Background Multiple sclerosis (MS) is an autoimmune disease characterised by inflammatory damage to the central nervous system (CNS). Accumulated CNS injury can be quantified as brain atrophy, definable as a reduction in brain parenchymal fraction (BPF). BPF correlate with disability in MS and is used routinely as an endpoint in clinical trials. In 2009/2010, a new MS clinical care program, that includes follow-up of BPF, was introduced at Umeå University Hospital (NUS). Levels of neurofilament light polypetide (NFL) and glial fibrillary acidic protein (GFAP) in cerebrospinal fluid (CSF) are markers of axonal and astrocytic injury, respectively, and also potential surrogate biomarkers for BPF decline. The goals of this thesis were to establish age-adjusted values of BPF in healthy individuals and to relate these to the BPF values from individuals with MS as well as to the levels of NFL and GFAP in CSF. Another goal was to investigate if expanded disability status scale (EDSS)-worsening could be predicted in a clinical MS cohort and if BPF measurements could contribute to such predictions. Methods A group of 111 healthy individuals volunteered to participate in the studies. A total of 106 of these underwent MRI with BPF measurements, 53 underwent lumbar puncture (LP) with measurement of NFL and GFAP and 48 underwent both MRI and LP. Three different automatic and one manual method were utilised to determine BPF. A literature search on BPF in healthy individuals was performed for the purpose of a systematic review. For studying disability progression in MS, all individuals with MS followed at NUS and included in the Swedish MS registry were included if they had matched data on BPF, EDSS and lesion load as part of clinical follow-up (n=278). Results BPF as well as NFL and GFAP levels in CSF were all associated with age. NFL was associated with BPF and GFAP, but only the association with GFAP was retained when adjusting for age. Significant differences were found between different methods for BPF determination. In the MS population, BPF was associated with EDSS. Only progressive disease course could predict EDSS worsening. Conclusion The data on BPF and levels of NFL and GFAP in CSF of healthy individuals can aid in the interpretation of these variables in the setting of MS. Knowledge on differences in BPF data from different methods for BPF determination can be useful in comparing data across studies, but also highlights the need for a commonly accepted gold standard. The correlation between GFAP and NFL levels in CSF may indicate an association between glial and axonal turnover that is independent of the aging effect on the brain. However, the low number of volunteers for LP precluded clear conclusions. An association between BPF and EDSS was seen in the MS group. The ability to predict EDSS worsening in the clinical MS cohort was limited.

This thesis was performed in the scope of International Graduation Program in which Universidade de São Paulo and The Ohio State University are inserted. In the first year of Ph.D. work we aimed to understand the effect of aluminum (Al) in root growth of Eucalyptus spp. and the relationship with biochemical parameters and transcriptional responses since there is little information about these responses for tree species. Aluminum is found naturally in the Earth crust, but under acidic conditions Al3+ ion becomes available and toxic to the plants. United States and Brazil possess large areas with Al toxicity and great area of forests growing under these conditions. In order to perform the transcriptional analysis, Eucalyptus RNA was transported to United States, however, the method of transportation was not efficient to guarantee RNA integrity. Therefore we changed our objectives and we performed new experiments using maize as biological system because this species has economical importance to U.S. and Brazil. Furthermore, substantial area of this crop is growing in soils under these conditions. In these experiments, we aimed to verify if pre-treating maize seeds before germination could be efficient to induce Al-tolerance in Al-sensitive genotypes. This thesis was organized in order to build a story based on the sequences of the experiments. In general, we obtained interesting results for Al-sensitive maize that presented reduction in lignin content and gene expression in shoots, also for Al-tolerant variety that present increase in growth, productivity and improvement of nutritional quality of the kernels. / Esta tese foi realizada no âmbito do Programa Internacional de Pós-Graduação em que a Universidade de São Paulo e The Ohio State University estão inseridos. No primeiro ano do trabalho de doutorado, o objetivo foi de compreender o efeito do alumínio (Al) no crescimento de raízes de Eucalyptus spp. e a relação com parâmetros bioquímicos e respostas de transcrição já que há pouca informação sobre estas respostas para espécies arbóreas. O alumínio é encontrado naturalmente na crosta terrestre, porém sob condições ácidas o íon Al3+ torna-se disponível e tóxico para as plantas. Os Estados Unidos e o Brasil possuem grandes áreas com Al tóxico e grandes áreas de florestas crescem sob estas condições. A fim de executar a análise transcricional, o RNA dos materiais de eucalipto foi transportado para os Estados Unidos, entretanto, o método de transporte não foi eficiente para garantir a integridade do RNA. Assim sendo, mudamos nossos objetivos e realizamos novos experimentos utilizando milho como sistema biológico, porque esta espécie tem importância econômica para os EUA e também para o Brasil. Ademais, substanciais áreas de cultivo do milho se encontram em solos sob estas condições. Nos novos experimentos realizados, o objetivo foi de verificar se o pré-tratamento de sementes de milho antes da germinação poderia ser eficiente para induzir tolerância ao alumínio em genótipos Al-sensíveis. Esta tese foi organizada a fim de construir uma história com base nas sequencias dos experimentos. Em geral, resultados interessantes foram obtidos para a linhagem de milho sensível ao Al que apresentou redução no teor de lignina e na sua expressão gênica em parte aérea, também para a variedade tolerante ao Al que apresentou aumento no crescimento, produtividade e melhoria da qualidade nutricional dos grãos.

