Lipossomos de cloreto de dioctadecildimetilamonio (DODAC) com 0,51µ de diâmetro externo médio e transição de fase ocorrendo em uma faixa estreita de temperaturas (0,5-1,0°C) foram obtidos por vaporização de clorofórmio e comparados com vesículas sonicadas de DODAC (cerca de 250 Å de diâmetro externo). Sacarose foi impermeante através de lipossomos grandes de DODAC ou de vesículas sonicadas de DODAC podendo ser utilizada para determinações de volume interno em ambas as preparações. Volume interno aparente para lipossomos grandes de DODAC foi 9,7 ± 1,3 1/mol e para vesículas sonicadas de DODAC, 0,33 ± 0,20 1/mol (adsorção de sacarose à bicamada de, respectivamente, 0,64 ± 0,30 e 0,20 ± 0,08 1/mol). Lipossomos grandes de DODAC comportaram-se como osmômetros em relação à sacarose e ao KCl (0-50mM KCl). Já as vesículas sonicadas de DODAC foram osmoticamente não-responsivas em relação à sacarose, floculando em presença de KCl. Essa não-responsividade osmótica foi interpretada como decorrente da presença única e exclusiva de água de hidrataçao no compartimento aquoso interno das vesículas sonicadas. Outras propriedades de lipossomos grandes de DODAC foram análogas às apresentadas por lipossomos de fosfolípides. Permeabilidades relativas (KCl como referência incorporado ao compartimento aquoso interno) do NaCl, HCl e sacarose foram similares às descritas para lipossomos de fosfatidilcolina; NaCl e sacarose sendo tão impermeantes quanto o KCl e HCl, sendo ligeiramente mais permeante que o KCl. Nas vizinhanças da temperatura de transição de fase, ocorreu um acentuado aumento da velocidade inicial de encolhimento e a extensão total de encolhimento chegou a um mínimo. A comparaçao de algumas propriedades físicas e funcionais de vesículas sonicadas e de lipossomos grandes de DODAC permitiu concluir que lipossomos grandes de DODAC constituem um modelo mais adequado para estudos de transporte. Adicionalmente, o método de vaporização de clorofórmio foi testado para o dihexadecilfosfato de Na+ (DCP) sendo obtidas dispersões homogêneas desse anfifílico capazes de incorporar um volume de 13 ± 4 1/mol e de responderem como osmômetros a gradientes osmóticos de sacarose, um soluto que praticamente nao é adsorvido à bicamada de DCP e que resultou impermeante através da mesma. / Dioctadecyldimethylammonium chloride (DODAC) liposomes with 0.51µ mean external diameter and sharp phase transitions were obtained by chloroform vaporization and compared with (small) sonicated DODAC vesicles. Sucrose was impermeant through large DODAC liposomes and sonicated vesicles and was used for internal volume determinations. The apparent internal volumes for large DODAC liposomes and sonicated DODAC vesicles were, respectively, 9.7 ± 1.3 and 0.33 ± 0.20 1/mol. (External sucrose adsorption were, respectively, 0.64 ± 0.30 and 0.20 ± 0.08 l/mol). Ideal osmometer behaviour towards KCl over the 0-50mM concentrations range and towards sucrose were observed only for large DODAC liposomes. Sonicated DODAC vesicles were osmotically non responsive towards sucrose and floculate with KCl. Other properties of large DODAC liposomes closely resembled those of phospholipid liposomes. At temperatures near the phase transition temperature, a steep increase in the initial shrinkage rate and a minimum for the total extent of shrinkage occured. Relative permeabilities (KCl as reference entrapped inside) to NaCl, HCl and sucrose were similar to those of phosphatidyl choline liposomes. NaCl and sucrose were as impermeant as KCl, and HCl slighthly more permeant than KCl. Large DODAC liposomes are proposed as an adequate synthetic membrane model, in contrast to sonicated DODAC vesicles. In addition, the chlroform vaporization method was tested for sodium dihexadecylphosphate (DCP). Large DCP liposomes were demonstrated to be impermeant towards sucrose entrapping 13 ± 4 l/mol and behaving as an osmometer towards this solute.

