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Insects represent very useful experimental model in various branches of biological research. The investigation is driven by economic importance of many insect species, and also by biological features of insects as model organisms such as short period of reproduction, easy breeding and manipulation and, in particular, the minimal regulatory requirements which are associated to the management of vertebrates. Here we report robust and efficient LC/MS/MS methodology for the determination of the physiologically important lipid molecular species in insects. The target metabolites represent polar glycerophos-phopholipids (GPL) and nonpolar lipids diacylglycerols (DG) and triacylglycerols (TG). Combination of the LC/MS data with the subsequent GC fatty acid analysis enables complete structural elucidation of particular lipid species including their fatty acid compositions. The developed methodology was applied to studies of the chill tolerance of the firebug Pyrhocorris appterus. Fields and laboratory experiments were conducted to separate the triggering effects of low temperature, desiccation and diapause progression on the physiological characteristics related to chill tolerance with emphasis on the restructuring of GPL composition. The same effect on the GPL composition was observed during acclimatization in the field and cold acclimation in laboratory. By contrast, the GPL changes related to desiccation and diapause progression were relatively small (Tomčala et al, 2006). In adults of Drosophila melanogaster it has been found that acclimation at 15, 20 and 25°C during preimaginal development affects thermal tolerance and composition of membrane GPLs. Low temperature acclimation was associated with increase in proportion of ethanolamine at the expense of choline in GPLS. Relatively small, but statistically significant changes in lipid molecular compositon were observed with decreasing acclimation temperature (Overgard et al, 2008). Hormonal treatment studies on insect model Locusta migratoria showed a heterogeneous distribution of individual DGs in haemolymph after the hormone application and revealed that mobilization of the DGs is molecular species-specific with the highest proportion of DG 16:0/18:1 and forming in summary about 20% of the total mobilized DG content. Additional analysis of fat body triacylglycerols revealed that the AKH mobilizes the DGs specifically with the preference of those possessing the unsaturated C18 fatty acids (FAs). The fat body FAs with more than 18 carbons did not participate on the mobilization (Tomcala et al, 2009). The LC/MS methodology was further applied to lipid composition studies of several samples with very diverse biological origin (fish, human blood etc.) and was proved to be universally applicable to the wide scope of biological samples.

Le MGDG (monogalactosyldiacylglycerol) et le DGDG (digalactosyldiacylglycerol) sont les lipides les plus abondants des membranes du chloroplaste. Ils sont synthétisés exclusivement dans l'enveloppe plastidiale par l'action des MGDG synthases (MGD1, MGD2 et MGD3) et des DGDG synthases (DGD1 et DGD2). Les galactolipides sont essentiels pour la structuration des photosystèmes et la biogenèse des thylacoïdes. En carence de phosphate, les galactolipides deviennent une source de lipides pour composer certaines membranes en dehors du chloroplaste. Suivant une stratégie de criblage pharmacologique à haut débit, une nouvelle molécule appelée galvestine-1 a pu être identifiée et caractérisée comme un inhibiteur des MGDG synthases. La galvestine-1 agit par compétition avec le diacylglycérol. Cet outil moléculaire permet donc de perturber le système complet constitué par l'ensemble des réactions de synthèses, de conversions et de trafics lipidiques, aboutissant à cet état stable que nous appelons homéostasie des lipides. Le but de cette thèse est de mettre en évidence, à l'aide de la galvestine-1, de nouveaux acteurs ou nouvelles voies permettant l'établissement de l'homéostasie lipidique à l'échelle de la cellule végétale. Pour cela, j'ai réalisé un criblage de mutants EMS (ethyl methanesulfonate) dans le but d'isoler des mutants résistants à la galvestine-1 et d'identifier les gènes mutés conférant cette résistance. Des données transcriptomiques (Affymetrix genome array genechip, ATH1) d'Arabidopsis thaliana traité en présence de galvestine-1 ont par ailleurs été obtenues avant le début des travaux de thèse. Ces données ont permis de cibler des gènes dont l'expression variait et possiblement impliqués dans l'homéostasie lipidique. En parallèle de l'approche sans a priori, j'ai donc réalisé une étude suivant une stratégie de gènes candidats sur ALA10, un gène codant pour une flippase putative, sur-exprimé après traitement à