Staphylococcus aureus resistente à meticilina (MRSA, Methicillin-Resistant Staphylococcus aureus) é um dos principais responsáveis por infecções nosocomiais, sendo identificado também em infecções associadas à comunidade. Embora potentes fármacos anti-estafilocócicos estejam disponíveis, as infecções causadas por este patógeno continuam a apresentar significativa morbidade e mortalidade devido ao aparecimento de cepas com resistência a múltiplos fármacos, incluindo vancomicina e teicoplanina. Compostos 5-nitro-heterocíclicos com estrutura análoga à nifuroxazida, antimicrobiano utilizado em infecções gastrintestinais, têm apresentado satisfatória atividade in vitro frente a estas cepas multirresistentes, sendo importante e necessária a avaliação de sua biodisponibilidade oral como próximo estágio no desenvolvimento de um novo fármaco, visando à seleção eficiente e ao aprimoramento da estrutura molecular. Neste contexto, o presente estudo tem por objetivo empregar ensaios in vitro, utilizando células Caco-2, e métodos in silico, utilizando descritores moleculares VolSurf, a fim de analisar a permeabilidade de análogos à nifuroxazida com atividade antimicrobiana apresentando, principalmente, atividade potencial frente a cepas multirresistentes de S. aureus. Empregou-se o método de MTT (brometo de 3-(4,5-dimetiltiazol-2-il)-2,5-difenil tetrazólio) para a avaliação da citotoxicidade. Nos estudos de permeabilidade in vitro foram utilizadas membranas de células Caco-2 cultivadas em placas Transwel® por 21 dias. A quantificação das frações permeadas foi realizada por cromatografia a líquido de alta eficiência com detecção UV (CLAE-UV), com métodos validados de acordo com a Resolução 899/03. Os estudos in silico foram realizados por meio de análise exploratória, pelo método de consenso de análise de componentes principais (CPCA, Consensus Principal Component Analysis), e análise de regressão, por quadrados mínimos parciais (PLS, Partial Least Squares). As células Caco-2 apresentaram viabilidade adequada para a realização dos estudos de permeabilidade frente a todos os derivados da nifuroxazida, exceto o derivado MeTIO (5-nitro-2-tiofilideno 4-metilbenzidrazida). Os valores de permeabilidade aparente (Papp) obtidos para os análogos à nifuroxazida indicam que estes possuem alta permeabilidade. Os modelos obtidos por CPCA e PLS foram capazes de separar as moléculas em grupos de compostos de baixa, média e alta permeabilidade, sendo os análogos à nifuroxazida classificados como compostos de alta permeabilidade. Para os compostos em estudo, as propriedades determinantes da permeabilidade através de células Caco-2, de acordo com os modelos, seriam de natureza topológica e estérica, sendo possível a previsão externa qualitativa e quantitativa da permeabilidade através de células Caco-2. / Methicillin-resistant Staphylococcus aureus (MRSA) is one of the main pathogens responsible for nosocomial infections, also identified in community-associated infections. Although potent anti-staphylococcal drugs are available, infections caused by this bacteria continues to show significant morbidity and mortality due to the emergence of strains with resistance to multiple drugs, including vancomycin and teicoplanin. The 5-nitro-heterocyclic derivatives of nifuroxazide, which is an antimicrobial used to treat gastrointestinal infections, have shown satisfactory in vitro activity against multidrug-resistant strains of S. aureus. As a next step in the development of a new drug, it is important and necessary the evaluation of the oral bioavailability to achieve an efficient selection and refinement of the molecular structure. In this context, this study aims to develop in vitro assays through Caco-2 cells, and in silico approaches, using VolSurf molecular descriptors, in order to analyze the permeability of 5-nitro-heterocyclic compounds analogues to nifuroxazide with antimicrobial activity, especially showing promising activity against multidrug-resistant Staphylococcus aureus. The MTT (bromide 3-(4,5-dimethyltiazol-2-yl)-2,5-diphenyl tetrazolium) method was employed to perform the cytotoxicity evaluation. Caco-2 cell monolayers cultivated for 21 days in Transwel® plates were used for the in vitro permeability assays. The quantification of the permeated fractions was done by High Performance Liquid Chromatography with UV detection (HPLC-UV), with validated methods according to the Resolution 899/03. In silico studies were performed through exploratory analysis by consensus principal component analysis (CPCA) and regression analysis by partial least squares (PLS). Caco-2 cells showed suitable cell viability for the permeability studies against all nifuroxazide analogues except the MeTIO (5-nitro-2-thiophilydene 4-methylbenzidrazide). The nifuroxazide derivatives apparent permeability values (Papp) obtained indicate these are high permeable compounds. The models obtained by CPCA and PLS were able to separate the molecules into groups of low, medium and high permeabilities, and the nifuroxazide analogues were classified as high permeable substances. The identified properties for the permeability through Caco-2 cells to the studied compounds were topologic and sterical, and it is possible to perform qualitative and quantitative external predictions with these models for the permeability through Caco-2 cells.

