être investigué plus avant.

The increased use of biomass and recovered waste fuels in favor of fossil fuels for heat and power production is an important step towards a sustainable future. Combustion of waste fuels also offers several advantages over traditional landfilling, such as substantial volume reduction, detoxification of pathological wastes, and reduction of toxic leaches and greenhouse gas (methane) formation from landfills. However, combustion of recovered waste fuels emits more harmful trace elements than combustion of other fuels. These elements are distributed between bottom ash, fly ash and flue gas, depending on the elements partitioning and enrichment behavior. Volatilized harmful trace elements are mainly enriched in the submicron fly ash fraction. If emitted to the atmosphere, submicron particles can penetrate deep into the alveoli of the lungs, causing severe impacts on human health. Consequently, to reduce ash related problems and to control the emissions to the atmosphere, there is an increased need for understanding the physicochemical processes involved in ash transformation, including particle formation. The objective of this thesis was to carefully and systematically study the fate of trace elements during combustion, i.e. the chemical form of the elements and the partitioning behavior, by means of chemical equilibrium model calculations, X-ray diffraction, microscopy techniques and various spectroscopy methods. The influence of some fuel additives was also analyzed. Primarily, the elements copper, chromium and arsenic were studied. An initial review and evaluation of the content of thermodynamical data in commercial thermochemical databases used for chemical equilibrium model calculations showed that there was a significant difference in number of included phases and species between databases. Thermodynamical data also differed between databases, although in general less for condensed phases than for gaseous species. A state-of-the-art database for Cu, Cr and As was compiled and used for further chemical equilibrium model calculations. The fate of Cu, Cr and As was determined in combustion experiments on wood impregnated with copper, chromium and arsenic (CCA) in a bench scale reactor (15 kW). The results showed that global chemical equilibrium model calculations predicted the overall fate of Cu, Cr and As in bottom ash and ash particles quite well. However, compared to the experimental results the global model overpredicted the formation of refractory calcium arsenates, thus the arsenic volatilization was found to be higher then the predicted volatilization. In terms of chromium volatility, copper was found to be an important refractory element forming stable CuCrO2(s) and CuCr2O4(s) that suppressed the formation of CrO2(OH)2(g). The retention and speciation of Cu, Cr and As in bottom ash was further determined from combustion experiments of CCA wood fuel particles in a single particle reactor. Local chemical equilibrium model calculations were performed to simulate the combustion stages of a burning CCA treated wood fuel particle: drying, devolatilization, char burning and post-combustion. The results from the work showed that a mix of global and local chemical equilibrium model calculations is needed to describe the reality and that the combustion stages are partially overlapping. The fate of harmful trace elements, including Cu, Cr and As, was finally studied in full scale (65 MW) combustion experiments. Particles from the raw flue gas emissions were sampled and analyzed. The comparison with chemical equilibrium model calculations showed that the model explained the results well, but due to lack of thermodynamic data for K2ZnCl4(s), the formation of this phase could not be predicted.

Chlamydophila pneumoniae (C. pneumoniae) has been suggested as a stimulator of chronic inflammation in atherosclerosis. C. pneumoniae DNA was demonstrated in aortic biopsies in 50% of patients with stable angina pectoris or acute coronary syndrome undergoing coronary artery bypass grafting. C. pneumoniae mRNA, a marker of replicating bacteria, was demonstrated in 18% of the aortic biopsies. Inflammation may have a role in the pathogenesis of thoracic aortic aneurysm, aortic dissection and aortic valve stenosis. C. pneumoniae DNA was demonstrated in aortic biopsies in 26% of thoracic aortic aneurysm patients and in 11% of aortic dissection patients undergoing thoracic surgery and in 22% of stenotic aortic heart valves from patients undergoing aortic valve replacement. No bacterial mRNA was demonstrated in these aortic biopsies, nor in the valves, suggesting that the infection has passed into a persistent state. C. pneumoniae DNA was demonstrated in peripheral blood mononuclear cells in only 5% of aortic valve stenosis patients and not in thoracic aortic aneurysm or aortic dissection patients, suggesting that the bacterium disseminated to the cardiovascular tissue long before the patient required surgery. The copper/zinc ratio in serum, a marker of infection/inflammation, was significantly elevated in thoracic aortic aneurysm patients, supporting an inflammatory pathogenesis. Patients positive for C. pneumoniae in the aortic valve had more advanced coronary atherosclerosis, further supporting a possible role for C. pneumoniae in atherosclerosis. Mice were infected with C. pneumoniae that disseminated to all organs investigated (i.e. lungs, heart, aorta, liver and spleen). Trace element concentrations were altered in infected animals with an increased copper/zinc ratio in serum, a progressively increased iron concentration in the liver and a progressively decreased iron concentration in serum. Iron is important for C. pneumoniae metabolism, and a changed iron homeostasis was noted in infected mice by alterations in iron-regulating proteins, such as DMT1 and hepcidin.

