In a large agricultural operation, such as the one at Cal Poly San Luis Obispo, disposal of deceased animals is an immense issue. The cost of transporting and rendering every dead animal is inhibitory to the general function of the agricultural operations and their thin budget. Therefore, we propose that composting mortalities could be an economical alternative. Composting is a recognized method for taking animal waste products along with carbon waste and turning it into a pathogen-free, nutrient-rich topsoil. Carcass composting is in fact performed in other countries and states to varying degrees of success. However, the California EPA limits carcass composing to only private land. Therefore, the purpose of this work was to determine the efficacy of killing pathogens by composting using bench top composting models. Ultimately, our goal is to provide “proof of concept” data in order to gain permission for a full-scale carcass compost pile to be set up at Cal Poly San Luis Obispo. Using thermo tolerant Salmonella senftenberg as an indicator organism, we performed bench top trials of traditional and carcass compost in the lab. Samples were inoculated with S. senftenberg and kept at 55°C for 15 days in accordance with the California EPA and Test Method for the Examination of Composting and Compost (TMECC). Samples were then plated and processed for multiple tube analysis and most probable number. Samples were also partitioned for a viability qPCR with propidium monoazide (PMA) to compare to the classic techniques. Using these methods we were then able to track and produce thermal death time data for S. senftenberg in both traditional and carcass compost. By comparing the types of compost, we were able to determine that the composting method presented by the California EPA and the TMECC produces safe, pathogen free compost, even when inoculated carcasses were introduced. However, even with removal of dead cells by PMA, qPCR did not outperform the classical microbiological methods for as tracking pathogen killing.

Mycobacterium tuberculosis (Mtb) is one of the most virulent and prevalent bacterial pathogens across the world. As Mtb infects millions of people a year, it remains essential to study its physiology with the goal of developing new therapeutic interventions. A critical part of the bacteria’s ability to propagate is through successful cell division. Although the process of bacterial cell division and the key proteins therein are well understood in Escherichia coli, much remains to be understood about division in mycobacteria. Genetic and cell biological approaches have recently begun to identify key divisome components in Mycobacterium smegmatis. However, questions remain regarding the role and function of one divisome protein in particular, the DNA translocase FtsK. In this dissertation, I investigated the necessity of FtsK for the growth of mycobacteria. Using an inducible knockdown of FtsK, I present evidence that complete loss of FtsK is required to inhibit growth in both Mtb and M. smegmatis, and that these orthologs share a homologous function. Additional work suggests extended loss of FtsK may be lethal to bacteria. These observations support that FtsK is an essential member of the divisome in mycobacteria, facilitating the processes of growth and division.

No description available.

Over time, “superbugs,” or bacteria that have become resistant to antibiotics, have become a great concern in modern medicine. Viable alternates are currently being looked into as effective and safe ways to prevent or treat infections caused by these superbugs. One such method is through the utilization of the second messenger molecule cyclic-di-GMP (c-di-GMP) that has been shown to regulate phenotypes within other bacteria that may control surface colonization in Acinetobacter baumannii. Through a series of experiments, the active enzymes that create c-di-GMP - diguanylate cyclases - and break down c-di- GMP - phosphodiesterases - have been inactivated in mutants to test phenotypes including biofilm formation, motility, antibiotic resistance, and desiccation survival. The research’s objective is to show that manipulation of c-di-GMP within the multi-drug resistant strain of Acinetobacter baumannii may serve as a means to control this bacteria.

C-reactive protein (CRP) is a part of the innate immune system, is synthesized in the liver, its blood level increases in inflammatory states, and it binds to Streptococcus pneumoniae. The conformation of CRP is altered under conditions mimicking an inflammatory milieu and this non-native CRP also binds to immobilized/aggregated/pathogenic proteins. Experiments in mice have revealed that one of the functions of CRP is to protect against pneumococcal infection. For protection, CRP must be injected into mice within two hours of administering pneumococci, thus, CRP is protective against early-stage infection but not against late-stage infection. It is unknown how CRP protects or why CRP does not protect against late-stage infection. The hypotheses are that the protection requires complement activation by CRP-pneumococci complexes and that CRP cannot protect if pneumococci have time to recruit complement inhibitor factor H on their surface to become complement attack-resistant. To test these hypotheses, we generated CRP mutants by site-directed mutagenesis: a mutant that binds to pneumococci but does not activate complement and a mutant that binds to immobilized factor H. We found that mutant CRP incapable of activating complement was not protective against infection and that mutant CRP capable of binding to factor H was protective against both early and late stage infections. Additional experiments showed that CRP enhances the effects of the antibiotic clarithromycin in reducing bacteremia in infected mice. Moreover, we observed that mutant CRP capable of binding to factor H bound to several proteins immobilized on plastic, suggesting that CRP recognizes a pattern, probably an amyloid-like structure, on immobilized proteins. Indeed, mutant CRP, after binding to amyloid b peptides, prevented the formation of pathogenic amyloid fibrils. Lastly, employing a hepatic cell line, we investigated the mechanism of CRP expression in response to pro-inflammatory cytokines. We found that the transcription factor C/EBPb and two C/EBP-binding sites on the CRP promoter were critical for inducing CRP expression. We conclude that complement activation is necessary for CRP-mediated protection against infection, that CRP functions in two structural conformations, that CRP and clarithromycin act synergistically, that CRP has anti-amyloidogenic properties, and the increased CRP expression requires C/EBPb.