L’argilite du COx a été choisie comme roche hôte pour le stockage des déchets radioactifs de haute activité et vie longue (HAVL) en France. Ce matériau subira l'intrusion de gaz et d'eau sous, parfois, des conditions thermiques sévères. Par conséquent, afin d'évaluer la sécurité de cette barrière naturelle, il est très important de comprendre les propriétés poromécaniques et de transfert de ce matériau ainsi que l’effet de la température. Ce travail aborde les mesures au gaz du coefficient de Biot et montrent que celui-ci est presque égal à 1 en conditions humides. Il y a cependant sur le matériau sec un effet de l'adsorption du gaz et une déformation supplémentaire de gonflement du matériau. Cet effet a aussi un effet important sur les propriétés de transfert du gaz selon sa nature. Les propriétés de transfert et de saturation ont été examinées par des techniques gaz et comparées aux mesures usuelles. Les essais montrent aussi que la perméabilité à l'eau de site est d'environ 10-20 - 10-21 m² et beaucoup plus faible que celle au gaz. Enfin, on constate que le coefficient de Biot n'est pas affecté significativement par les effets thermiques mais que ces effets jouent sur la perméabilité relative au gaz de l'argilite / COx argillite has been selected as the host rock for the storage of high-activity long-live (HALL) radioactive waste in France. It will suffered the gas and water intrusion, sometimes suffered the severe thermal conditions during the sealing process. Therefore, in order to evaluate the safety of this natural barrier, it is very important to understand the poromechanical properties and transport properties of this material as well as the thermal effects. This work use gas to measure Biot’s coefficient and shows that it is nearly equal to 1 in humid conditions. However, there is a gas adsorption and induced an additional swelling deformation on dry material, this effect also has a significant effect on the transport properties of the gas according to its nature. The transport and saturation properties were examined by gas technique and compared with the usual measurements. The tests also show that the permeability of in situ water is about 10-20-10-21 m² and much lower than gas. Lastly, it is found that Biot’s coefficient is not significantly affected by the thermal effect, but the relative gas permeability of argillite is significantly affected by this effect.