la galvestine-1 et en carence de phosphate. Le second volet de cette thèse vise donc à comprendre la relation entre l'expression d'ALA10 et les gènes impliqués dans la synthèse des galactolipides chez la plante. / MGDG (monogalactosyldiacylglycerol) and DGDG (digalactosyldiacylglycerol) are the most abundant membrane lipids of the chloroplast. They are synthesized exclusively in the chloroplast envelope by the action of MGDG synthases (MGD1, MGD2 and MGD3) and DGDG synthases (DGD1 and DGD2). Galactolipids are known to be essential for the structure (and function) of the photosystems and for the biogenesis of thylakoids. In phosphate deprivation, galactolipids become a source of lipid for other cell membranes, outside the chloroplast. Based on a high throughput chemical screen, a new molecule called galvestine-1 has been identified and characterized as an inhibitor of MGDG synthases. Galvestine-1 competes with the binding of the diacylglycerol substrate to MGDs. This molecular tool can be used to disturb the system comprising all lipid biosynthesis reactions, conversions, and lipid trafficking, responsible for the membrane lipid steady state observed at the whole cell level, or membrane lipid homeostasis. Perturbation of the system occurs at the level of MGDG synthases. The aim of this thesis is to use the effect of galvestine-1 to identify new actors or new pathways involved in the control of lipid homeostasis in plant cells. To this purpose, I designed and performed a screening of a collection of EMS (ethyl methanesulfonate) mutants, in order to isolate galvestine-1-resistant mutants and to identify mutated genes conferring this resistance. Transcriptomic data (Affymetrix genome array genechip, ATH1) of Arabidopsis thaliana treated in the presence of galvestine-1 had been obtained prior to the PhD project. These data were used to identify genes whose expression varied and possibly involved in lipid homeostasis. Based on a complementary candidate gene approach, I focused on Ala10, a putative flippase, which gene is over-expressed after treatment with galvestine-1 and following phosphate deprivation. The purpose of this second part of this thesis is to understand the relationship between the expression of ALA10 and genes involved in galactolipid synthesis in plants.

La picoalgue verte marine Ostreococcus tauri est un eucaryote minimal développé en système modèle et qui a servi de ressource de gènes en biologie des lipides. Des informations détaillées sur ces caractéristiques lipidiques étaient cependant manquantes. Lors de ma thèse j’ai caractérisé le glycérolipidome d’O. tauri et ai cherché à déterminer quelles sont les cibles enzymatiques responsables de la dynamique des acides gras (FA) et de la régulation du métabolisme lipidique en réponse à des modifications de l’environnement (carences nutritives et refroidissement). O. tauri présente des caractéristiques uniques de composition en lipides et en FA mixtes entre les algues vertes et les Chromalveolates, et a été validé comme espèce modèle pour la classe des Mamiellophyceae. L’acide docosahexaénoïque (DHA) est confiné dans les lipides présumés extraplastidiaux : le phosphatidyldimethylpropanethiol (PDPT) et le bétaïne-lipide diacylglyceryl-hydroxymethyl-trimethyl-β-alanine (DGTA), tous deux marqueurs lipidiques des Chromalveolates. Les lipides plastidiaux de type procaryotique sont caractérisés par une prépondérance de FA polyinsaturés (PUFA) en C18 n-3, le 18:5 n-3 étant restreint aux galactolipides. Le 16:4 n-3, PUFA typique des galactolipides des microalgues vertes, est également un composant majoritaire des lipides extraplastidiaux chez O. tauri. Les triacylglycérols (TAG) présentent tout le panel d’acides gras d’O. tauri et leurs combinaisons moléculaires indiquent une origine plastidiale majoritaire. La carence azote provoque une forte accumulation de TAG, notamment des espèces présentant des combinaisons sn-1/sn-2 en 18:X/16:X et s'accompagne d'un transfert de carbone du phosphatidylglycérol (PG) et du monogalactosyldiacylglycérol (MGDG) aux TAG ce qui indique une contribution croissante de la voie plastidiale à la synthèse des TAG. Des expériences préliminaires de RT-qPCR sur des gènes du métabolisme des TAG révèlent une forte activation transcriptionnelle de certaines diacylglycérol acyltransférases (DAGT). Les carences nutritives répriment sévèrement l’activité Δ6 désaturase, générant une inversion du ratio 18:3/18:4 dans les lipides plastidiaux qui se répercute dans les TAG. La régulation fine et dynamique de ce ratio suggère un rôle important du 18:3 et du 18:4 dans les membranes plastidiales. Le refroidissement engendre une augmentation spécifique du 18:5 des galactolipides. La recherche active de la désaturase responsable de ce phénotype par une approche d'expression de