Cette thèse s'inscrit dans un contexte de recherche d'amélioration des propriétés d'extraction d'ions sur phase solide. Au travers de ces travaux est développée une méthodologie innovante visant à adapter la structuration, la morphologie ainsi que les fonctions d'extraction aux ions et aux milieux cibles. Pour cela, nous avons opté pour une méthode « tout-en-un » passant par l'utilisation d'organosilanes amphiphiles. Composées d'une tête condensable et d'une tête « extractante » aux extrémités d'une chaîne hydrophobe, ces molécules polyvalentes font office à la fois d'agent matriciel silicique, d'agent structurant et d'agent extractant. Par analogie avec un tensioactif, nous avons montré que l'auto-assemblage de telles molécules est gouverné par des paramètres liés notamment à la taille de la partie hydrophile de la molécule. En utilisant différents agents de courbure, il est possible de jouer sur la taille du couple agent de courbure/fonction extractante. La courbure à l'interface entre le milieu et l'agrégat est donc ajustable, ce qui conduit à différents types d'agrégation. Par cette méthode, des bicouches, des vésicules et des micelles directes cylindriques ont été obtenues. A l'inverse, l'ajout de précurseur de silice (TEOS) dans la préparation peut conduire au gonflement des structures et à l'inversion de l'agrégation vers des micelles inverses cylindriques. L'effet du solvant a également été étudié et a permis d'aboutir à des morphologies très diverses. Enfin, l'accessibilité des fonctions et les propriétés d'extraction des matériaux élaborés ont été évaluées au travers de modifications chimiques de la tête extractante et de tests d'extraction d'ions métalliques (Terres rares, platinoïdes …). / The aim of this study is to develop a suitable “all-in-one” approach involving amphiphilic organosilane precursors in order to prepare hybrid materials for solid phase extraction processes. Such molecules combine both condensable and functional parts around a long hydrophobic alkyl chain.Similarly to a surfactant, the amphiphilic behavior of the organosilane molecules is governed by the size of the hydrophilic extractant function. By playing with the curvature agent size, it is possible to adjust the size of the couple extractant part/curvature agent at the interface between the aggregates and the surrounding media. Therefore, the aggregation shape is tunable. This approach constitutes an efficient and original method in order to tune the nanostructure of highly functionalized silica at the early stage of the elaboration. Hybrid organic-inorganic planar objects and vesicles are obtained for smaller curvature agents. Increasing the size of the curvature agent results in a transition of the aggregation geometry from vesicles to cylindrical direct micelles, leading to highly functionalized nanofibers.Comparatively, the addition of a silica precursor as TEOS in the preparation results in the swelling of the condensable part of the amphiphilic organosilane molecules. Thereby, as a curvature agent, the addition of TEOS allows tuning the aggregation towards reverse cylindrical micelles. Solvent effects have also been evaluated, appearing as a critical morphological parameter. Macroporous materials, blackberry-like particles and elongated or spherical nanoparticles can be obtained depending on the solvent.Finally, the accessibility of the functions and the extraction properties of the materials have been studied through chemical modifications and metallic ion extraction experiments (Rare earth elements, platinoids …).

Un des principaux challenges dans le contexte du développement des matériaux biocomposites est de remplacer les matières plastiques à base de pétrole par des matériaux biosourcés. En raison de leurs origines naturelles, d'une résistance relativement élevée et de leur capacité à former des produits transparents, les nanofibres de cellulose possèdent un grand potentiel d'applications dans les matériaux composites. Dans ce travail des résultats ont été apportés premièrement sur l'optimisation des procédés de productions de nanofibres de cellulose par des traitements biochimiques et mécaniques, deuxièmement sur leurs propriétés rhéologiques et structurelles en milieu aqueux et troisièmement sur la production de composites à matrice de latex. Les questions de dispersions homogènes de nanofibres de cellulose dans la matrice et des interactions entre ces composants à des fins de renforcement des bio-composites ont été étudiés en détails. / One of the main challenges in the context of biocomposites development is to replace petroleum-based materials with bio-based. Because of their natural origin, relatively high strength and the ability to form transparent products, cellulose nanofibers have a large potential for application in the composite materials. This work was focused primarily on the optimization of cellulose nanofiber production methods using biochemical and mechanical treatments, secondly on their rheological and structural properties in an aqueous medium and thirdly on the production of latex-based composites. The questions of homogeneous dispersion of cellulose nanofibers in the matrix and the interactions between these components for the purpose of matrix reinforcement are particularly addressed.