Staphylococcus aureus resistente à meticilina (MRSA, Methicillin-Resistant Staphylococcus aureus) é um dos principais responsáveis por infecções nosocomiais, sendo identificado também em infecções associadas à comunidade. Embora potentes fármacos anti-estafilocócicos estejam disponíveis, as infecções causadas por este patógeno continuam a apresentar significativa morbidade e mortalidade devido ao aparecimento de cepas com resistência a múltiplos fármacos, incluindo vancomicina e teicoplanina. Compostos 5-nitro-heterocíclicos com estrutura análoga à nifuroxazida, antimicrobiano utilizado em infecções gastrintestinais, têm apresentado satisfatória atividade in vitro frente a estas cepas multirresistentes, sendo importante e necessária a avaliação de sua biodisponibilidade oral como próximo estágio no desenvolvimento de um novo fármaco, visando à seleção eficiente e ao aprimoramento da estrutura molecular. Neste contexto, o presente estudo tem por objetivo empregar ensaios in vitro, utilizando células Caco-2, e métodos in silico, utilizando descritores moleculares VolSurf, a fim de analisar a permeabilidade de análogos à nifuroxazida com atividade antimicrobiana apresentando, principalmente, atividade potencial frente a cepas multirresistentes de S. aureus. Empregou-se o método de MTT (brometo de 3-(4,5-dimetiltiazol-2-il)-2,5-difenil tetrazólio) para a avaliação da citotoxicidade. Nos estudos de permeabilidade in vitro foram utilizadas membranas de células Caco-2 cultivadas em placas Transwel® por 21 dias. A quantificação das frações permeadas foi realizada por cromatografia a líquido de alta eficiência com detecção UV (CLAE-UV), com métodos validados de acordo com a Resolução 899/03. Os estudos in silico foram realizados por meio de análise exploratória, pelo método de consenso de análise de componentes principais (CPCA, Consensus Principal Component Analysis), e análise de regressão, por quadrados mínimos parciais (PLS, Partial Least Squares). As células Caco-2 apresentaram viabilidade adequada para a realização dos estudos de permeabilidade frente a todos os derivados da nifuroxazida, exceto o derivado MeTIO (5-nitro-2-tiofilideno 4-metilbenzidrazida). Os valores de permeabilidade aparente (Papp) obtidos para os análogos à nifuroxazida indicam que estes possuem alta permeabilidade. Os modelos obtidos por CPCA e PLS foram capazes de separar as moléculas em grupos de compostos de baixa, média e alta permeabilidade, sendo os análogos à nifuroxazida classificados como compostos de alta permeabilidade. Para os compostos em estudo, as propriedades determinantes da permeabilidade através de células Caco-2, de acordo com os modelos, seriam de natureza topológica e estérica, sendo possível a previsão externa qualitativa e quantitativa da permeabilidade através de células Caco-2. / Methicillin-resistant Staphylococcus aureus (MRSA) is one of the main pathogens responsible for nosocomial infections, also identified in community-associated infections. Although potent anti-staphylococcal drugs are available, infections caused by this bacteria continues to show significant morbidity and mortality due to the emergence of strains with resistance to multiple drugs, including vancomycin and teicoplanin. The 5-nitro-heterocyclic derivatives of nifuroxazide, which is an antimicrobial used to treat gastrointestinal infections, have shown satisfactory in vitro activity against multidrug-resistant strains of S. aureus. As a next step in the development of a new drug, it is important and necessary the evaluation of the oral bioavailability to achieve an efficient selection and refinement of the molecular structure. In this context, this study aims to develop in vitro assays through Caco-2 cells, and in silico approaches, using VolSurf molecular descriptors, in order to analyze the permeability of 5-nitro-heterocyclic compounds analogues to nifuroxazide with antimicrobial activity, especially showing promising activity against multidrug-resistant Staphylococcus aureus. The MTT (bromide 3-(4,5-dimethyltiazol-2-yl)-2,5-diphenyl tetrazolium) method was employed to perform the cytotoxicity evaluation. Caco-2 cell monolayers cultivated for 21 days in Transwel® plates were used for the in vitro permeability assays. The quantification of the permeated fractions was done by High Performance Liquid Chromatography with UV detection (HPLC-UV), with validated methods according to the Resolution 899/03. In silico studies were performed through exploratory analysis by consensus principal component analysis (CPCA) and regression analysis by partial least squares (PLS). Caco-2 cells showed suitable cell viability for the permeability studies against all nifuroxazide analogues except the MeTIO (5-nitro-2-thiophilydene 4-methylbenzidrazide). The nifuroxazide derivatives apparent permeability values (Papp) obtained indicate these are high permeable compounds. The models obtained by CPCA and PLS were able to separate the molecules into groups of low, medium and high permeabilities, and the nifuroxazide analogues were classified as high permeable substances. The identified properties for the permeability through Caco-2 cells to the studied compounds were topologic and sterical, and it is possible to perform qualitative and quantitative external predictions with these models for the permeability through Caco-2 cells.