gènes candidats en systèmes homologue et hétérologues (S. cerevisiae, N. Benthamiana) a conduit à l’indentification de deux Δ6 désaturases plastidiales jamais caractérisées dans d'autres systèmes. Celles-ci possèdent des spécificités non redondantes et originales entre elles et par rapport à l'acyl-CoA-Δ6 d'O. tauri. / The marine green picoalga Ostreococcus tauri is a minimal eukaryote implemented as model system that has been used as gene resource for lipid biology. Detailed information about its lipidic features was however missing. During my PhD, I characterized O. tauri glycerolipidome and associated dynamics under environmental stresses such as nutrient starvations and chilling and investigated transcriptional variations of putative target enzymes responsible for these changes. O. tauri which could be validated as model for related species of the class Mamiellophyceae, was found to display unique lipidic features related to both green and Chromalveolates microalgae. Docosahexaenoic acid (DHA) is confined to presumed extraplastidial lipids i.e. phosphatidyldimethylpropanethiol (PDPT) and the betaine lipid diacylglyceryl-hydroxymethyl-trimethyl-β-alanine (DGTA); all of these compounds are hallmarks of Chromalveolates. Plastidial lipids found to be of prokaryotic type are characterized by the overwhelming presence of C18 n-3 polyunsaturated FA (PUFA), 18:5 n-3 being restricted to galactolipids. C16:4 n-3, an FA typical of green microalgae galactolipids, also was a major component of O. tauri extraplastidial lipids. Triacylglycerols (TAGs) display the complete panel of FAs, and their molecular combinations designate a major plastidial origin of DAG precursors. Nitrate starvation greatly increases TAG content, in particular 18:X/16:X (sn-1/sn-2) combinations, and was associated with the transfer of carbon from phosphatidylglycerol (PG) and monogalactosyldiacylglycerol (MGDG) to TAG indicating an increased contribution of the plastidial pathway to the TAG synthesis. Preliminary RT-qPCR experiments on TAG metabolism genes revealed an important transcriptional activation of some diacylglycerol acyltransferases (DGAT). Nutrient starvations severely repress Δ6 desaturase activity and result in the inversion of the 18:3/18:4 ratio in plastidial lipids that was feedback into TAG. The fine-tuning and dynamic regulation of the 18:3/18:4 ratio suggests an important physiological role of these FAs in photosynthetic membranes. Chilling generates an increase of 18:5 in galactolipids. The active quest for the desaturases responsible for this phenotype was achieved by expressing candidate genes in homologuous and heterologous (S. cerevisiae, N. Benthamiana) systems and led to the identification of two yet uncharacterized plastidial Δ6 desaturases. These desaturases display original and non-redundant specificity between each other and with the previously characterized in O. tauri Δ6 acyl-CoA desaturase.

Scs2p ist ein integrales Membranprotein des Endoplasmatischen Retikulums (ER), dessen Deletion zu einer geringeren Expression der Inositol-1-P Synthase INO1 in Inositol-freiem Medium führt und dessen Überexpression die Inositol-Auxotrophie eines Stammes mit einer defekten "unfolded protein response" supprimiert. scs2 Mutanten weisen zudem eine erhöhte Sensitivität gegen Tunicamycin auf, eine Substanz, welche die N-Glykosylierung von Proteinen im ER inhibiert. Für die mutmaßlichen Orthologen von Scs2p in höheren Eukaryoten wurde eine Funktion dieser Proteine im vesikulären Transport postuliert. In dieser Arbeit wurde Scs2p als mit Cue1p, einer Komponente der ER-assoziierten Proteindegradation, quervernetzbares Protein identifiziert, und daraufhin begonnen, die Funktion von Scs2p näher zu charakterisieren. Eine Deletion von SCS2 hatte keinen Einfluß auf die bekannten Cue1p-abhängigen Degradationswege. Auch die Induktion der "unfolded protein response" (UPR) infolge einer Akkumulation von falsch gefalteten Proteinen wurde durch eine Deletion von SCS2 nicht beeinträchtigt. Eine Beeinträchtigung des Transportes durch den sekretorischen Weg konnte in scs2 Hefen ebenfalls nicht nachgewiesen werden. scs2 Mutanten zeigten eine generell verminderte Expression von Genen der Glycerolipid Biosynthese, deren Transkription über Ino2p/Ino4p reguliert wird. Dabei beeinträchtigte eine Deletion von SCS2 nicht die Induktion der UPR in Inositol-armem Medium und die darüber vermittelte Induktion der INO1 Expression. Ein analoger Phänotyp wurde auch in Mutanten beobachtet, in denen die Gene von Ubc7p, einer Komponente der ER-Degradation oder Lcb3p, einer Sphingosin-P Phosphatase, deletiert waren. Dabei bestand in bezug auf die Ino2p/Ino4p-abhängige Expressionsregulation keine epistatische Beziehung zwischen den drei Gendeletionen. Untersuchungen des Einflusses verschiedener Mutanten