Les génomes eucaryotes sont très complexes et peuvent être très grands. Par exemple, le génome humain contient environ de 20 000 à 25 000 gènes codant pour des protéines. L'expression de ces gènes doit être strictement régulée à de nombreux niveaux (tels que l'organisation de la chromatine, la transcription des gènes, le traitement et l'exportation de l'ARN messager ainsi que la traduction) pour le bon fonctionnement de la machinerie cellulaire. De nombreuses protéines et complexes protéiques sont impliqués dans ces processus essentiels de régulation, tels que les remodeleurs de la chromatine, les activateurs, co-activateurs et répresseurs de la transcription et particulièrement la machinerie générale de transcription. Chez les eucaryotes, la transcription de gènes codant pour des protéines est appelée transcription génique de classe II, elle est catalysée par l'ARN polymérase II (Pol II). La transcription des gènes par la polymérase II nécessite l'interaction coopérative de plusieurs protéines et complexes protéiques afin de faciliter l'assemblage d'un complexe de pré-initiation (PIC) au promoteur de base. Le complexe de pré-initiation comprend l'ARN polymérase II et les facteurs de transcription généraux (GTFs) - TFIIA, TFIIB, TFIID, TFIIE, TFIIF et TFIIH ainsi que le complexe de Médiateur et une grande variété de co-activateurs transcriptionnels.Une étape fondamentale dans l'assemblage d'un complexe de pré-initiation est la reconnaissance du promoteur de base par le facteur de transcription général TFIID. TFIID est un complexe multi protéique d'environ 1,6 MDa. Chez l'homme, il comprend une vingtaine de sous-unités constituées de 14 protéines différentes - la protéine de liaison à la boite tata (TBP) et ses facteurs associés (TAFs 1 à 13). Une série d'études sur la TFIID humaine et ses sous-ensembles ont été réalisés depuis sa découverte il y a plus de 20 ans, cherchant à comprendre la structure et le mécanisme de ces facteurs de transcription général essentiel, cependant l'architecture de TFIID, ses activités, ses fonctions, ses rouages et ses mécanismes d'assemblage cellulaire reste largement incompris à ce jour.Cette thèse décrit les études biochimiques que nous avons effectuées sur trois sous-ensembles distincts de TFIID humain. Nous avons utilisé un certain nombre de techniques de biologie structurale : la cristallographie, la spectroscopie à résonance magnétique nucléaire (RMN) et la diffusion des rayons X aux petits angles (SAXs), pour étudier le complexe formé par les facteurs humains, associés à la protéine de liaison à la boite tata, TAF1 et TAF7. Ces études structurelles fournissent un aperçu détaillé sur l'interface d'interaction complexe de TAF1/TAF7, misent de concert avec des données disponibles dans la littérature, elles mettent en évidence la nature dynamique de l'interaction TAF1/TAF7 dans le complexe de TFIID humain.Dans une deuxième étude, nous avons analysé un complexe formé par TAF11, TAF13 et TBP en utilisant un panel de méthodes biophysiques et biochimiques : l'analyse électrophorétique de retard sur gel (EMSA), l'ultracentrifugation analytique (AUC), la chromatographie d'exclusion stérique (SEC) analyse, le pull-down, la spectrométrie de masse native et la spectrométrie de masse chimique à réticulation (CLMS). Ce complexe fait penser au complexe TAF1/TBP qui imite la boite tata.De plus, dans le cadre des efforts en cours au sein du laboratoire du Pr Imre Berger afin de déterminer la structure de l'holo-TFIID humaine, nous avons reconstitué un grand sous-ensemble de TFIID (900 KDa) appelé 9TAF, qui est composé de neuf différents facteurs associés de TBP. Nous avons effectué des études d'électro-microscopie par coloration négative sur le complexe 9TAF qui nous ont fourni des informations à faible résolution. Ces études ouvrent la voie à de futures études de cryo-EM sur le complexe 9TAF pour obtenir un modèle de plus haute resolution. / Eukaryotic genomes are highly complex and can be very large. For example, the human genome contains approximately 20,000-25,000 protein coding genes. Expression of these genes needs to be tightly regulated at many levels, including chromatin organization, gene transcription, mRNA processing and export and translation, for proper functioning of cellular machinery. Many proteins and protein complexes are involved in these essential regulatory processes, examples include chromatin remodelers, transcriptional activators and coactivators, transcriptional repressors and notably the general transcription machinery. Transcription of protein coding genes in eukaryotes is called Class II gene transcription, and is catalyzed by RNA polymerase II (Pol II). Gene transcription