A reprodução em peixes é controlada pelo eixo hipotálamo-hipófise-gônadas e os fatores que alteram o funcionamento adequado deste eixo são chamados de disruptores endócrinos. Muitos metais têm o papel de disruptores endócrinos e dentre eles destaca-se o alumínio que, além de afetar o sistema endócrino de algumas espécies de peixes, pode alterar a deposição e/ou mobilização de substratos energéticos nestes animais. Sabe-se que o pH pode modular em muitos casos as respostas fisiológicas decorrentes da exposição de peixes a alguns metais, como é o caso do alumínio. Desta forma, o presente trabalho objetiva avaliar as possíveis alterações na fisiologia reprodutiva de duas espécies de peixes teleósteos continentais quando os mesmos são expostos às altas concentrações de alumínio e em pH ácido. Para avaliar estes efeitos foram conduzidos 2 tipos de experimentos: um crônico, realizado com fêmeas de uma espécie de desova total (sincrônica em grupo), Astyanax fasciatus (lambari), durante a sua fase reprodutiva, pelo período de 14 dias; e outro agudo, pelo período de 96 horas, com fêmeas de Oreochromis niloticus (tilápia), espécie de desova parcelada (assincrônica) também em fase reprodutiva. Foram determinadas as concentrações plasmáticas de hormônios esteróides como o cortisol, o estradiol e a 17 α OHP utilizando-se kits de elisaimunoensaio; substratos energéticos, como proteínas e lipídios, no fígado, plasma e gônadas, assim como os principais íons plasmáticos (cálcio, potássio, cloro, magnésio e sódio) também foram analisados. Análises histológicas das gônadas, fígado e brânquias foram conduzidas com a finalidade de avaliar o efeito do alumínio e do pH ácido nestes tecidos. Os resultados do presente trabalho evidenciam que o alumínio e o pH ácido afetam a fisiologia reprodutiva de peixes teleósteos, mas o efeito deste metal está relacionado à estratégia reprodutiva dos animais. Os dados mostram que em peixes de desova total, como o lambari, os efeitos do alumínio são mais evidentes na fase de vitelogênese, alterando a ação dos estrógenos e os processos de mobilização de lipídios e proteínas em uma fase anterior à maturação final. Já na tilápia, os efeitos do alumínio e do pH ácido são mais evidentes na fase de maturação final e ovulação, uma vez que alterações foram observadas na concentração do progestágeno 17 α OHP, precursor do MIS em peixes teleósteos. / Fish reproduction is controlled by the hypothalamic-pituitary-gonad axis and factors that alter the normal function of this axis are known as endocrine disrupters. Many metals act as endocrine disrupters, including aluminium, a metal that affects endocrine and metabolic parameters in fish. It is also known that the pH can alter the endocrine disruptor effect of metals such as aluminium in fish. Considering that, this work aims to analyze the alterations in the reproductive physiology of two freshwater teleosts exposed to high aluminium concentrations in an acidic pH environment. To evaluate these effects, two experiments were conducted: the first experiment was designed to evaluate chronic effects by using mature Astyanax fasciatus females, a group synchronic species over a 14 day period; the second experiment was aimed to assess acute effects over a 96 hour period using Oreochromis niloticus mature females, an asynchronous species. The plasma profile of the steroids hormones, cortisol, estradiol and 17 α OHP were analyzed using EIA (Enzyme Linked Immuno Sorbent Assay) kits. Metabolic substrates as protein and lipids were analyzed in liver, gonads and plasma and the main plasmatic ions (potassium, sodium, chloride, magnesium and calcium) were also determined. Histological analyses were performed in liver, gonads and gills to evaluate the influence of aluminium on these organs. The results showed that aluminium as well as the acidic pH affects the reproductive physiology of the analyzed species, but the effects were different, according to the reproductive strategy of the respective species. Group synchronic species suffer from the aluminium effects in vitellogenic events, such as estradiol, lipid and protein concentrations in a period prior to final maturation. In contrast, the effects of aluminium and pH in tilapia were more evident in final maturation/ovulation processes than in vitellogenesis, as a result of alteration in the 17 α OHP concentration, the MIS (maturation induction steroid) precursor in teleosts.