Investigou-se o efeito do \"caráter iônico\" de interfaces zwitteriônicas, formalmente neutras, representadas por micelas e vesículas obtidas de monômeros com cabeça hidrofílica dipolar, nas propriedades de acumulação e troca de espécies iônicas. Os sistemas estudados incluíram, micelas de 1-(N-hexadecil-N,N-dimetilamônio) propanossulfonato (HPS), Hexadecil fosforil colina (C16PN), 3-hexadecil glicerofostidil colina (lisoPC) e vesículas de fosfatidil colina (PC). O estudo da ligação e troca iônica nestas interfaces foi monitorado a partir de efeitos sobre reações prototrópicas de sondas como a 8-hidroxi-1,3,6-pirenotrisulfonato de sódio (piranina). Observou-se a ligação crescente da piranina na seguinte ordem lisoPC < C16PN < HPS e troca iônica com sais adicionados (função do ânion) na ordem inversa, isto é, lisoPC &gt; C16PN &gt; HPS. Estudos de reprotonação de 1 e 2 naftóis incluídos nestes agregados, via salto de pH induzido por laser, revelaram um perfil de concentração de prótons inverso àquele das cargas do dipolo, isto é, concentração nos polos negativos e exclusão nos positivos. Este resultados foram ainda reforçados por estudos de excitação de volume, via espalhamento de luz, com micelas de HPS em função de sal adicionado. A partir destes resultados propôs-se um modelo de capacitor esférico imerso em meio eletrolítico para estas interfaces, o qual se mostrou bastante versátil na análise e previsão de resultados experimentais. Em suma, estabeleceu-se no presente trabalho a visão de que interfaces dipolares são geradoras de assimetria iônica na circunvizinhança da interface, assimetria esta de polaridade invertida àquela do dipolo radialmente disposto à interface. A generalidade deste modelo pode ser extrapolado para outras interfaces e colaborar na compreensão de diversos processos que dependem da acumulação e troca iônica. / The effect of ionic domains of formally neutral zwitterionic interfaces, represented by micelles and vesicles obtained with dipolar headgroups amphiphiles, on the binding and exchange of ionic species were investigated. The systems studied included: aqueous micelles of 1-(N-hexadecyl-N,N-dimethylammonio) Propane Sulfonate (HPS), Hexadecyl Phosphoryl Choline (C16PN), and 1-hexadecylglycerophostidyl Choline (lisoPC) and vesicles of Phosphatidylcholine (PC). Binding and ion-exchange processes were assessed from the effect of these agreggates on prototropic reactions of probes such as 8-hydroxy-1,3,6-pyrenetrisulfonate pyranine). Binding of pyranine increased in the following order lisoPC < C16PN < HPS. The effectiveness of anion dependent salt displacement of the probe from the aggregates was opposite to that of affinities, i.e. lisoPC &gt; C16PN &gt; HPS. Laser pH jump studies with 1 and 2 naphtols incorporated in these aggregates revealed a proton concentration profile inverse to that of the charged dipole, that is, accumulation in the region vicinal to the negatively charged group and exclusion from the positive end of the dipole. This finding were substantiated by HPS micelle excluded volume data, obtained from light scattering studies as function of added salt. A model of a spherical capacitor immersed in an electrolyte media for these interfaces was proposed. This model accounts for satisfactorily the observed characteristics of these interfaces. The model establishes that dipolar interfaces generate ionic asymmetries in the neighborhood of the interface that opposes the radially extended monomer dipole. The generality of the model can be very helpful in the analysis and understanding of several processes occurring in/at zwitterionic interfaces.

Lipid bilayers and lipid-associated proteins play crucial roles in biology. As in vivo studies and manipulation are inherently difficult, membrane-mimetic systems are useful for the investigation of lipidic phases, lipid–protein interactions, membrane protein function and membrane structure in vitro. This dissertation describes a route to leverage the programmability of DNA nanotechnology to create DNA-encircled bilayers (DEBs), a novel nano-scaled membrane-mimetic system. DEBs are made of multiple copies of an alkylated oligonucleotide hybridized to a single-stranded minicircle, in which up to two alkyl chains per helical turn point to the inside of the toroidal DNA ring. When phospholipids are added, a bilayer is observed to self-assemble within the ring such that the alkyl chains of the oligonucleotides stabilize the hydrophobic rim of the bilayer to prevent formation of vesicles and support thermotropic lipid phase transitions. This straight-forward and robust route enables the rational design of DEBs so that their size, shape or functionalization can be adapted to the specific needs of biophysical investigations of lipidic phases and the properties of membrane proteins. Next, we optimized the DEB system to provide proper anchoring of a large variety of lipids by creating an improved DNA scaffold. This scaffold, called DNA double-decker, consists of two interconnected DNA minicircles stacked on top of each other. In comparison to the DNA minicircle in DEB system, this scaffold is two times thicker and contains two times more hydrophobic strands, which should increase the stability of the lipid bilayer rim. Finally, we explored the option of using DEBs in studies of GPCRs using CCR5 as a model protein. The CCR5 was labeled with DNA strands, purified and characterized. The strands on CCR5 are complementary to the protruding strands on the DNA minicircle in DEBs. This can allow the reconstitution of GPCRs inside DEBs with controlled orientation of the receptor.