by Pol II requires the cooperative interaction of multiple proteins and protein complexes to facilitate the assembly of a preinitiation complex (PIC) at the core promoter. The PIC comprises Pol II and the General Transcription Factors (GTFs)- TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIIH, together with the Mediator complex and a large variety of transcriptional coactivators.A fundamental step in PIC assembly is recognition of the core promoter by GTF TFIID, a magdalton sized multiprotein complex. In humans, TFIID comprises about twenty subunits made up of 14 different proteins – the TATA box binding protein (TBP) and its associated factors (TAFs, numbered 1 to 13). A range of studies on human TFIID and its subassemblies have been carried out since its discovery more than two decades ago, to understand the structure and mechanism of this essential GTF, but the architecture of TFIID, its activities, its functions, its inner workings and the mechanisms of its cellular assembly have eluded detailed understanding to date.This thesis describes biochemical, biophysical, structural and functional studies carried out on three distinct human TFIID subassemblies. We used a number of structural biology techniques, including crystallization, nuclear magnetic resonance (NMR) spectroscopy and small angle X-ray scattering (SAXS) to analyse a complex formed by the human TBP associated factors TAF1 and TAF7. These structural studies provide detailed insights into the intricate interaction interface formed by TAF1 and TAF7, and, together with other data available from the literature, highlight the dynamic nature of the TAF1/TAF7 interaction in the human TFIID complex.In a second study, we analyzed a novel complex formed by TAF11, TAF13 and TBP using a range of biophysical and biochemical methods including electrophoretic mobility shift assay (EMSA), analytical ultracentrifugation (AUC), size exclusion chromatography (SEC) analysis, pull-down assay, native mass-spectroscopy and chemical cross-linking mass spectroscopy (CLMS). This complex is reminiscent of a so-called TATA-box mimicry discovered previously in a TAF1/TBP complex.As part of the ongoing efforts in the Berger laboratory to determine the structure of human holo-TFIID, we furthermore produced and purified a large (~900 kDa) TFIID subassembly called 9TAF, which is composed of nine different TBP associated factors. We carried out negative stain EM studies and random conical tilt (RCT) analysis on 9TAF to obtain low resolution structural information. These studies set the stage for future cryo-EM studies of this 9TAF complex to obtain a high(er) resolution model to decipher the inner workings of human TFIID.

Made available in DSpace on 2014-12-02T11:16:33Z (GMT). No. of bitstreams: 0 Previous issue date: 2012-06-27Bitstream added on 2014-12-02T11:21:14Z : No. of bitstreams: 1 000693706.pdf: 2880957 bytes, checksum: 43d4b15dffaa346d602b5f57917996d4 (MD5) / Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES) / Amplamente utilizado no tratamento de vários tipos de câncer e na psoríase, o metotrexato (MTX) é um quimioterápico, estruturalmente análogo do ácido fólico, que apesar de sua eficácia apresenta uma série de efeitos adversos, sendo a hepatotoxicidade o mais grave. Atualmente os sistemas nanoestruturados líquido-cristalinos de fase lamelar estão sendo utilizados como dispositivos para liberação modificada de fármacos, sendo vantajosos na liberação tópica de várias substâncias, conforme suas características de interação com o estrato córneo e as outras camadas da pele, evitando assim efeitos adversos sistêmicos. Os objetivos deste trabalho foram desenvolver sistemas nanoestruturados líquido-cristalinos de fase lamelar, acrescidos de MTX, caracteriza-los do ponto de vista físico, realizar a análise estrutural das formulações, através de microscopia de luz polarizada (MLP), espalhamento de raios-X a baixo ângulo (SAXS) e suas propriedades reológicas, executar os testes de estabilidade preliminar (TEP) das formulações, validar o método analítico para a quantificação de MTX por CLAE e executar ensaios de liberação, permeação e retenção in vitro. As formulações preparadas a partir da mistura do poliéter funcional siloxano (Dow Corning® 5329) como tensoativo, com silicone fluido de co-polímero glicol (Dow Corning® 193C) como fase oleosa titulados em fase aquosa, composta por tampão fosfato de potássio monobásico 0,01M pH 7,4, apresentaram fases líquido-cristalinas do tipo lamelar, confirmados pelos ensaios de MLP e SAXS. Os TEPs evidenciaram que as formulações A, B e C mantiveram-se estáveis durante o período do estudo. Os estudos do comportamento reológico das