Oxidized hydrous intermediate composition magmas are responsible for porphyry copper (Cu ±Mo ±Au) deposits and epithermal Au ore deposits formed globally in the shallow crust (Sillitoe, 2010; Seedorff et al., 2005). Recently, zircon geochemistry has been used to characterize both productive and barren intrusions associated with porphyry Cu-Au ore deposits. Zircon composition differs slightly between the two intrusive groups, and researchers have proposed that zircon in productive intrusions has crystallized from a relatively more oxidized melt compared to barren intrusions (Ballard et al., 2002; Muñoz et al., 2012). Zircon rare earth elements record anomalies in Ce and Eu contents that allow estimation of the ratio of oxidized versus reduced species, i.e. Ce⁴⁺/Ce³⁺ (Ce[superscript IV]/Ce[superscript III]) and Eu³⁺/Eu²⁺ (Eu/Eu*)[subscript CN]. This study focuses on understanding the compositions of Eocene magmas associated with sediment hosted Carlin gold deposits and the gold-copper ores of the Battle Mountain porphyry Cu-Au-skarn district in northern Nevada. Zircon trace element composition was analyzed using LA-ICP-MS and SHRIMP-RG to determine differences between mineralizing and non-mineralizing intrusions in northern Nevada and to compare these compositions with known porphyry Cu-Au type magmas. These zircon and rock compositional data was then used to test the hypothesis of a magmatic origin of the Carlin type gold deposits (Muntean et al., 2011). Zircon U-Pb ages were calculated using multiple SHRIMP-RG spot analyses of each sample for two Carlin biotite porphyry dikes, two Battle Mountain porphyry dikes and the granodiorite of the Copper Canyon stock. The new U-Pb age dates for Carlin porphyry dikes are 38.7 ± 0.5 Ma and 38.8 ± 0.4 Ma. The age of the Copper Canyon stock is 38.0 ± 0.7 Ma, and the age of the Battle Mountain porphyry dikes are 40.2 ± 0.4 Ma and 41.3 ± 0.4 Ma. The Carlin dike ages are the same age, within uncertainty, with previous studies conducted (Mortensesn et al., 2000). The productive porphyry dikes from the Battle Mountain district have Ce(IV)/Ce(III) ratios of 500 to 10000 and a wide range of (Eu/Eu*)[subscript CN] values between 0.3 and 0.7 respectively. Carlin porphyry dikes have Ce(IV)/Ce(III) values between 100 and 1000, and a more limited (Eu/Eu*)[subscript CN] range of 0.5 to 0.7. Barren Eocene intrusions at Harrison Pass and Caetano have much lower Ce(IV)/Ce(III) ratios that range from 20 to 500, and have a very large span of (Eu/Eu*)[subscript CN] from 0.03 to 0.6. Calculated Ce(IV)/Ce(III) and (Eu/Eu*)[subscript CN] of zircon of this study illustrate a distinction between productive and barren intrusions in northern Nevada, and demonstrate a geochemical link between porphyry type magmas and dikes associated with Carlin type gold deposits. These ratios may provide a useful means of evaluating potentially economic geologic terranes and serving as a method to infer relative oxidation state of zircon bearing intrusive rocks. / Graduation date: 2013

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