No description available.

As a direct consequence of the misuse of antibiotics since its first discovery, bacteria have developed extensive resistance mechanisms making them once again potential lethal threats. This eventuality has triggered a vast research effort from scientists worldwide to find solutions to mitigate antimicrobial resistance. One such option is the identification of new potential antimicrobial agents, like for example antimicrobial peptides (AMPs). Various methods have been applied to evaluate the properties and determine the complex mechanism of AMPs. However, the details of the mechanism remain unknown and hence the work in this project seeks to examine the suitability of using TIR Raman, a vibrational spectroscopy technique which is sufficiently surface sensitive to study the interaction of AMPs in contact with lipid bilayers, which are just a few nanometres thick. In order to evaluate the information that could be extracted from TIR Raman, measurement of solid supported lipid bilayers in the absence of peptides were first carried out. In particular, the lipid DMPC with a phase transition close to room temperature, was measured at various temperatures to determine spectral changes associated with the transition. For the peptide-membrane interactions, the AMP LL37 was put into contact with solid supported lipid bilayers modelling the cell membranes of bacteria (DOPE, DOPG) or humans (DOPC) respectively. The data clearly indicates that the membrane composition, and specifically the lipid head group charge, play an important role in the peptide-membrane interactions. In the bilayers mimicking bacteria cell membranes, the peptide either absorbed onto or inserted into the bilayer. In contrast, for the bilayer modelling a human cell membrane, no significant variations were detected, indicating no interaction with LL37. The findings presented in this work generally coincide with similar research of LL37 using other techniques. At hand of the herein presented data, TIR Raman has proven suitable and effective in detecting effects of antimicrobial peptides in contact with model lipid bilayers, and hence can be recommended for further studies. / Som en direkt följd av missbruket av antibiotika sedan det först upptäcktes, har bakterier utvecklat omfattande resistensmekanismer vilket föranlett dem att återigen utgöra potentiellt dödlig hot. Denna situation har manat fram en väsentlig forskningsinsats från forskare världen över att hitta lösningar för att minska antimikrobiell resistens. Ett sådant alternativ har varit identifieringen av nya potentiella antimikrobiella substanser, så som till exempel antimikrobiella peptider. Ett flertal metoder har använts för att både evaluera peptiders egenskaper och fastställa deras komplexa mekanism. Detta till trots förblir de exakta detaljerna i mekanismen okända, vilket föranlett arbetet i detta projekt att undersöka lämpligheten i att använda TIR Raman, en vibrational-spektroskopisk metod som är tillräckligt ytkänslig för att studera interaktionen hos antimikrobiella peptider i kontakt med lipidmembran, vilka endast är några få nanometer tjocka. För att evaluera informationen som kan utvinnas med TIR Raman, utfördes först mätningar av lipidmembran, skapade på ett solitt underlag, utan tillägg av peptider. Mer noggrant, har lipiden DMPC med en fasövergång nära vid rumstemperatur, mätts vid olika temperaturer för att fastställa spektrala variationer associerade till övergången. För peptid-membran interaktionerna, sattes den antimikrobiella peptiden LL37 i kontakt med lipidmembran som modellerar cellmembranet hos bakterier (DOPE, DOPG) respektive människor (DOPC). Mätdatan indikerar tydligt att membrankompositionen, och där specifikt laddningen av lipidens huvudgrupp, spelar en viktig roll i membran-peptid interaktionerna. För lipidmembranen som imiterar bakteriella cellmembran, adsorberade peptiden till membranet eller integrerades in i det. Till skillnad från detta, kunde inga signifikanta variationer detekteras för lipidmembranet som modellerade ett mänskligt membran vilket indikerar att det inte interagerar med peptiden LL37. Upptäckterna som presenteras i detta arbete sammanfaller generellt med andra, liknande studier där andra instrument använts för att undersöka LL37. Det kan ur materialet som presenterats här utläsas att TIR Raman visat sig lämpligt och effektivt i detekteringen av antimikrobiella peptider i kontakt med modeller av lipidmembran, och kan därav rekommenderas för fortsatta studier.