formulações apresentaram-se como fluidos pseudoplásticos não–newtonianos tixotrópicos ... / Widely used in the treatment of some types of cancer, the methotrexate (MTX) is a chemotherapeutic, structurally analog of the folic acid, although its effectiveness, presents a series of adverse effect, being the most serious hepatotoxicity. Currently, the liquid crystal lamellar phase is being used of devices for modified release of drug demonstrated to be advantageous in the release topic of some substances, given to the characteristics of interaction with the stratum corneun and other layers of the skin, avoiding systemic adverse effects. The aims of this research had been to develop and to characterize liquid crystalline nanostructure systems of lamellar phase, increased of MTX of the physical point of view, also carry through the structural analysis of the formulations through by polarized light microscopy (PLM), small-angle X-ray scattering (SAXS) and rheological properties. Perform stability studies of the chosen formulations, validate the analytical method of quantification of MTX for High Performance Liquid Chromatography (HPLC) and carry through release assay, cutaneous permeation and skin retention in vitro for the chosen formulations. The formulations prepared by the mixture of polyether functional siloxane as surfactant, with silicone polyether copolymer as oily phase and phosphate buffer 0,01M pH 7,4 as aqueous phase demonstrating lamellar liquid-crystalline phases, confirmed by assays of PLM and SAXS. The stability studies showed that formulations A, B and C remained stable throughout the period of the study. The study of the rheological behavior of the formulations presented as not Newtonian pseudoplastic fluid and thixotropic ...

Les protéines régulatrices de la transcription de type LysR (LTTR) appartient à la plus grande famille de facteur de transcription chez les procaryotes. Malgré l'importance de cette famille, les informations structurelles sur les protéines pleine-longueur sont très limitées car elles sont souvent insolubles et très difficiles à cristalliser. Les quelques structures existantes, couplés à d'autres analyses biophysiques ont pu montrer que ces protéines s'associent principalement sous forme d'homotétramère comprenant un dimère de dimères. Les dimères s'associent par un large domaine C-terminal dans une position " tête-bêche " et sont reliés en " tête-à-tête " par leurs domaines N-terminal et sont activées par la liaison de molécules inductrices. Le domaine dimèrique C-terminal qui contient la poche de liaison inductrice (Inducer Binding Cavity : IBC) est appelé domaine de liaison inductrice (Inducer Binding Domain : IBD), tandis que les dimères N-terminaux se lient chacun à une région de l'ADN par un motif hélice-tour-hélice ‘winged' (wHTH). Contrairement à d'autres facteurs de transcription, les protéines LTTR ne régulent pas l'expression par association/dissociation avec l'ADN. Ils se lient à l'ADN dans leur état actif et inactif. Le consensus actuel est qu'elles régulent l'expression des gènes par d'importants changements conformationnels qui relâchent la liaison avec l'ADN. À ce jour, aucune structure de LTTR pleine longueur homotétramérique dans une conformation active ou inactive n'a été résolu par cristallographie, et leur mécanisme d'action sur le gène reste structurellement non caractérisé.Le travail décrit dans cette thèse a utilisé DntR de la famille des LTTR. La première structure cristalline de l'apo-DntRis est présentée ici, ainsi que la structure du mutant H169TDntR, qui présente une activité en l'absence d'inducteur. L'analyse par fluorimétrie de différentiel thermique (TSA) montre que la température de dénaturation du mutant H169TDntR est similaire à DntR IBDs lié à une molécule inductrice. La comparaison de ces deux structures avec celle de DntR lié au salicylate révèle que la protéine dans son état apo adopte une conformation compacte de l'IBC, ce qui empêche la liaison d'une molécule inductrice. Dans l'IBC, les mouvements des résidus H169 et H206 permettent la liaison à l'inducteur. Pour éviter les limitations dues à l'empaquetage du cristal nous avons étudié la structure DntR en solution par diffusion des rayons X aux petits angles (SAXS).L'étude SAXS de DntR révèle que dans son état inactif, la conformation apo adopte un repliement plus compact par rapport à celle de la structure cristalline. Tout en maintenant un noyau compact de C-terminal, le repliement du dimère de wHTH est beaucoup plus fermé que dans la structure cristalline et adopte une conformation qui entrainerait une flexion beaucoup plus importante de l'ADN lié que postulé précédemment. Les études du