<p>Drug transport across the intestinal epithelium is roughly predicted from permeability values obtained from Caco-2 cell monolayers. This thesis examines the important role of <i>pH</i> and extracellular additives for increasing the reliability and predictivity of the <i>in vitro</i> screening system, Caco-2.</p><p>It was shown that the passive transport of ionizable compounds may be biased by a false efflux or uptake component, when applying a physiological <i>pH</i>-gradient across the membrane. <i>pH</i> also affected the amount of compound available at the transporter-binding site. Therefore, <i>pH</i> dependence should be considered in studies of such compounds and of drug-drug interactions involving efflux transporters. It was also shown that proton-dependent apical uptake or basolateral efflux should be studied both with and without a <i>pH</i> gradient over the whole monolayers. </p><p>The two extracellular additives, bovine serum albumin (BSA) and the solubilizing agent, Cremophor^® EL, also influenced Caco-2 permeabilities. BSA applied to the receiver side increases, and to the donor side decreases drug permeation according to the drug’s protein binding capacity. Thus, the absorptive transport for both passive and active compounds is favoured, giving a physiologically sound improvement of the Caco-2 cell model. Inclusion of BSA increased both the predictivity and quality of permeability studies, particularly of highly lipophilic, BCS class II compounds. Passive and active transport processes could also be distinguished after accounting for unbound concentrations. The overall effect of Cremophor^® EL on the permeability to a drug was compound-specific and probably dependent on micellar incorporation. Cremophor^® EL can therefore not be recommended. </p><p>Neither <i>pH</i> nor BSA affect the functionality of transporters such as P-glycoprotein. However, efflux ratios of ionizable or protein bound drugs are altered in the presence of a <i>pH</i>-gradient or BSA, indicating that an experimental system without protein or <i>pH</i> gradient can over- or underestimate active and passive efflux in drug transport.</p>

The design, modeling, fabrication, and validation of an optical magnetic response in dielectric-based metamaterials are studied. These metamaterials consist of either periodic or random arrays of dielectric particle inclusions, which may be spheres, coated spheres, or completely randomly shaped. It is demonstrated that because of the simple particle shapes and dielectric materials, these metamaterials are quite easy and feasible to implement in a bulk, three-dimensional sample, and the response is isotropic. This in is contrast to other predominant designs of optical metamaterials, which are planar and anisotropic arrays of complicated metallic fishnet or split-ring resonator structures, which require stringent tolerances and sophisticated assembly. It is shown that SiC is one of many materials from which such infrared magnetic metamaterials can be constructed. A simple SiC powder is used to verify these claims. The milled micropowder of crystalline SiC is comprised of particles of random shapes and sizes. A model of the electromagnetic response of such powders is developed, whereby the induced magnetic dipole response is modeled by equivalently-sized spheres of SiC, whereas the electric dipole response is modeled by a continuous distribution of ellipsoidal particles. Infrared spectroscopic measurements and numerical calculations are performed, verifying both the magnetic and electric response of the powder. A alternate approach is also described, where uniform SiC microspheres are fabricated using more sophisticated nanochemical techniques. In the final portion of the dissertation, the mutual near-field coupling between ideal magnetic dipoles induced in dielectric spheres is studied. This is implemented for microwave frequencies using large permittivity ceramic spheres. An approximate coupled dipole model of the multiple scattering among the spheres is developed, and a transition matrix method is implemented to calculate the exact scattering by the clusters. Experimental measurements are performed, confirming the two models. The results for pairs, chains, and rings of spheres indicates that the magnetic dipole modes hybridize in analogy to atomic bonding. A notable result is that certain hybridized magnetic dipole modes may have a net electric dipole moment. The similarity to atomic and molecular bonding should prove useful in conceptualizing and designing more sophisticated metamaterials.