Alpha-hemolysin is a pore-forming toxin secreted by pathogenic Staphylococcus aureus. Its spontaneous oligomerization and assembly into a trans-bilayer beta-barrel pore is a model for the assembly of many other pore-forming toxins. It is studied here in vitro as a means to probe general membrane protein oligomerization and lipid bilayer insertion. This thesis details the results of experiments to develop and implement a novel in vitro lipid bilayer system, Droplet-on-Hydrogel Bilayers (DHBs) for the single-molecule imaging of alpha-hemolysin assembly. Chapter 2 describes the development of DHBs and their electrical characterization. Experiments show the detection of membrane channels in SDS-PAGE gels post-electrophoresis and DHBs use as a platform for nanopore stochastic sensing. Chapter 3 describes the engineering and characterization of fluorescently-labelled monomeric alpha-hemolysin for use in protein assembly imaging experiments described in Chapter 6. Chapter 4 describes the characterization of DHB lipid fluidity and suitability for single-molecule studies of membrane protein diffusion. In addition, a novel single-particle tracking algorithm is described. Chapter 5 describes experiments demonstrating simultaneous electrical and fluorescence measurements of alpha-hemolysin pores embedded within DHBs. The first multiple-pore stochastic sensing in a single-lipid bilayer is also described. Chapter 6 describes experiments studying the assembly of alpha-hemolysin monomers in DHBs. Results show that alpha-hemolysin assembles rapidly into its oligomeric state, with no detection of long-lived intermediate states.

The biological membrane, which is composed of a lipid bilayer embedded with numerous proteins, defines the cell boundary, separating the cell interior from the external environment. It serves as a gatekeeper and entry point for various molecular and ionic species. This thesis describes experimental and simulation studies of the interactions of carbon nanotubes (CNTs) with model membranes (lipid bilayers). The unique properties of CNTs make them ideal candidates for many nanotechnological applications. They can, however, pose a potential risk as toxins. While research into the positive benefits of CNTs continues, very little is known about their basic interactions with cellular components. It is particularly important to understand the interaction of CNTs with biological membranes, which form the primary physical barrier surrounding a cell. Coarse grained molecular dynamics (MD) simulations and atomic force microscopy (AFM) have been used to study the interactions of CNTs and lipid bilayers. They are investigated in a controlled manner using MD simulations, while AFM has allowed the controlled approach-to-contact and insertion of CNTs into bilayers. A number of effects are reported, including lipid creep along the CNT and bilayer thickening upon contact. The robustness of this response is established using different force fields and lipid species. The experimental results show an unusual reaction to mechanical indentation, and are further backed by MD simulations. The lipid bilayer response to multiple CNTs is studied and the effects of CNTs on bilayer conformation and lipid diffusion are reported. CNT internalisation from the solvent is observed in the simulations. Indeed, many of the observed phenomena are reminiscent of those known from the field of membrane protein. This project focuses on understanding the basic molecular interactions of CNTs with lipid bilayers and addresses the gap between experimental and computational work.

Biossensores que empregam dispositivos de efeitos de campo podem ser obtidos em diversas arquiteturas, incluindo dispositivos Eletrólito-Isolante-Semicondutor (EIS), que são capacitores em que o eletrodo metálico é substituído por um filme e uma solução. Medindo-se a capacitância em função do potencial aplicado, é possível detectar variações de pH oriundas de reações ou interações entre o filme e o analito. Nesta dissertação, sensores foram produzidos com a adsorção de filmes automontados de dendrímero (PAMAM) e nanotubos de carbono (SWNT) num chip. Medidas de espectroscopia de impedância foram realizadas para investigar o crescimento de cada bicamada do filme automontado, e os dados foram analisados com circuitos equivalentes que continham uma capacitância de dupla camada, um elemento de fase constante e uma capacitância para a região de depleção. Para o chip, os melhores ajustes foram obtidos na frequência de 2 kHz, em que a concentração de dopantes foi 6,6x1020 m-3 para o chip com isolante de SiO2 e de 1,1x1021 m-3 para o chip com isolante de SiO2/Ta2O5. O potencial de banda plana foi -0,2 V e -0,06V, respectivamente. Para os chips recobertos com os filmes de PAMAM/SWNT, observamos que a região de depleção é causada pelas cargas positivas do PAMAM. Com relação às implicações para biossensores, verificamos que o desempenho ótimo deve ser obtido com 3 bicamadas de PAMAM/SWNT. Isso pode explicar a observação empírica na literatura de que existe uma espessura ideal dos filmes para um desempenho otimizado. / Biosensors based on field effect devices can be produced with several architectures, including Electrolyte-Insulator-Semiconductor (EIS) devices, which are capacitors where conventional metal electrodes are replaced by a sensing layer and an electrolyte solution. By measuring the capacitance as a function of the bias voltage, it is possible to detect pH changes that may originate from reactions or interactions between the film in the sensing unit and the analyte. In this study sensors were obtained by adsorbing layer-by-layer (LbL) films made with dendrimers (PAMAM) and carbon nanotubes (SWNT) on a semiconductor chip. Impedance spectroscopy measurements were performed to monitor the growth of each bilayer in the LbL film, whose data were analyzed with equivalent circuits containing a double-layer capacitance, a constant phase element and a capacitance for the depletion region. The results for the semiconductor chip could be best fitted for a frequency of 2 kHz, where the doping concentration was 6.6 x1020 m-3 for the insulating SiO2 layer and 1.1 x1021 m-3 for the SiO2/Ta2O5 layer. The flat band voltage was -0.2 V and -0.06 V, respectively. In the analysis of the chip coated with different numbers of PAMAM/SWNT bilayers, we found that the depletion region appears as a contribution from the positive charges in the PAMAM layer. With regard to implications for biosensors, we found that optimized performance should be reached with three PAMAM/SWNT bilayers, which may explain the empirical finding in the literature that an ideal thickness exists for enhanced performance.