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior / O uso de primers autocondicionantes tem sido proposto como uma alternativa para a redução de passos clínicos. O objetivo deste estudo clínico aleatório e controlado foi avaliar a performance de um sistema autocondicionante (Transbond Plus Self-Etching Primer, 3M Unitek - SEP) comparado a um sistema multipasso convencional (Transbond XT, 3M Unitek - TBXT) de colagem ortodôntica, durante um período de 12 meses. Vinte e oito pacientes participaram deste estudo, sendo estes alocados aos grupos SEP ou TBXT de forma aleatória, através de randomização em bloco. Um total de 548 bráquetes metálicos (Micro-Arch, prescrição Alexander, GAC International, Bohemia, NY) foram colados com uso da pasta adesiva Transbond XT (3M Unitek), sendo todos os produtos manuseados de acordo com as recomendações dos fabricantes. Foram totalizados 276 bráquetes no grupo controle e 272 no segundo. Curvas de sobrevivência Kaplan-Meier e o teste log-rank (p<0,05) foram utilizados para comparar o percentual de falhas adesivas para as duas técnicas. Ao final do período foram verificadas trinta e duas falhas adesivas (bráquetes descolados), sendo 19 (6,98%) falhas quando utilizado o primer autocondicionante (SEP) e 13 (4,71%) quando usado o primer convencional (TBXT). Não houve diferença significante entre a sobrevivência dos bráquetes entre os dois grupos avaliados (log-rank test, p=0,311). Quando a influência de gênero do paciente, arco dentário e tipo dentário (anterior ou posterior) foram analisados, somente o tipo dentário foi achado significante. Bráquetes de dentes posteriores apresentaram uma maior probabilidade de falha adesiva que os colados em dentes anteriores (p=0,013) Os autores concluem que o primer autocondicionante pode ser utilizado para colagem direta de bráquetes ortodônticos sem que sua sobrevivência clínica seja afetada. / The use of self-etching primers is presented as an alternative to shorten the clinical bonding steps. The purpose of this clinical trial was to evaluate over a 12-month period the performance of a self-etching system (Transbond Plus SEP, 3M Unitek - SEP) compared with a conventional multi-step system (Transbond XT, 3M Unitek - TBXT). Twenty-eight randomly selected patients were included in this study, each being randomly assigned to TBXT or SEP group. A total of 548 brackets were bonded following the manufacturers instructions, using Transbond XT adhesive paste. The survival rate of brackets were estimated with Kaplan-Meier analysis. Bracket survival distributions with respect to bonding procedure, tooth location, dental arch and patient gender were compared with log-rank test. The failure rates of the TBXT and SEP group were 4.71 and 6.98 per cent respectively. No significant differences in the survival rate were observed between the bonding procedures (p=0.311). When the tooth location, dental arch and patient gender were analysed, only the tooth location was found to be significant. Posterior brackets were more likely to fail than the anterior brackets (p=0.013). Both systems had low bonding failure rates and can be considered adequate for orthodontic bonding needs.