The design, modeling, fabrication, and validation of an optical magnetic response in dielectric-based metamaterials are studied. These metamaterials consist of either periodic or random arrays of dielectric particle inclusions, which may be spheres, coated spheres, or completely randomly shaped. It is demonstrated that because of the simple particle shapes and dielectric materials, these metamaterials are quite easy and feasible to implement in a bulk, three-dimensional sample, and the response is isotropic. This in is contrast to other predominant designs of optical metamaterials, which are planar and anisotropic arrays of complicated metallic fishnet or split-ring resonator structures, which require stringent tolerances and sophisticated assembly. It is shown that SiC is one of many materials from which such infrared magnetic metamaterials can be constructed. A simple SiC powder is used to verify these claims. The milled micropowder of crystalline SiC is comprised of particles of random shapes and sizes. A model of the electromagnetic response of such powders is developed, whereby the induced magnetic dipole response is modeled by equivalently-sized spheres of SiC, whereas the electric dipole response is modeled by a continuous distribution of ellipsoidal particles. Infrared spectroscopic measurements and numerical calculations are performed, verifying both the magnetic and electric response of the powder. A alternate approach is also described, where uniform SiC microspheres are fabricated using more sophisticated nanochemical techniques. In the final portion of the dissertation, the mutual near-field coupling between ideal magnetic dipoles induced in dielectric spheres is studied. This is implemented for microwave frequencies using large permittivity ceramic spheres. An approximate coupled dipole model of the multiple scattering among the spheres is developed, and a transition matrix method is implemented to calculate the exact scattering by the clusters. Experimental measurements are performed, confirming the two models. The results for pairs, chains, and rings of spheres indicates that the magnetic dipole modes hybridize in analogy to atomic bonding. A notable result is that certain hybridized magnetic dipole modes may have a net electric dipole moment. The similarity to atomic and molecular bonding should prove useful in conceptualizing and designing more sophisticated metamaterials.

The prediction of moisture and contaminant transport through unsaturated soil to ground water is becoming increasingly important in the fields of hydrology, agriculture and environmental engineering. Computer aided simulation techniques enables one to conduct a series of systematic numerical experiments to analyze flow phenomenon in subsurface hydrology under various physical and chemical processes. The flow movement depends upon medium characteristics, initial and boundary conditions, which reflect, physical processes occurring below the ground. To understand the effects of physical process an efficient and accurate model is needed. Thus the model developed must be able to handle varied initial and boundary conditions. In this regard, infiltration into a very dry soil becomes a very important problem of study. Most of the earlier numerical models developed are concentrated on the development of an efficient algorithm or the modelling of a particular process which govern the flow in unsaturated or saturated-unsaturated homogeneous medium. Not much work has been done on the analysis of variably saturated flow in layered soil medium. Models to simulate unsaturated flow through dry soils, especially through layered soils with varied boundary conditions are very limited. Further, not much studies have been reported in the literature on the prediction of seepage face development and the phreatic surface movement in variably saturated media with layering. These aspects are very important in determining the flow field and the discharge from the domain. A detailed literature review covering above aspects has been made and is reported in this thesis. In the present work, two dimensional numerical models to predict the movement of wetting front in unsaturated domain and the movement of the phreatic surface in homogeneous and layered porous media under various initial and boundary conditions are developed based on finite difference and finite volume techniques. These models can handle flow in both rectangular flow domains and radial flow domains. The initial condition settings include the handling of very dry soil medium without any transformation of the governing equation, handling of infiltration and constant head conditions at the boundaries under steady state as well as transient scenarios. The models are also able to handle various soil moisture characteristics which depict the nonlinear behaviour between hydraulic conductivity, moisture content and pressure head in a soil media. A mixed form of the governing partial differential equation is used in the present study as it leads to better mass conservation. The finite difference model uses a central difference approximation for the space derivatives and an Eulerian backward difference approximation for the time derivative. The