mutant H169TDntR constitué actif ont confirmé comme l'analyse par TSA l'a suggéré que, la structure de cette protéine est nettement différente en solution que sous forme cristalline.En effet, la structure en solution de H169TDntR est très semblable à la forme ouverte de l'homotétramères observés dans la structure cristalline de TsaR. L'hypothèse de départ était que, lors de l'activation de LTTR, cet homotétramère subirait un changement de conformation d'une forme compact vers une forme ouverte, qui se traduirait par un relâchement de l'ADN lié. Cette hypothèse a été confirmée par des études de diffusion en solution de DntR activée par un inducteur.Le travail présenté dans cette thèse valide l'hypothèse précédemment, que lors de l'activation de DntR, et probablement tous les LTTRs homotétramériques, entraine un changement de conformation d'une forme compacte vers une forme beaucoup plus ouverte et permet l'accès aux régions promotrices par l'ARN polymerase et ainsi initier la transcription. / LysR type transcriptional regulatory (LTTR) proteins are the largest family of transcription factors amongst prokaryotes. In spite of the size of the family, structural information on full-length constructs of these proteins is very limited as they are often insoluble and very difficult to crystallize. From the few existing crystal structures, coupled with other biophysical evidence, it is known that the proteins mainly associate as homotetramers comprising a dimer of dimers. The dimers associate through large C-terminal domains in a “head-to-tail” fashion and are connected “head-to-head” through their N-terminal domains and the resulting homotetramers are activated by the binding of inducer molecules. Each C-terminal domain contain an inducer binding cavity (IBC) and is denoted an inducer binding domain (IBD), while the N-terminal dimers each bind a region of DNA via a winged helix-turn-helix (wHTH) motif.Unlike other transcription factors, LTTR proteins do not regulate expression by associating or disassociating with DNA. They bind to DNA in both their active and inactive states and the current consensus is that they regulate gene expression through large conformational changes that relax the bending of bound DNA. However, to this date, no crystal structures of a full length homotetrameric LTTR in both an active and inactive conformation exists, and thus their mechanism of transcriptional regulation remains structurally uncharacterized.The work described in this thesis has used the LTTR DntR as a model protein to futher structurally characterizes the activation mechanism of LTTR proteins. The first crystal structure of apo-DntR is presented as is the crystal structure of H169TDntR, a mutant which shows activity in the absence of an inducer molecule. Thermofluor assays performed on this mutant, show that it has a melting temperature similar to that of inducer bound DntR. Comparison of these crystal structures with the crystal structure of salicylate-bound DntR reveals that the protein in its apo-state adopts a compact IBC, which precludes the binding of an inducer molecule. Despite the evidence of thermofluor assays, the crystal structure of H169TDntR is very similar to that of apo-DntR suggesting that crystal packing effects impose strong limitations on the use of crystallography to elucidate the active and inactive conformations of DntR. Small Angle X-ray Scattering (SAXS) was thus used to study the structure of DntR in solution.SAXS study reveals that in solution DntR in its inactive apo-state is found in a slightly different conformation compared to that seen in its crystal structure. While maintaining a compact tetrameric C-terminal core the DNA binding wHTH dimers pack much closer to this than seen in the crystal structure and adopt a conformation that would result in much higher bending of bound DNA than previously postulated.SAXS studies of the constitutively active H169TDntR mutant confirm, as thermofluor assays had suggested, that in solution the structure of this protein is markedly different from its crystal structure. Indeed the solution structure of H169TDntR appears very like that of open-form homotetramers seen in the crystal structure of TsaR. This same effect was observed in solution scattering studies of inducer bound-and thus activated, DntR.The work presented in this thesis thus appears to confirm, as previously hypothesized, that upon activation DntR, and presumably all homotetrameric LTTRs, undergo a conformational change from a compact, to a much more open form that allows the relaxation of the bound DNA promoter region, exposing it to solvent and allows RNA polymerase access and thus initiate transcription.