This study aims to increase knowledge of how the governance of environment work takes place within organizations from the perspective of managers and to investigate how the management of the work environment takes place from a pathogenic and a salutogenic perspective. A total of ten managers participated in the study, all of whom hold formal responsibility for management and governance of the work environment within each organization. The respondents work within different organizations with a large breadth in terms of type of business, industry but also in terms of number of employees. The empiric has been analyzed with the help of a deductive thematic analysis, the data has thus been analyzed on the basis of theories about control packages and the five control systems; cultural governance, planning, cybernetic governance, reward and compensation, and administrative governance. The analysis resulted in five themes; The cultural context, Planning of the work environment work, Accounting, follow-up and evaluation, Reward and compensation and Governing structures. The most prominent conclusion is that the governance of the work environment takes place through control packages where the various systems interact with each other. The control takes place to a greater extent through administrative control, control through planning and cultural control, and to a lesser extent based on cybernetic control and the use of reward as a means of control does not take place at all. The pathogenic perspective on the work environment in organizations dominates. Another conclusion is that a high degree of control in the work environment area gives managers increased security and clarity of role, which leads to the work environment being perceived as good. Managers who experience a low degree of control see a need for additional control, while the opposite applies to managers with a high degree of control. / Denna studie syftar till att öka kunskapen om hur styrningen av arbetsmiljöarbetet sker inom organisationer utifrån chefers perspektiv samt att undersöka hur styrningen av arbetsmiljön sker utifrån ett patogent och ett salutogent perspektiv. Totalt medverkade tio chefer i studien som alla innehar ett formellt ansvar för styrning och arbetsmiljöarbete inom respektive organisation. Respondenterna arbetar inom olika organisationer med en stor bredd gällande typ av verksamhet, bransch men även avseende antal medarbetare. Empirin har analyserats med hjälp av en deduktiv tematisk analys, datan har därmed analyserats med utgångspunkt i teorier kring styrpaket och de fem styrsystemen; kulturstyrning, planering, cybernetisk styrning, belöning och kompensation samt administrativ styrning. Analysen resulterade i fem teman: Den kulturella kontexten, Planering av arbetsmiljöarbetet, Redovisning, uppföljning och utvärdering, Belöning och kompensation samt Styrande strukturer. Den mest framträdande slutsatsen är att styrningen av arbetsmiljöarbete sker genom styrpaket där de olika systemen samverkar med varandra. Styrningen sker i högre grad genom administrativ styrning, styrning genom planering samt kulturstyrning och i lägre grad utifrån cybernetisk styrning och användandet av belöning som styrmedel sker inte alls. Det patogena perspektivet på arbetsmiljöarbete dominerar. Ytterligare en slutsats är att en hög grad av styrning på arbetsmiljöområdet ger chefer en ökad trygghet och rollklarhet vilket leder till att arbetsmiljön upplevs som god. Chefer som upplever en låg grad av styrning ser behov av ytterligare styrning medan det motsatta gäller chefer med hög grad av styrning.