<p>The focus of this thesis has been on the effects of segregation in mixtures of amphiphilic molecules. Two different systems were investigated: fluorocarbon-hydrocarbon surfactant mixtures and lipid-surfactant mixtures.</p><p>In fluorocarbon-hydrocarbon surfactant mixtures the repulsive interactions between the chains can lead to a demixing into different types of coexisting micelles, fluorocarbon rich and hydrocarbon rich. From NMR self-diffusion measurements such a demixing was found to occur in the mixture of the partially fluorinated surfactant HFDePC and C₁₆TAC. We furthermore suggested a demixing also within the micelles to explain ¹⁹F-NMR line width data and results from neutron scattering.</p><p>In lipid-surfactant mixtures, a segregation of the molecules may instead be caused by a difference in the preferred curvature of the lipid and the surfactant residing within the same aggregate. Using a surfactant selective electrode, binding isoterms of four different cationic surfactants (C₁₂TAC, C₁₄TAC, C₁₆TAC and HFDePC) to preformed lipid (GMO) vesicles were determined. Perforated vesicles were observed by cryo-TEM in the mixture with C₁₆TAC. To explain the results from the binding isoterms, the formation of pores in the bilayer was regarded as a cooperative process, similar to micelle formation. The surfactant accumulates at the edges of the pores, and increasing the surfactant concentration results in an increased number of pores with a constant surfactant/lipid ratio at the edges.</p><p>The lipid-surfactant mixtures were also studied at the solid/solution interface using AFM. An adsorbed mesh structure, a counterpart to the bulk perforated lamellar phase, was observed for the first time.</p>

This thesis focuses on the use of biomolecular assemblies for creating materials with novel properties. Several aspects of biomimetic materials have been investigated, from fundamental studies on membrane shaping molecules to the integration of biomolecules with inorganic materials. Triply periodic minimal surfaces (TPMS) are mathematically defined surfaces that partition space and present a large surface area in a confined space. These surfaces have analogues in many physical systems. The endoplasmic reticulum (ER) can form intricate structures and it acts as a replica for the wing scales of the butterfly C. rubi, which is characterized by electron microscopy and reflectometry. It was shown to contain a photonic crystal and an analogue to a TPMS. These photonic crystals have been replicated in silica and titania, leading to blue scales with replication on the nanometer scale. Replicas analyzed with left and right handed polarized light are shown be optically active. A macroporous hollow core particle was synthesized using a double templating method where a swollen block copolymer was utilized to create polyhedral nanofoam. Emulsified oil was used as a secondary template which gave hollow spheres with thin porous walls. The resulting material had a high porosity and low thermal conductivity. The areas of inorganic materials and functional biomolecules were combined to create a functional nanoporous endoskeleton. The membrane protein ATP synthase were incorporated in liposomes which were deposited on nanoporous silica spheres creating a tight and functional membrane. Using confocal microscopy, it was possible to follow the transport of Na+ through the membrane. Yop1p is a membrane protein responsible for shaping the ER. The protein was purified and reconstituted into liposomes of three different sizes. The vesicles in the 10-20 nm size range resulted in tubular structures. Thus, it was shown that Yop1p acts as a stabilizer of high curvature structures. / <p>At the time of the doctoral defense, the following papers were unpublished and had a status as follows: Paper 2: Manuscript. Paper 3: Submitted. Paper 4: Submitted. Paper 5: Submitted.</p>