fully implicit formulation is solved iteratively using Strongly Implicit Procedure after making Picard approximation for the highly nonlinear coefficients. The process of infiltration into an initially dry soil leads to the development of a steep wetting front. As the finite volume technique is naturally an upwind method, it is expected to play a positive role in modelling such processes accurately. Hence, a finite volume model is also developed by approximating the convective part using a MUSCL approach and a fully implicit central difference method for the diffusive part of the governing equation. The models developed are validated using both experimental data and numerical solutions for problems reported in the literature. The validation problems cover a wide range of physical scenarios such as: infiltration into a very dry soil, infiltration into a dry soil column with gravity drainage, development of water table mound, steady state drainage in a sand filled wedge shaped tank with seepage face development and transient seepage face development in a rectangular domain. Five test problems are used for the validation of the models. The developed models perform very well for the test problems considered, indicating the models' capability in handling such situations. The results obtained by using the present models for simulating flow through highly unsaturated (very dry) soils show that the models perform very well when compared with models which use transformation techniques to handle such problems. The performance of the present models in comparison with the experimental data and numerical models available in the literature show the suitability of the present models in handling such situations. The present models are also used to analyse various types of unsaturated flow problems with varying initial and boundary conditions. The boundary conditions considered are no flow and /or free flow conditions along the left, right and bottom boundaries with infiltration condition along a part of the top boundary. For the various cases considered in the present study, infiltration rate varies from 5 cm/day to 50cm/day through an initially very dry soil of -15000 cm pressure head in homogeneous and layered soils. Different types of soil media considered vary from sandy loam, loam and clay with horizontal and vertical layering of these soils. A total number of 14 cases are analysed. The results are discussed in terms of pressure head variation in the flow domain along with moisture redistribution for all the cases under consideration. It is observed from these studies that the infiltration rate play an important role on the wetting front movement through layered soils depending on the type of layering and the boundary conditions considered. The soil properties of various layers affect the movement of wetting front by changing the direction of movement. Even though the wetting front movement is predominantly vertical, there is a tendency for the wetting front to move in the horizontal direction as it moves from a coarse soil to fine soil. It is also observed that the vertical layering of soils with different hydraulic conductivity helps in redirecting the flow towards the bottom boundary through the neighboring coarser layers. As finite volume method is more suitable for simulating sharp fronts, it is expected to perform better than finite difference method for simulating infiltration into very dry soils. So, a comparison is made between the performance of these two models by using the above test problems. It is observed from these studies that the performance of both the models are same except that the finite volume method takes much more CPU time than the finite difference model. Considering the type of problems tested, it is observed that for modelling unsaturated and saturated-unsaturated flows, finite difference method is better in comparison to finite volume method. It may be due to the predominant diffusive characteristics of the governing equation even while modelling flow through very dry soils. Proper estimation of the seepage height is an important aspect in finding the discharge through the porous medium. It is observed from the literature that the use of a saturated flow model in such situations can lead to an underestimation of the discharge through the porous medium. This effect is more important when dealing with small dimension problems. It is also observed that various parameters which govern the moisture movement through saturated-unsaturated regions affect proper estimation of the seepage face height and there by discharge. Various factors like effect of boundary conditions, type of soil layering, problem dimension and aspect ratio on seepage face development and the associated phreatic surface formation is studied in the present work. It is seen from the present study that the seepage face development is more in rectangular flow domain than in radial flow domain for both homogeneous and layered soils. It is also seen that the seepage face development in rectangular problems are more sensitive than radial flow problems for various factors considered. The seepage height is also influenced by the tail water level. It is seen from the present study that