M. Tech. (Department of Biotechnology, Faculty of Applied and Computer Science), Vaal University of Technology. / Influenza-A virus is a single stranded negative sense RNA virus that is a member of a Orthomyxoviridae group. The virus is diverse and consists of 16 haemagglutinin (H) and 9 neuraminidase (N) glycoproteins subtypes that form a serotype. Avian influenza virus (AIV) has been detected in more than 100 bird species from 26 different families, although Anseriformes and Charadriiformes are considered the natural hosts of the virus. A 12-month study was conducted at the African Pride Irene Country Club lodge in Pretoria where the prevalence of AIV was monitored in a community of wild birds. The African Pride Irene Country Club lodge houses a population of wild bird species such as Egyptian geese (Alopochen aegytptiaca), Yellow-billed duck (Anas undulata), Red knobbed coot (Fulica cristata), African sacred ibis (Threskiornis aethiopicus) and Hadeda ibis (Bostrycha hagedash). A total of 3674 faecal samples were collected over a period of 12 months and screened for AIV group using the Matrix gene (M-gene) real time reverse-transcriptase PCR (rRT-PCR). Positive samples were submitted for virus isolation in embryonated chicken eggs. In addition, the RNAs were screened using H5 and H7 subtype specific rRT-PCR and a conventional universal RCR assay that targets the HA gene was also used. Polymerase Chain Reaction (PCR) products were requenced using Sanger sequencing and the viral isolates were subjected to Next Generation sequencing (NGS). Twenty percent of the samples tested positive for the AIV group and four virus subtypes were identified. One virus isolate was identified through NGS as H3N6; two through conventional PCR and Sanger sequencing as H9Nx and H6Nx. Of the twenty percent samples that tested positive for AIV 98% were identified as H7Nx by subtype specific through rRT-PCR. The highest frequency of AIV positive samples was detected between the months of January and February 2017 (20%), with smaller peaks detected in february and March 2016 (0.3%). Lower peaks were also detected between the months July and November 2016 (0.1%), respectively. A high prevalence of AIV was detected in the late summer months with a frequency of 65% positive, although a low prevalence was also detected in the autumn (0.6%) winter (0.6%) and spring 0.08%). Thus, the study provides a valuable insight into the seasonal prevalence of AIV in a heterogeneous wild duck population in Gauteng Province.

Streptococcus pneumoniae (S. pneumoniae) is a Gram-positive, encapsulated bacterium capable of causing significant morbidity and mortality throughout the world. A hallmark of S. pneumoniae infection is infiltration of neutrophils (PMNs) that assist in controlling the spread infection but may also contribute to pathology. Paradoxically, studies have shown that limiting PMN infiltration into the lumen of the lung during infection actually betters clinical outcome in experimental S. pneumoniae infection. The final step in PMN luminal trafficking is a Hepoxilin A3 (HXA3)-dependent migration across the pulmonary epithelium. HXA3 is a PMN chemoattractant that forms gradients along the polarized epithelial face, drawing PMNs from the basolateral to the apical surface during proinflammatory responses. HXA3 requires assistance of an integral- membrane protein transporter to escape the cell and form the gradient. The pulmonary HXA3 transporter is currently unidentified. In this work, we identify the pulmonary HXA3 transporter as the ATP-Binding Cassette Transporter (ABC transporter) Multi-drug Resistance Associated Protein 2 (ABCC2, MRP2). We demonstrate that MRP1 and MRP2 are divergent ABC- transporters that control transepithelial PMN migration through efflux of a distinct anti-inflammatory substance and the pro-inflammatory HXA3 in the context of Streptococcus pneumoniae infection. Enrichment of MRP2 on the plasma membrane requires detection of the bacterial virulence factors pneumolysin (PLY) and hydrogen peroxide. PLY and hydrogen peroxide not only coordinate MRP2 apical membrane enrichment but also influence HXA3-dependent PMN transepithelial migration. They influence migration through stimulation of epithelial intracellular calcium increases that are crucial for HXA3 production as well as MRP2 translocation to the plasma membrane. PLY and hydrogen peroxide are not sufficient in their signaling alone, however, and require at least one additional bacterial signal to induce HXA3/MRP2 proinflammatory activities.

京都大学 / 0048 / 新制・課程博士 / 博士(生命科学) / 甲第21403号 / 生博第404号 / 新制||生||53(附属図書館) / 京都大学大学院生命科学研究科高次生命科学専攻 / (主査)教授 垣塚 彰, 教授 HEJNA,James, 教授 渡邊 直樹 / 学位規則第4条第1項該当 / Doctor of Philosophy in Life Sciences / Kyoto University / DFAM

Microcystin-LR is a hepatotoxin produced by cyanobacteria. Aeromonas hydrophila and Edwardsiella piscicida infections are leading causes of losses in market-sized channel catfish (Ictalurus punctatus). These older fish should have natural immunity in place and a predisposing factor is likely a prerequisite for these disease outbreaks. While microcystin-LR rarely causes mortality in warm-water aquaculture, we believe it may be a predisposing factor that leads to bacterial disease outbreaks during the summer months due to its ability to damage the liver. Our study investigated microcystin-LR’s effects on channel catfish susceptibility to these pathogens. We found that a sublethal dose of microcystin-LR induced substantial damage to multiple immune organs. In our challenges with both the toxin and bacteria, we saw a significant increase in mortality of fish. Our findings suggest that microcystin-LR increases channel catfish susceptibility to Aeromonas hydrophila and Edwardsiella piscicida infections.