Approved for public release, distribution is unlimited / This thesis analyzes the retention of female Naval officers, focusing on the relationship between officer selection metrics and retention beyond minimum service obligation and the effect of lateral transfers on the retention of junior officer in the Unrestricted Line. The retention analysis utilizes data from Naval Academy cohorts 1988-1991, while the lateral transfer analysis uses data from officer cohorts 1986-1991 available through the Officer Promotion History File. The retention analysis focuses on whether the elements of the Naval Academy's Whole Person Multiple (WPM) are valid predictors of graduation and fleet retention beyond minimum service requirement for female officers. Results indicate that the WPM is generally a poor predictor of female graduation and retention, a result that is contrary to previous research that used mixed gender or male-only samples. Only the Math SAT, English/Math teacher recommendation score, and athletic/non-athletic extracurricular activities score have positive and significant relationships with retention beyond minimum service requirement. Thus, it is recommended that the Naval Academy Admissions Board develop a revised selection metric for females in order to select and commission female officers with a greater propensity for career service. The lateral transfer analysis seeks to determine the characteristics of officers in the Navy's lateral transfer system. Results reveal that women are more likely than men to transfer from Unrestricted Line to Restricted Line communities. This higher likelihood of lateral transfer for women is considered a major contributor to the low retention of female officers in Unrestricted Line communities. / Lieutenant, United States Navy

No description available.

Whole genome sequencing (WGS) has transformed molecular infectious diseases epidemiology in the last five years, and represents a high resolution means by which to catalogue the genetic content and variation in bacterial pathogens. This thesis utilises WGS to enhance our understanding of antimicrobial resistance in two clinically important members of the Enterobacteriaceae family of bacteria, namely Escherichia coli and Klebsiella pneumoniae. These organisms cause a range of clinical infections globally, and are increasing in incidence. The rapid emergence of multi-drug resistance in association with infections caused by them represents a major threat to the effective management of a range of clinical conditions. The reliability of sequencing and bioinformatic methods in the analysis of E. coli and K. pneumoniae sequence data is assessed in chapter 4, and provides a context for the subsequent study chapters, investigating resistance genotype prediction, outbreak epidemiology in two different contexts, and population structure of an important global drug-resistant E. coli lineage, ST131 (5-8). In these, the advantages (and limitations) of short-read, high-throughput, WGS in defining resistance gene content, associated mobile genetic elements and host bacterial strains, and the relationships between them, are discussed. The overarching conclusion is that the dynamic between all the components of the genetic hierarchy involved in the transmission of important antimicrobial resistance elements is extremely complicated, and encompasses almost every imaginable scenario. Complete/near-complete assessment of the genetic content of both chromosomal and episomal components will be a prerequisite to understanding the evolution and spread of antimicrobial resistance in these organisms.

This study characterized Salmonella enterica serovar Heidelberg from human, abattoir poultry and retail poultry isolates to examine the molecular relationships of cefoxitin resistance between these groups. A total of 147 S. Heidelberg (70 cefoxitin-resistant and 77 cefoxitin-susceptible) isolates were studied. All cefoxitin-resistant isolates were also resistant to amoxicillin-clavulanic acid, ampicillin, ceftiofur and ceftriaxone, and all contained the CMY-2 gene. Pulsed-field gel electrophoresis typing illustrated that 93.9% isolates clustered together with ≥ 90% similarity. Core genome analysis using whole genome sequencing identified 12 clusters of isolates with zero to four single nucleotide variations. These clusters consisted of cefoxitin-resistant and susceptible human, abattoir poultry and retail poultry isolates. Analysis of CMY-2 plasmids from cefoxitin-resistant isolates revealed all belonged to incompatibility group I1. Analysis of plasmid sequences using WGS revealed high identity (95-99%) to a previously described plasmid (pCVM29188_101) found in Salmonella Kentucky. When compared to pCVM29188_101, all sequenced cefoxitin-resistant isolates were found to carry one of ten possible variant plasmids. The discovery of several clusters of isolates from different sources with zero to four SNVs suggests that transmission between human, abattoir poultry and retail poultry sources may be occurring. The classification of newly sequenced plasmids into one of ten sequence variant types suggests transmission of a common CMY-2 plasmid amongst S. Heidelberg with variable genetic backgrounds. / October 2016

Norovirus is the commonest cause of viral gastroenteritis, affecting all age groups worldwide. Outbreaks frequently occur in semi-closed communities such as schools, cruise ships, prisons and hospitals. Within the healthcare environment, the economic and logistical burdens and the inconvenience caused by norovirus is significant, since ward closure remains central to infection control. The aim of this study was to investigate norovirus transmission dynamics during hospital outbreaks. The ultimate goal was to provide information that could, in future, lead to the development of novel, less disruptive approaches to curtailing the spread of infection. The study explored the application of 'next generation' high throughput DNA sequencing technologies to the determination of large numbers of norovirus genomes. Whole genome sequences provide the highest possible level of discrimination among viruses, information which is essential to the identification of linked and independent cases of infection. The approach exploits the high norovirus mutation rate, which is typical of RNA viruses. Consequently, viruses within a single ward which differ by more than a few SNVs can be considered to represent independent introductions, rather than a single outbreak. Whole genome sequence data (determined for noroviruses collected between 2009 and 2013) were combined with epidemiological data, providing further insights into transmission dynamics. These data identified multiple independent virus introductions during single ward outbreaks. The possible origin of such outbreaks in Oxfordshire hospitals were investigated using viruses originating in the local community, and in other healthcare environments distributed throughout the UK. Whole genome sequences of noroviruses from consecutive years were genetically divergent, confirming the rapid evolution of the virus over time and excluding the possibility of prolonged environmental contamination as a reservoir of infection. Such detailed information on norovirus transmission within the healthcare environment could inform alternative future approaches to optimising infection control within the healthcare setting.