as the tail water level increases the seepage face reduces with no seepage face development for some of the cases studied. This influence is relatively less for radial flow problems. As the length of the domain increases the seepage height decreases. It is seen that for different cases with same horizontal dimension, as the height of the domain increases the seepage face height also increases. This phenomenon is observed for both homogeneous and layered soil medium. The influence of the aspect ratio, which is the ratio of the length to height of the domain indicate that as the aspect ratio increases the seepage height decreases. The type of the soil layering is observed to have a very strong influence on the seepage face development. The study for understanding the effect of soil layering on the development of seepage face and phreatic surface suggest that as the coarseness of the material increases, the phreatic surface become flatter and its steepness increases with the fineness of the soil. The present model is also used for studying the transient phreatic surface movement and the seepage face development. This is studied for homogeneous and layered rectangular soil medium. The present study is used to understand the effect of specific storage on the phreatic surface movement and the seepage face development. The studies indicate that the influence of specific storage on the seepage face development is insignificant in homogeneous soils with only very little effect in the early time for longer domains. It is also observed that the influence of the specific storage is significant in the case of layered soils. This effect depends on the type of layering and the problem dimension and is observed to have influence for relatively longer period. This observation suggests the importance of specific storage on transient seepage face development. When the specific storage effect is considered the drainage of the soil become faster resulting in a faster decline of the phreatic surface with time. The influence of specific storage is also studied considering the problem dimension effect. It is seen that as the aspect ratio increases, the effect of specific storage on the phreatic surface development decreases. The studies with change in the upstream boundary condition from a constant head to a no flow condition indicate that the effect of specific storage has no significant influence on the phreatic surface development for both homogeneous and layered soils.

This work explains the effect of failure on permeability anisotropy and dilation in sands. Shear failure is widely observed in field operations. There is incomplete understanding of the influence of shear failure in sand formations. Shear plane orientations are dependent on the stress anisotropy and that view is confirmed in this research. The effect of shear failure on the permeability is confirmed and calculated. Description of permeability anisotropy due to shear failure has also been discussed. In this work, three-dimensional discrete element modeling is used to model the behavior of uncemented and weakly cemented sand samples. Mechanical deformation data from experiments conducted on sand samples is used to calibrate the properties of the spherical particles in the simulations. Orientation of the failure planes (due to mechanical deformation) is analyzed both in an axi-symmetric stress regime (cylindrical specimen) and a non-axi-symmetric stress regime (right cuboidal specimen). Pore network fluid flow simulations are conducted before and after mechanical deformation to observe the effect of failure and stress anisotropy on the permeability and dilation of the granular specimen. A rolling resistance strategy is applied in the simulations, incorporating the stiffness of the specimens due to particle angularity, aiding in the calibration of the simulated samples against experimental data to derive optimum granular scale elastic and friction properties. A flexible membrane algorithm is applied on the lateral boundary of the simulation samples to implement the effect of a rubber/latex jacket. The effect of particle size distribution, stress anisotropy, and confining pressure on failure, permeability and dilation is studied. Using the calibrated micro-properties, simulations are extended to non-cylindrical specimen geometries to simulate field-like anisotropic stress regimes. The shear failure plane alignment is observed to be parallel to the maximum horizontal stress plane. Pore network fluid flow simulations confirm the increase in permeability due to shear failure and show a significantly greater permeability increase in the maximum horizontal stress direction. Using the flow simulations, anisotropy in the permeability field is observed by plotting the permeability ellipsoid. Samples with a small value of inter-granular cohesion depict greater shear failure, larger permeability increase and a greater permeability anisotropy than samples with a larger value of inter-granular cohesion. This is estimated by the number of micro-cracks observed. / text