Electrostatics plays a crucial role in the membrane biology. Negatively charged lipids (such as PS, PA and PIP2) are subject to redistribution under the action of electrostatic forces during various signalling events. Membrane recruitment of multiple signalling proteins (such as MARCKS or Src kinase) is often maintained by positively charged polybasic domains (PD). Even though adsorption of these proteins to the cellular membrane has been extensively investigated, very little is known about how electrostatic interactions contribute to their membrane lateral dynamics. This thesis presents an investigation of the contribution of electrostatic interactions to the membrane lateral dynamics by means of novel computational tools. First, I developed a dynamic Monte-Carlo automaton that faithfully simulates lateral diffusion of the adsorbed positively charged PD of a peripheral membrane protein, as well as the dynamics of mono- (PS, PA) and polyvalent (PIP2) anionic lipids within the bilayer. This model allowed to investigate the major characteristics of protein-membrane diffusion on the uniform membrane. In agreement with earlier results, the simulations revealed the following microscopic phenomena: 1) Electrostatic lipid demixing in the vicinity of the PD; 2) PD interacts with PIP2 stronger than with monovalent lipids. On the spatially heterogeneous membrane the automaton predicted a directional drift of the PD, which was validated by a simple mean-field analytical model. The predicted phenomenon could potentially play a major role in membrane domain formation. To test this hypothesis and to investigate the membrane dynamics on larger scales I developed a continuous model, which was based on the results of the automaton simulations. The results of the continuous model and the Monte-Carlo simulations were shown to be in quantitative agreement. The continuous model allows one to simulate the electrostatic membrane dynamics on micrometer scales and can be used to describe various biologically important processes, such as endocytic cup initiation.

Phytoremediation is an innovative technology employing plants for reclamation of soils that have been polluted by industrial contaminants. While it is frequently slower than traditional physicochemical remediation techniques, there are, however, many significant advantages including simplicity, low cost, improvement of soil structure and microbiological fertility. While various hyperaccumulators have been reported from Europe and the USA, there is a need to identify Australian species. This study reports a number of metal accumulators following a soil and vegetation survey of two metal contaminated sites in New South Wales, the spoil (filtercake) heaps of the BHP (Broken Hill Propriety ) steelworks at Port Kembla and the abandoned mine at Sunny Corner. BHP is the largest manufacturer of steel in Australia. The Port Kembla is the largest single steel manufacturing site. Solid by-products from this site totalled 3.1 million tons in 1988. The Sunny Corner mine site was mainly a silver mine which operated over approximately 100 hectares 1184 to 1922 and produced over 100 tonnes of silver during that period. The soil and water in and around the site is heavily contaminated with metals and is distinctly acidic. It was concluded that Ricinus communis, Sonchus oleraceus, baeckea utilis, Poa labillardieri and Pinus radiata are options for heavy metal phytoremediation of contaminated Australian soils. Arbuscular Mycorrhizal infection (particular with Glomus and Gigaspora strains) should be promoted for optimum growth. / Doctor of Philosophy (PhD)

Natural bone is a composite of collagen based hydrogel and inorganic dahilite crystals. The unusual combination of a hard inorganic material and an underlying elastic hydrogel network endows native bone with unique mechanical properties, such as low stiffness, resistance to tensile and compressive forces and high fracture toughness. Throughout the cavities of the bone, there are bone cells and myriads of soluble and extracellular matrix components that are constantly involved in the bone formation and remodeling process. Among the extra cellular component the acidic matrix proteins that are attached to the collagen scaffold play important templating and inhibitory roles during the mineralization process. It would be interesting to generate such functional scaffolds that mimic a template driven mineralization and which can assist cell adhesion, proliferation, migration and differentiation. Towards this direction, we have chosen one synthetic (Nylon 66 membrane) and one natural (eggshell membrane) scaffold and carried out a template driven mineralization of CaCO₃ as model systems. The surface modifications were carried out by the pre-adsorption of acidic polymers before the deposition of the CaCO₃. The deposition of the crystalline calcium carbonate on these modified templates were archived from a supersaturated solution of Ca(HCO₃)₂. / Singapore-MIT Alliance (SMA)

