Photosystem I (PSI) from plants, algae, and cyanobacteria can mediate H2 evolution in vivo and in vitro. A simple, self-platinization procedure that permits stable PSI-mediated H2 evolution in vitro has been developed. The H2 evolution capabilities of PSI from Thermosynechococcus elongatus have been characterized. This organism utilizes cytochrome c6 (cyt c6) as the e- donor to P700. Using a solution-based, self-organized platinization of the PSI nanoparticles, this study demonstrates a sodium ascorbate-cyt-PSI-Pt-H2 electron transport and proton reduction system that yields light-dependent H2. The system was thermostable with H2 evolution increasing up to 55°C. In addition, stability studies have shown the H2 evolution to be very stable, with no significant decrease over the 80 days investigated. Through simple optimization a H2 production rate of ~5.5 mol H2/h/mg Chl [micro-mole H2 per hour per milligram chlorophyll] was attained. To further optimize the H2 production Asc-cyt-PSI-Pt-H2 system, response surface methodology (RSM) was employed. The process parameter studied included temperature, light intensity and platinum salt concentration. The results showed that experimental data had a good fit to the proposed model (R2=0.99 and p < 0.001). Platinum salt concentration, temperature and the interaction between platinum salt concentration and temperature showed significant effects on the total H2 yield. Light intensity had minimal effect of the total H2 yield within the region studied. The optimum parameters for H2 photoproduction were light intensity of 240 μE/m2/s, [micro-eistien per square meter per second], platinum salt concentration of 636 μM [micro-mol/liter] and temperature of 310C. Finally, studies that will improve the H2 yield by increasing the kinetics of electron transfer were done. A hybrid protein was formed by engineering a gene to express a fusion of the membrane-bound [Ni-Fe] hydrogenase from Ralstonia eutropha H16 and the stromal-exposed subunits PsaE and PsaD of PSI from T. elongatus. A PsaE-free mutant of PSI was simultaneously formed by genetically disrupting the expression of the PsaE subunit of a native PSI; that will allow in vitro reconstitution of the desired PsaE-hydrogenase fusion protein with PsaE-free PSI.

Transient absorption spectroscopy was used to study light induced electron transfer processes in Type 1 photosynthetic reaction centers. Flash induced absorption changes were probed at 800, 703 and 487 nm, and on multiple timescales from nanoseconds to tens of milliseconds. Both wild type and menB mutant photosystem I reaction centers from the cyanobacterium Synechocystis sp. PCC 6803 were studied. Photosystem I reaction centers from the green algae Chlamydomonas reinhardtii, and the newly discovered chlorophyll-d containing organism Acaryochloris marina, were also studied. The flash induced absorption changes obtained for menB mutant photosystem I reaction centers are distinguishable from wild type at 800 nm. MenB mutant photosystem I reaction centers displays a large amplitude decay phase with lifetime of ~50 ns which is absent in wild type photosystem I reaction centers. It is hypothesized that this ~50 ns phase is due to the formation of the triplet state of primary electron donor.

Diss. (sammanfattning) Linköping : Linköpings universitet, 2006. / Härtill 5 uppsatser.

abstract: Photosystem I (PSI) is a multi-subunit, pigment-protein complex that catalyzes light-driven electron transfer (ET) in its bi-branched reaction center (RC). Recently it was suggested that the initial charge separation (CS) event can take place independently within each ec2/ec3 chlorophyll pair. In order to improve our understanding of this phenomenon, we have generated new mutations in the PsaA and PsaB subunits near the electron transfer cofactor 2 (ec2 chlorophyll). PsaA-Asn604 accepts a hydrogen bond from the water molecule that is the axial ligand of ec2B and the case is similar for PsaB-Asn591 and ec2A. The second set of targeted sites was PsaA-Ala684 and PsaB-Ala664, whose methyl groups are present near ec2A and ec2B, respectively. We generated a number of mutants by targeting the selected protein residues. These mutations were expected to alter the energetics of the primary charge separation event. The PsaA-A684N mutants exhibited increased ET on the B-branch as compared to the A-branch in both in vivo and in vitro conditions. The transient electron paramagnetic resonance (EPR) spectroscopy revealed the formation of increased B-side radical pair (RP) at ambient and cryogenic temperatures. The ultrafast transient absorption spectroscopy and fluorescence decay measurement of the PsaA-A684N and PsaB-A664N showed a slight deceleration of energy trapping. Thus making mutations near ec2 on each branch resulted into modulation of the charge separation process. In the second set of mutants, where ec2 cofactor was target by substitution of PsaA-Asn604 or PsaB-Asn591 to other amino acids, a drop in energy trapping was observed. The quantum yield of CS decreases in Asn to Leu and His mutants on the respective branch. The P700 triplet state was not observed at room and cryogenic temperature for these mutants, nor was a rapid decay of P700+ in the nanosecond timescale, indicating that the mutations do not cause a blockage of electron transfer from the ec3 Chl. Time-resolved fluorescence results showed a decrease in the lifetime of the energy trapping. We interpret this decrease in lifetime as a new channel of excitation energy decay, in which the untrapped energy dissipates as heat through a fast internal conversion process. Thus, a variety of spectroscopic measurements of PSI with point mutations near the ec2 cofactor further support that the ec2 cofactor is involved in energy trapping process. / Dissertation/Thesis / Doctoral Dissertation Biochemistry 2014