Title: Influence of whole body vibration training on postural stability in selected sporting population Objectives: The aim of this study is to compare the influence of whole body vibration training on the stability of the human body and assessing the possibility of using this training method to improve postural stability in selected sporting population. Methods: 15 mainly beach volleyball players (athletes) were randomly assigned into two groups. Experimental group (n 8) in addition to their own training practiced twice a week on the Power Plate, while the control group (n 7) to continue the current practice of beach volleyball. The experimental group participated in a total of twelve units during the six-week exercise intervention. We reviewed the standard deviation and average values of COP displacements in the anteroposterior, mediolateral and overall direction of the COP path. For this purpose, we used pressure platform Footscan. Results: The results indicate a clear trend to improve postural stability at the beach volleyball player after a six-week intervention, whole body vibration training. Improvement was most noticeable in tests Flamengo (standing on one leg), in which the total COP path decreased for all probands at the right lower extremity and in six of the eight probands in the left...

Objective: Charcot-Marie-Tooth disease (CMT) is the most common hereditary motor and sensory neuropathy. Genetic mutation causes neurological disorder of peripheral nervous system. Diseases most common signs and symptoms are distal muscle weakness, foot deformities and somatosensory defect. One of the most notable consequences of the disease is balance disorder. The goal of this study was to ascertain impact of one-off application of vibration therapy on postural stability in CMT and referential group. Method: There were 16 patients diagnosed with CMT that participated in the research, 15 of which finished all procedures (average age 44.3 years, age ranges from 25 to 57 years, 12 woman and 3 men). Referential group was composed of healthy people of similar sex and age. All probands underwent measuring on Balance Master before vibration therapy, immediately after and 30 minutes later. The therapy take place in standing position in the Power Plate, therapy lasted for 5 minutes. Results: A significant improvement of Endpoint Excursion, Maximum Excursion, Movement Velocity and Sway velocity parameters was established after applying one-off vibration therapy in group of patients diagnosed with CMT. This effect endured 30 min after vibration therapy. Also we discovered that vibration therapy has stronger...