Les liquides ioniques et le graphène sont intensivement étudiés, respectivement en tant qu’électrolyte et électrode, pour le développement des supercondensateurs. Dans ce cadre, il est primordial de caractériser l’interface entre les deux espèces. Pour ce faire, nous avons réalisé ce type d’interface par la procédure des films de Langmuir que nous avons observés à différentes échelles via des mesures d’isothermes, de microscopies à angle de Brewster et à force atomique ainsi que par diffusion des rayons X de surface. Nous avons étudié des films formés par des liquides ioniques, de l’oxyde de graphène et enfin d’un mélange de ces deux espèces. L’étude sur les liquides ioniques purs montre que le cation joue un rôle non négligeable sur l’organisation des films à l’interface air-eau, aussi bien en monocouche que lors du passage en phase tridimensionnelle. Par ailleurs, nous avons montré que les films d’oxyde de graphène forment spontanément une bicouche de feuillets à l’interface eau-air même pour de faibles densités superficielles. Enfin concernant les films mixtes, nous avons observé une ségrégation verticale des espèces quand la pression de surface devient suffisamment élevée. Le film est alors composé d’une première couche en contact avec l'eau, majoritairement composée de feuillets d’oxyde de graphène parallèles à l’interface, sur laquelle se superpose une seconde couche formée des domaines de liquide ionique désorganisé. / Graphene and ionic liquids are intensively studied, respectively as electrolyte and as electrode materials, for the development of supercapacitors. In this framework, the characterization between the two species is essential. We realized such kind of interfaces through the Langmuir film procedure and characterized them at different scales, using isotherm measurements, Brewster Angle and Atomic Force Microscopies, and surface X-ray scattering. We studied films formed by different ionic liquids, by graphene oxide and finally by a mixture of the two species. The study on the pure ionic liquids evidences the role of the cation on the film organization at the air-water interface, for the monolayer as well as for the tridimensional phase. Moreover, we showed that the graphene oxide films are composed of a bilayer of sheets à the interface, even at low surface densities. Finally, regarding the mixed film, we observed a vertical segregation of the species for high enough surface pressures. The film is formed by a first layer in contact with the water surface, mostly composed of graphene oxide sheets parallel to the interface, on which a second layer is superimposed, composed of disorganized ionic liquid domains.

Estudos sistemáticos utilizando a técnica de SAXS foram realizados no síncrotom do LURE (Orsay) com feixe intenso de geometria pontua:, para descrever a cinética e as estruturas obtidas durante as etapas de transformação sol -> gel úmido -> gel seco -> vidros de sílica . As análises foram feitas em termos de uma lei de potência I = q-? cujo expoente está relacionado a dimensão fractal de massa ou de superfície das estruturas. Devido a polidispersividade das unidades espalhadoras as dimensões fractais verificadas podem ser resultados de dimensões reais encobertas por uma distribuição de tamanhos. As curvas obtidas para a cinética de gelificação e envelhecimento dos géis úmidos mostram expoentes que indicam fractalidade de massa e, posteriormente, de superfície. Uma microestrutura composta, que pode resultar de uma agregação limitada por difusão (DLA) seguido de agregação de agregados (C-C) foi observado nas soluções básicas. Por outro lado, os agregados ácidos parecem surgir do crescimento contínuo de cadeias até atingir a interligação com outros agregados com uma cinética que pode ser descrita pelo modelo DLA. No estado de aerogeis outras técnicas como picnometria de mercúrio e hélio, microscopia eletrônica de transmissão e adsorção de gás de nitrogênio, foram também aproveitadas. Nestes materiais encontramos em uma faixa estreita de escala, um expoente indicando fractalidade de massa, embora com superfície lisa. Os resultados estão de acordo com um modelo de estrutura que tem uma matriz de SiO2 densa. A estrutura fractal desaparece durante o tratamento térmico de densificação devido ao rearranjo estrutural. / Systematic SAXS studies have been performed at the LURE synchrotron (Orsay) using an intense beam of point-like cross-section to describe the kinetic and the structure obtained during the sol-> humid gel -> dry gel ->silica glass. The analysis were done in terms of a power law, I = q-? , whose exponent is related to mass and surface fractal dimensions of the structures. Due to polidispersity of the scattering units the found fractal dimensions can be \"smeared\" dimensions that result from a size distribution. All the kinetic and aging humids curves showed evidenced of fractal structures. A composed microstructure that can be originated by clustering of clusters (C-C) of primary units grown by diffusion limited-aggregation (DLA), was observed for basic gels. By other hand, the acidic cluster seems to grow continuously reaching gelation through crosslinking of the clusters. The DLA model seems to describe this process. In the aerogels study others techniques like density measurements using Hg and He, TEM and adsorption of N2 gas were done along with SAXS measurements. Here we could find a narrow range in which the system is a mass fractal, although its surface has been already smoothened. The results agree with a dense SiO2 matrix model. During the densification no fractal structure was verified due to structural rearrangements at high temperature.