Die Multiexzitonen-Theorie des Anregungsenergie-Transfers in Farbstoff-Protein-Komplexen und biologischen Antennensystemen wird um den Prozess der Exziton-Exziton-Vernichtung erweitert. Um eine mikroskopische Beschreibung zu erzielen, wird eine Herangehensweise benutzt, die auf der Internen Konversion der Anregungsenergie innerhalb der Farbstoffmoleküle basiert. Diese Interne Konversion führt zu nicht strahlenden Übergängen von höheren zu niedrigeren Exziton-Mannigfaltigkeiten. Neben der Einbeziehung der Exziton-Exziton-Vernichtung beinhaltet die hier verwendete Multiexziton-Dichtematrixtheorie auch die Kopplung zu niedrig-energetischen Schwingungs-Freiheitsgraden und dem elektrischen Feld. Für den Übergang von der Zwei- zu der Einexzitonen -Mannigfaltigkeit werden exakte und genäherte Ausdrücke hergeleitet. Die erste Anwendung der erweiterten Multiexziton-Dichtematrixtheorie ist die Berechnung von ultra-schnellen differentiellen Absoptionsspektren. Um den Prozess der Exziton-Exziton-Vernichtung in intensitätsabhängigen differenziellen Absorptionsspektren näher zu untersuchen, wird diese Herangehensweise auf den B850 Ring des LH2 von rhodobacter sphaeroides angewendet. Die Bedeutung der Exziton-Exziton-Vernichtung und der Einfluss von statischer Unordnung werden detailiert diskutiert. Die Simulationen der differentiellen Absorptionsspektren mit statischer Unordnung und Orientierungsmittelung zeigen gute Übereinstimmung mit experimentellen Beobachtngen. Durch die Veröffentlichung der Strukturdaten des Photosystem I (PS1) von Synechococcus elongatus wurde es zum ersten Mal möglich, ein Exziton-Modell für die 96 Chorophyllmoleküle einzuführen, die in die Proteinmatrix dieses Antennensystems eingebettet sind. Das Ziel dabei ist, sowohl die linearen Spektren in einem weiten Temperaturbereich, als auch die zeitaufgelöste Fluoreszenz zu reproduzieren. Die Kopplungen und die Dipolmomente der Chlorophyllmoleküle wurden den Strukturdaten entnommen. Da die Energien der einzelnen Farbstoffe stark von deren unmittelbarer Umgebung abhängt, werden diese bestimmt, indem simulierte Absorption, Lineardichroismus und Zirkulardichroismus bei niedrigen Temperaturen den experimentellen Spektren angepasst werden. Nachdem einige Chlorophyllmoleküle den Zuständen mit den niedrigsten Energien zugeordnet wurden, werden die Energien mit Hilfe eines evolutionären Algorithmus angepasst. Die Qualität des PS1 Modells wird durch die Berechnung der zeitabhängigen Fluoreszenz untermauert (mit zusätzlicher inhomogener Linienbreite), die Simulationen stimmen gut mit aktuellen experimentellen Resultaten überein. Die oben erwähnten Exziton-Modelle beschreiben die jeweiligen Experimente erfolgreich. Der nächste Schritt ist, diese Modelle zu nutzen, um einen neuen Typ von Experiment vorzuschlagen, das Exciton-Steuerungs-Experiment. Auf dem Exciton-Modell des FMO Komplexes von Prosthecochloris aestuarii und dem oben erwähnten PS1 Modell von Synechococcus elongatus aufbauend wird die Bildung von exzitonischen Wellenpaketen durch Laser-Anregung studiert. Diese stellen eine kohärente Überlagerung exzitonischer Zustände dar, ähnlich der bei Schwingungs-Wellenpaketen. Um die spezielle Form des Femtosekunden-Laserpulses zu bestimmen, der zu einer räumlichen Lokalisierung der Anregungsenergie führt, wird die Theorie der optimalen Steuerung verwendet. Die Möglichkeit, solch einen lokalisierten Zielzustand zu erreichen, wird aufgezeigt, auch unter dem Einfluss von energetischer Unordnung und Exziton-Exziton Vernichtung. Ferner wird gezeigt, dass die Effizienz der Lokalisierung und die Länge des optimalen Pulses stark von der Temperatur abhängen. / The multi-exciton description of excitation energy transfer in chromophore complexes and biological light harvesting antenna systems is extended to include the exciton-exciton annihilation processes. To achieve a complete microscopic description the approach is based on intra--chromophore internal conversion processes which leads to non-radiative transitions from higher to lower lying exciton manifolds. Besides an inclusion of exciton-exciton annihilation the used multi-exciton density matrix theory also accounts for a coupling to low-frequency vibrational modes and the radiation field. Concentrating on transitions from the two- to the single-exciton manifold exact and approximate expressions for the annihilation rate are derived. A first application of the introduced extended multi-exciton density matrix theory is given by the computation of ultrafast transient absorption spectra. To elucidate the process of exciton-exciton annihilation in intensity dependent transient absorption data the approach is applied to the B850 ring of the LH2 found in rhodobacter sphaeroides. The signatures of exciton-exciton annihilation as well as the influence of static disorder are discussed in detail. The simulations of transient absorption including static disorder and orientational averaging are in good agreement with experimental data. The recently published structure of the Photosystem I (PS1) of Synechococcus elongatus made it for the first time possible to introduce an excitonic model for the 96 chlorophylls embedded in the protein matrix of that core-antenna system, as presented in this work. The challenge has been to reproduce linear frequency domain spectra in a wide temperature range as well as the time resolved fluorescence. The couplings and the dipole-moments of the chlorophylls are extracted from the x-ray crystal structure. Since the position of the energetic levels of the chlorophylls depend on the respective surrounding their determination is achieved by fitting low temperature absorption, linear dichroism and circular dichroism at the same time. After assigning some chromophores to the red-most states, an evolutionary algorithm is used to get the best fit. The quality of the resulting PS1 model (additionally accounting for inhomogeneous line broadening) is confirmed in calculating time dependent fluorescence spectra which show a good agreement with recent experimental results. The outlined method is also applicable to other photosynthetic antenna systems. The above described exciton models successfully explain the respective measurements. In a second step, they will be used to propose a new type of experiment, the exciton control experiment. Based on an exciton model for the FMO complex of Prosthecochloris aestuarii and the proposed PS1 model of Synechococcus elongatus one studies the laser pulse formation of excitonic wavepackets, i.e. a coherent superposition of excitonic states similar to vibrational wavepackets. Optimal Control theory is used to calculate the shape of femtosecond laser pulses that leads to a spatial localization of excitation energy. The possibility to populate such a localized target state is demonstrated, even in the presence of disorder or exciton-exciton annihilation, and it is shown that the efficiency of localization as well as the length the most suited pulses strongly depend on temperature.