Atmospheric acidic deposition has negatively impacted many Appalachian watersheds in the eastern United States and soils play a key role in the biogeochemical processes that govern the fate and transport of the acidic pollutants. Thus, the collection of soil chemistry data, a previously lacking component, is essential to understand the soil processes related to the retention or release of basic and acidic ions and is imperative for the prediction of ecosystem recovery. Soil chemical properties related to acidification were characterized for 25 sites within eight acid-sensitive watersheds located in the Great Smoky Mountains National Park (GRSM). Relationships were identified by comparing soil chemistry to watershed characteristics including site location, soil characteristics, forest type, geomorphic factors and the presence of Anakeesta. The Walker Camp Prong watershed had significantly higher soil base saturation, calcium and magnesium than all other study watersheds as a result of the application of dolomitic limestone to roadways for wintertime traction control. Significant differences in soil chemistry between the spatially close watersheds of Cosby and Rock Creek demonstrated how local factors can substantially influence the watershed acidification response. The chemical properties of the six study soil types, representing 60% of the entire GRSM, had no significant differences, suggesting soil chemistry must be governed by external inputs and basin characteristics, more so than parent material. This idea was strengthen by the ability to relate many soil chemical properties to forest type and identifying other chemical properties as functions of elevation, slope and soil depth. Also, the presence of unexposed Anakeesta did not seem to have any significant effect on soil chemical properties because all significant differences could be linked to factors unrelated to surficial geology. The majority of the soils of the GRSM study watersheds seem to be experiencing the deleterious effects of long-term exposure to acidic deposition and it could be assumed that soils in many other areas of the park may be enduring the same. The results provide a comparative baseline dataset and important input parameters for biogeochemical modeling. The relationships identified among watershed factors and soil chemical properties can aid in future study designs.

The local corrosion behavior of duplex stainless steel (DSS)is affected by a wide variety of factors. Localized corrosionof DSS frequently starts at micrometer scale inclusions orprecipitates, which are often segregated in theaustenite-ferrite boundary regions. Moreover, due to thepartitioning of the key alloying elements of ferrite (Cr andMo) and austenite (N and Ni), the local interactions betweenthe phases must also be considered. The aim of this doctoral study was to increase the knowledgeabout the local dissolution behavior of DSS in acidic-chlorideenvironments. The recent developments of new local probingtechniques have opened a new frontier in corrosion science,providing valuable local information not accessible in thepast. The local techniques used include electrochemicalscanning tunneling microscopy (EC-STM), scanning probe forcemicroscopy (SKPFM), magnetic force microscopy (MFM), andscanning Auger electron Spectroscopy (SAES), all withmicrometer or sub-micrometer resolution. With EC-STM, it was possible to monitor local dissolutionprocesses on DSS in situ, and in real time. MFM was capable ofimaging the phase distribution in DSS without the need of thetraditional surface etching, while SKPFM revealed that theVolta potential difference between the two phases wasmeasurable and significant. SAES showed that the compositiongradient at the phase boundaries is narrower than 2µm. Different types of DSSs have been studied, from low-alloyedDSS to superduplex. Higher contents of Cr, Mo and Nstrengthened both phases as well as the phase boundaries,resulting in phases having similar corrosion resistance thatshowed a more uniform dissolution behavior. However, the Voltapotential difference between the phases proved to be of thesame order for all the DSSs studied. Austenite was in generalassociated to regions displaying a more noble Volta potentialthan ferrite, resulting in a higher dissolution rate of theferrite next to the austenite phase. <b>Key words:</b>In situ, local dissolution, electrochemical,STM, SKPFM, MFM, SAES, duplex stainless steel, acidic-chloridesolution.

The objective of this thesis was to examine the role of ps20 in virus infections. We provide evidence that MHV-1 infection resulted in increased lung viral titers in ps20-/- mice. These data highlight an antiviral role for ps20 in MHV-1 infection. We also observed an increase in the percentage of GR1+ neutrophils infiltrating the BAL and in the lung draining lymph node of ps20-/- mice, on day 2 post-infection. In vitro, gene expression analysis identified an increase in expression of CXCL1 and CXCL2 in MHV-1 infected ps20-/- fibroblasts. These data suggest a role for ps20 in regulating neutrophil chemotactic factors, and migration. Next, we examined influenza A/WSN/33, and provide evidence that ps20 functions as a proviral factor. In vivo, ps20-/- mice infected with influenza A/WSN/33 exhibited decreased lung viral titers. These data suggest that ps20 functions as either a proviral or antiviral agent, dependent on the infecting virus.