Movimentos coletivos prestam um papel fundamental na dinâmica e energética de biomoléculas em solução. Estes movimentos permitem o acoplamento de regiões significativamente distantes, apresentando considerável influência, por exemplo, no alosterismo para a formação de complexos macromoleculares e no funcionamento integrado de proteínas multidomínios como \"máquinas moleculares\". Neste trabalho de doutoramento, serão apresentados os resultados referentes à aplicação conjunta de técnicas experimentais biofísicas, de modelagem estrutural e de dinâmica molecular no estudo de dois sistemas para os quais estes movimentos coletivos demonstram considerável importância funcional. Para a interação do receptor nuclear do ácido 9-cis-retinóico com seu elemento responsivo específico no DNA (HRE), a comparação de estudos de dinâmica molecular com ensaios de afinidade por anisotropia de fluorescência sugere que a resistência inicial para a associação do monômero, seguida da acentuada colaboratividade na associação do dímero é regida por um impedimento da associação do domínio de ligação ao DNA (DBD) para o primeiro à sequência responsiva devido, em última análise, a uma não complementaridade dos modos coletivos mútuos. Este impedimento para a associação monomérica inicial é mais acentuado para o monômero 5\' (para o qual a menor especificidade de ligação à seqüência específica já é bem documentada), devido aos efeitos conjuntos de um \"defeito\" natural no empacotamento de bases da seqüência responsiva, que se manifesta mais significativamente na interface entre o meio-sítio 5\' e a seqüência espaçadora, e dos modos vibracionais entre os dois sítios decorrentes de seu faseamento relativo na topologia do DNA na seqüência responsiva, caracterizando um mecanismo \"chave e fechadura\" para a interação obrigatoriamente simultânea dos dois monômeros ao DNA. No segundo caso, um estudo integrado utilizando a técnica experimental de espalhamento de raios X a baixos ângulos e uma abordagem de modelagem estrutural baseada em dinâmica molecular foi realizado para a celobiohidrolase I de Trichoderma harziannum. Este estudo permitiu tanto a elaboração de um modelo estrutural de maior resolução para esta enzima de alto potencial biotecnológico como a constatação dos possíveis mecanismos moleculares a partir dos quais as glicosilações no peptídeo conector impõem restrições à orientação e modos vibracionais entre seus dois domínios de forma condizente com sua ação concertada na interação e no deslize da enzima sobre a superfície celulósica, ambos de fundamental importância para a processividade da enzima na hidrólise do substrato microcristalino. / Collective motions play a fundamental role in solution biomolecule dynamics and energetics. These movements can couple very distant regions in the protein structures affection, for instance, allosteric mechanisms, the establishment of macromolecular complexes, and on the integrated function of multidomain proteins as molecullar machines. In this thesis, we present results concerning to the joint use of experimental biophysical techniques, structural modeling and molecular dynamics simulations on the study of two systems for which these collective motions have substantial importance. First, we study the interaction of the nuclear retinoid X receptor with its specific DNA hormone response element (HRE) using a combination of molecular dynamics simulations and affinity assays performed by using fluorescence anisotropy. We find out that collective motions mediate the low binding affinity of monomers and the high cooperative binding of HRE dimers. The lower binding affinity of the monomer is more prominent for 5´ monomers. This occur due to an natural ineffective stacking of the last base pair step at the 5´-half-site and to the phasing of the two binding half-sites in the DNA topology, that impose a collective motions that tends to occlude the 5´ binding site. This behavior, in turn, is concurrent with the well known 3´ polarity and the decreased binding specificity to the 5´ half site for the hRXRα monomer. This same pattern impose a lock-and-key mechanisms dependent on the binding of the full dimer. Second, an integrated Small angle X ray scattering and molecular dynamics based structural modeling was used to comprehend the interdomain motions of cellobiohydrolase I of Trichoderma harziannum. We manage to build a refined model for this enzime, with important biotechnological potential. We also provide insights into molecular mechanisms of linker and glycosylation imposed restraints on the orientation and vibrational modes of the full-length enzyme, supporting a mechanism of sliding of on the cellulose surface. This mechanism is fundamental for the high processivity on the hydrolysis of microcrystalline cellulose.