Les duplications de gènes et de génome sont considérées comme des moteurs de l’évolution des génomes eucaryotes. Trois duplications de génome complet (ou polyploïdisations) sont survenues au cours de l’évolution des vertébrés, dont deux à la base des vertébrés, et une troisième chez l’ancêtre commun des poissons téléostéens. La diversité morphologique, anatomique et écologique des espèces qui partagent un ancêtre commun polyploïde chez les chordés suggère un rôle des duplications de génome dans la diversification des espèces. En particulier, les duplications de génome semblent avoir facilité l’émergence du plan d’organisation des vertébrés, et être à l’origine de la radiation évolutive survenue chez les poissons téléostéens. Cependant, la portée évolutive des duplications de génome, et notamment les deux hypothèses majeures formulées ci-Avant, restent des questions ouvertes et en grande partie non résolues. Le groupe des téléostéens, qui compte plus de la moitié des espèces vertébrés existantes et partage un ancêtre commun polyploïde, constitue un modèle pertinent pour évaluer la contribution des duplications de génome dans l’expansion des familles multigéniques chez les vertébrés, pour comprendre les mécanismes évolutifs qui façonnent l’évolution des familles de gènes, et finalement tester les hypothèses moléculaires qui peuvent relier duplication de génome et biodiversité. Ainsi, nous avons étudié l’impact de la duplication de génome survenue à la base des téléostéens sur l’évolution de la famille multigénique sox, essentielle pour le développement et l’homéostasie des vertébrés. Notre analyse du contenu et de l’organisation des gènes sox dans 15 génomes de vertébrés, dont 10 téléostéens, révèle une importante expansion de l’ensemble de la famille des gènes sox dans ce vaste groupe de vertébrés, et démontre que cette expansion est essentiellement due à la duplication de génome survenue à la base des téléostéens. Les gènes sox dupliqués par duplication de génome semblent avoir été perdus par non-Fonctionnalisation dans certaines lignées, et préservés en deux copies par sous-Fonctionnalisation et/ou néo-Fonctionnalisation dans certaines autres lignées. Notre étude indique en effet une divergence lignée-Spécifique des patrons d’expression entre les gènes sox dupliqués chez différentes espèces de téléostéens. Ainsi, l’expansion du répertoire des gènes sox à la base des téléostéens semble avoir été suivi d’une évolution lignée-Spécifique du contenu et des fonctions de la famille des gènes sox chez les poissons téléostéens. Cette étude supporte l’hypothèse d’un rôle des duplications de génome dans l’enrichissement et la diversification subséquente des répertoires de gènes du développement tels que les gènes sox, et son rôle potentiel dans la diversification des espèces vertébrés. / Gene and genome duplications are major engines of eukaryotic genome evolution. Three rounds of whole genome duplication (WGD) have occurred during vertebrate evolution, two rounds at the base of the vertebrate lineage, and a third round in the common ancestor of the teleostean fish (the so-Called teleost-Specific WGD). In chordates, species that share a polyploid ancestor are characterized by a huge morphological, anatomical and ecological diversity suggesting a role of WGDs in species diversification. For instance, it is considered that these drastic genomic events provided the raw material for the emergence of the vertebrate body plan, and facilitated speciation processes during the teleost radiation. However, how WGD is related to phenotypic diversification or to major evolutionary transitions are fundamental questions that remain largely unsolved. Teleostean fish constitute more than half of all extant vertebrates and share a polyploid ancestor. Thus, they provide a relevant model to study the importance of WGDs in gene families expansion, to understand evolutionary mechanisms that drive the evolution of these families and, finally, to test molecular hypotheses that might relate WGD and biodiversity. In this project, we studied the impact of the teleost-Specific WGD on the evolution of the sox gene family which are involved in development and homeostasis in vertebrates. Our analysis of the content and the genomic organization of the sox genes in 15 vertebrate genomes, including 10 teleosts, reveals an important expansion of this family in the teleost lineage, and demonstrates that this expansion is mainly due to the teleost-Specific WGD. The duplicated sox genes seem to have been lost by non-Functionalization in certain lineages, and preserved in two copies in others by neo-Functionalization and/or sub-Functionalization. Indeed, this study indicates lineage-Specific divergence in expression patterns between duplicated sox genes in different teleostean species. Hence, the sox family expansion that occurred in the last common ancestor of teleostean fish seems to have been followed by a lineage-Specific evolution of the content and functions of the sox family in this group. Our study supports the hypothesis for a role of WGDs in the enrichment and diversification of developmental genes repertories and its potential role in species diversification in vertebrates.

Syftet med denna undersökning var att undersöka hur några lärare organiserar den tidiga läsundervisningen genom olika metoder och arbetssätt i årskurs ett. Vi ville även undersöka hur dessa lärare motiverade sina elever till sin läsinlärning. För att samla empirisk data har vi använt oss av kvalitativa intervjuer. Resultatet visade att lärarna bedriver en snarlik undervisning med Phonics-metoden som utgångspunkt men med inslag av andra metoder. Slutsatsen är att lärare inte ska låsa in sig på en metod eftersom att alla elever lär sig olika då vi människor är olika. De tillfrågade lärarna anser det vara viktigt att man anpassar sin undervisning så att alla elever utvecklas i sitt lärande.

Master of Science / Department of Animal Sciences and Industry / Dale A. Blasi / Effects of corn processing with or without the inclusion of wet corn gluten feed (WCGF) on growth and performance were analyzed in two experiments. Treatments for both experiments were a diet including 47% whole-shelled corn (WSC) with no WCGF (WSC/0WCGF), a diet including 29% WSC with 30% WCGF (WSC/30WCGF), a diet including 47% dry-rolled corn (DRC) with no WCGF (DRC/0WCGF), and a diet with 29% DRC with 30% WCGF (DRC/30WCGF). Exp. 1 used 279 crossbred calves (230 kg) that were allocated to treatments in a 2x2 factorial completely randomized block design. No corn processing effects (all P > 0.31) were observed. Final BW was increased when WCGF was included in the diet (P = 0.03). ADG was increased for diets with WCGF (P = 0.03). Efficiency was not affected by the incorporation of WCGF in the diet. Digestibility of DM (P = 0.006) and starch (P = 0.009) was increased by the dietary inclusion of WCGF. There were no benefits observed for processing corn, but including WCGF at 30% (DM) increased gains and overall performance. Exp. 2 was a digestibility experiment using 5 ruminally cannulated Holstein heifers (248 ± 13 kg BW) in a 4 × 4 Latin square with an additional animal that was administered the same treatment sequence as another heifer on trial. No corn processing effects were observed for DM, starch, and ADF intake (all P ≥ 0.09). Dietary WCGF inclusion increased starch, non-starch and ADF intake (all P ≤ 0.01). Digestibility of DM, starch, non-starch, and ADF was not affected by corn processing, but DM, non-starch, and ADF digestibility were increased by WCGF inclusion in the diet (P ≤ 0.03). Ruminal pH was not affected by corn processing (P = 0.90) or dietary WCGF inclusion (P = 0.09). No corn × WCGF interactions were detected. There also was no difference among VFAs or total VFA concentration (all P ≥ 0.12) for corn processing effects. Passage rate (%/h) and ruminal liquid volume was not affected by corn processing or dietary WCGF inclusion (all P ≥ 0.66).