Background: Our innate immunesystem protects us from infections but, since its methods is not all specific for microorganisms, may also induce collateral damage. Severe physical injury often proved deadly throughout evolution. Such injuries may induce massive collateral damage. Nowadays we can initiate advanced critical care for affected patients and save them from imminent trauma-related death. We are therefore faced with the fact that the collateral damage from the immune system may pose a major threat to the patient, the pathophysiology of which is not amenable to direct medical treatment and which leaves us with only passive supportive measures. In this thesis we investigated the role of leucocytes under such circumstances. Our main aim was to understand better the role of leucocytes in the development of increased vascular permeability after burns and trauma. More specifically we investigated the impact of an injury on the function of leucocytes such as the dynamic change of certain cell-surface receptors on the leucocytes and in their numbers and immature forms. We wanted to find out if the increased pulmonary vascular permeability after a burn could be mediated through heparin binding protein (HBP) released from granuloctes, and whether HBP could be used as a biomarker for respiratory failure after trauma. We also wanted to confirm the possible role of histamine as a mediator of the systemic increase in vascular permeability after burns. Methods: The dynamic change of cell-surface receptors was measured by flow-acquired cytometer scanning (FACS) on blood samples taken after burns. The concentrations of HBP after a burn and mechanical trauma were analysed in plasma. Pulmonary vascular permeability after a burn was assessed using transpulmonary thermodilution. The histamine turnover after a burn was assessed with high performance liquid chromatography (HPLC) for concentrations of histamine and methylhistamine in urine. Results: We confirmed earlier investigations showing altered expression of receptors on leucocytes after a burn, receptors intimately associated with leucocyte functions (study I). In a pilot study of 10 patients we measured plasma concentrations of HBP and found them to be increased soon after a burn (study II). This finding was not confirmed in a larger, more extensive and specific study of 20 patients. We did, however, find an association between alterations in the number of leucocytes soon after a burn and pulmonary vascular permeability, indicating that they had a role in this process (study III). In another study of trauma (non burn) we found an association between the concentration of HBP in early plasma-samples after injury and the development of ARDS, indicating that granulocytes and HBP have a role in its aetiology (study IV). We found a small increase in urinary histamine and normal urinary methylhistamine concentrations but had anticipated a distinct increase followed by a decrease after reading the current papers on the subject. This indicates that the role of histamine as a mediator of increased vascular permeability after burns may have been exaggerated (study V). Conclusions: We conclude that leucocytes are affected by burns and trauma, and it is likely that they contribute to the development of respiratory failure and acute respiratory distress syndrome (ARDS). HBP is a candidate biomarker for the early detection of ARDS after trauma, and the white blood count (WBC) is a useful biomarker for the detection of decreased oxygenation soon after a burn.

The application of current soy protein films are limited due to their low mechanical strength and high moisture sensitivity compared to synthetic materials. This research studied several methods to improve the mechanical properties [tensile strength (TS), elongation at break (EAB), Young’s modulus of elasticity (YM)] of solvent cast soy protein isolate (SPI) films. Drying times were significantly reduced through the use of a heated casting surface. Neutral (pH 7) SPI films were prepared but were found to have lower TS, EAB and YM than control films prepared under alkaline conditions. Cellulose was extracted from soybean wastes and transmission electron microscopy (TEM) verified the existence of nano-sized fibres. Composite SPI films were prepared using either extracted cellulose fibres or titanium dioxide (TiO2) nanoparticles and their mechanical and barrier properties (water vapour, and oxygen permeability) were evaluated under different relative humidity (RH) conditions. In general, TS and YM decreased and EAB increased with increasing RH. Films with 5% (w/w) added cellulose exhibited significant (p-value < 0.05) improvements in TS and YM but decreased EAB. TiO2 composites possessed similar TS, YM, and EAB values to control films. Barrier properties were comparable across all samples, and decreased with increasing RH. Samples were characterized using Fourier transform infrared (FTIR) spectroscopy, scanning electron microscopy (SEM), and atomic force microscopy (AFM). Preliminary work investigating synthesis of filler materials using cross-linked sodium alginate particles increased the TS and YM of SPI films to a similar extent as extracted cellulose. A method for electrospinning cellulose using ionic liquids was developed, but requires further process optimization to be used for fibre/filler synthesis. / OMAFRA; Hannam Soy Utilization Fund