This thesis deals with the preparation, characterization methods and in vitro imaging of nanoparticles with great potential for medical diagnostics. A key role in this work occupy nanoparticles comprising a core of calcium tungstate, CaWO4, covered by a natural polysaccharide together serve as a suitable model contrast agent for cell imaging techniques. CaWO4 natural properties such as the absorption of X-rays, natural fluorescence capabilities and capacities for doping fluorescently active lanthanides, makes from nanoparticles suitable candidates for the position of contrast agents for imaging in the diagnosis of oncological diseases. Moreover, by coverage of the inorganic core by natural polysaccharide nanoparticles reach the desired size and the possibility of active targeting to specific or nonspecific interactions with the cell membrane, which are key factors in in vitro cell studies. It was found the most suitable synthesis both doped and undoped core of this model reaching the formation of spherical particles of colloidal dimensions. Doping was realized by red fluorescent trivalent europium, Eu3+ , and green fluorescent trivalent terbium, Tb3+ , and neither of these dopants affected the original crystalline structure CaWO4. In the next stage, these fluorescent nuclei successfully dispersed...

Les copolymères diblocs amphiphiles poly(oxyde d’éthylène)-b-poly(acrylate de méthacryloyloxyéthyle) s’autoassocient dans l’eau pour former des micelles, tout en conservant un échange d’unimères. Dans les suspensions denses, leur coincement conduit à une transition liquide-solide. Dans l’état solide, elles peuvent s’ordonner et un état cristallin apparait. Si l’échange d’unimères est supprimé, les micelles ne sont plus dynamiques et se comportent comme des étoiles, qui montrent un comportement similaire mais avec des différences sur les propriétés rhéologiques et structurales. L’une des méthodes permettant de créer des étoiles est de photo-réticuler le coeur des micelles. L’objectif de cette thèse à été d’analyser l’influence de l’échange d’unimères sur la transition liquide-solide et la cristallisation. Les copolymères ont été synthétisés par une nouvelle technique de polymérisation radicalaire contrôlée, la Single-Electron Transfer-Living Radical Polymerization (SET-LRP). Par diffusion de la lumière, il a été montré que le nombre de bras des étoiles pouvait être contrôlé par la concentration à laquelle les micelles étaient réticulées. Nous avons montré par rhéologie quel’absence d’échange de bras facilitait la transition liquide-solide. Les étoiles présentent la même transition liquide-solide que les micelles, à condition que le nombre de bras des étoiles atteigne une valeur critique. La cristallisation a été étudiée par diffusion des rayons-X. La dynamique d’échange n’a pas d’influence directe sur la cristallisation. La cristallisation et la transition liquide-solide sont facilitées par l’auto-adaptation du nombre de bras, permise par l’échange dynamique. / Amphiphilic poly(ethylene oxide)–b– poly(methacryloyloxyethyl acrylate) POE-b-PAME diblock copolymers self–assemble in water to form polymeric micelles which exhibit dynamic exchange of unimers. Dense suspensions of micelles jam leading to a liquid-solid transition. In the solid state, micelles can organize in a crystalline network. If the exchange of unimers between micelles is suppressed, they become no longer dynamic and behave like star polymers. The latter show similar general behavior but with differences in the rheology and the structure. One way to create star polymers from polymeric micelles is to crosslink the hydrophobic core. In this study, we investigate the influence of dynamic arm exchange on the liquid-solid transition and crystallization. Diblock copolymers have been synthesized by a new technique of controlled radical polymerization, the Single-Electron Transfer-Living Radical Polymerization (SET-LRP). Light scattering showed that the number of arms per stars could be controlled by the concentration at which micelles were cross-linked. We have shown by rheology that the absence of dynamic arm exchange facilitated the liquid-solid transition. The frozen stars have the same liquid-solid transition than that of dynamic stars, provided that the number of arms reaches a critical value. The crystallization was studied by X-ray scattering. Dynamic arm exchange has no direct influence on the crystallization. Crystallization and liquid-solid transition are facilitated by the self-adaptation of the number of arms permitted by the dynamic arm exchange.