und Inhibitoren des Sphingolipid Stoffwechsels zeigten, daß Änderungen der Synthese von komplexen Sphingolipiden die Regulation der Inositol Synthese nur indirekt beeinflußten und gaben Hinweise auf eine Regulation des Glycerolipid Stoffwechsels durch Sphingosin. scs2 Mutanten erwiesen sich als sensitiv gegen Inhibitoren der Sphingolipid Biosynthese. Untersuchungen von Stämmen, in denen verschiedene Gene der Sphingolipid Synthese deletiert wurden, sowie Analysen der Lipidzusammensetzung zeigten, daß in scs2 Zellen eine Regulation beeinträchtigt ist, welche die IPC Synthase Aktivität bei einem verringerten Sphingolipid Gehalt der Zelle erhöht. Die geringere Expression von Genen der Glycerolipid Synthese und die niedrigere Kapazität zur Synthese von komplexen Sphingolipiden erwiesen sich als voneinander unabhängige Auswirkungen eines komplexen Phänotyps von scs2 Deletionsmutanten, wobei die primäre Funktion von Scs2p vermutlich nicht im Lipidstoffwechsel liegt. / Scs2p is an integral membrane protein of the endoplasmic reticulum (ER), whose deletion leads to a reduced expression of INO1 encoding inositol-1-phosphate synthase and whose over-expression suppresses the inositol auxotrophy of a strain with a defect unfolded protein response (UPR). scs2 mutants display an enhanced sensitivity to Tunicamycin, an inhibitor of protein N-glycosylation in the ER. It has been proposed that the putative orthologs of Scs2p in higher eukaryotes function in vesicular transport. In this work Scs2p, which was identified as a protein that can be crosslinked to Cue1p, a protein involved in ER-associated protein degradation, was further characterised. A deletion of SCS2 did not affect the known Cue1p-dependend degradation pathways. Cells lacking Scs2p normally induced the UPR upon an accumulation of misfolded proteins. An impairment of protein transport through the secretory pathway could also not be detected in scs2 cells. scs2 mutants displayed a generally reduced expression of genes involved in glycerolipid synthesis, whose transcription is regulated by Ino2p/Ino4p. The induction of the UPR in inositol-free medium and the subsequent upregulation of INO1 expression were not impaired in these cells. A similar effect was observed in strains lacking Ubc7p, a component of the ER -associated protein degradation system and in cells lacking the sphingoid base-1-phosphate phosphatase Lcb3p. Regarding the Ino2p/Ino4p-dependend gene expression no epistatic relationship was observed between Scs2p, Ubc7p and Lcb3p. An examination of the influence of various mutants and inhibitors of the sphingolipid pathway indicated that alterations of the synthesis of complex sphingolipids have only an indirect influence on the regulation of inositol synthesis and pointed towards a control of glycerolipid synthesis by sphingoid bases. scs2 cells were found to be sensitive to inhibitors of sphingolipid biosynthesis. The examination of strains lacking various enzymes involved in sphingolipid synthesis and direct analysis of lipid composition showed that a deletion of SCS2 impairs an upregulation of IPC synthase activity under conditions where the sphingolipid content of the cell is diminished. The reduced expression of genes involved in glycerolipid synthesis and the lower capacity for the synthesis of complex sphingolipids turned out to be mutually independent consequences of the complex phenotype of cells lacking Scs2p, whose primary function may not be in the lipid metabolism.

Modern separation and spectrometric techniques for biological sample lipidom investigation Due recent progress in field of mass spectrometry the lipidomics, part of metabolomics, is increasing its importance for broad fields of biological study. The aim of this study is to test the lipid extraction techniques and to optimize the preseparation and separation of lipids suitable for mass spectrometry detection. The fragmentation patterns of four, the most abundant lipid classes of glycerolipids (PC, PE, TG, DG), were acquired for the proposed system. These patterns were compared with literature. The most appropriate method for extraction was declared technique according Folch based on methanol and chloroform solution. The preseparation due SPE method is very useful tool for lipid determination. The optimized were focused to reach higher recovery especially in polar lipid fraction. Proposed HPLC system is based on methanol with ammonium buffer, water and isopropanol. The testing was done on three columns with different type of sorbents (Gemini, Syncronis and Kinetex). The separation was evaluated according mass spectrometer response, shape and wide of particular analytes peaks. Composition contains 20% of water was determinate as the best and also the best separation was achieved by Kinetex column. The proposed...