In der vorliegenden Arbeit sind unterschiedliche Kopplungsstrategien des natürlichen Photosystems I (PSI) aus Cyanobakterium Thermosynechococcus elongatus mit verschiedenen Elektrodenoberflächen sowie Interaktion mit Nanomaterialien und Enzymen bearbeitet worden. Zum einen wurde gezeigt, dass die Immobilisierung des PSI auf modifizierten mehr-wandigen Kohlenstoffnanoröhrchen zur funktionalen Photobiohybridelektrode führt. Dabei wurde das PSI mit der Elektrode elektrisch mit Hilfe eines Redoxproteins, Cytochrom c (cyt c), verknüpft. Das System (PSI-cyt c) wurde auch auf eine dreidimensionale Elektrodenoberfläche des Metaloxids Indiumzinnoxid (eng. ITO) übertragen. Hierbei wurde zusätzlich die TransparenzEigenschaft solcher Oberflächen ausgenutzt. Die Präparation solcher transparenter Elektroden wurde optimiert, um höhere Photoströme zu generieren. Weiterhin wurde eine neue Methode der elektrischen Kontaktierung des PSI mit der Elektrode etabliert. Hierfür wurden Fullerene eingesetzt. Durch erhöhte molekulare Effizienz wurde gezeigt, dass Fullerene effektivere Elektronvermittler zwischen PSI und der Elektrode sind als das cyt c. Zusätzlich wurden im Rahmen dieser Doktorarbeit die photokatalytischen Eigenschaften von PSI mit den biokatalytischen Eigenschaften des Enzyms humane Sulphit Oxidase (hSOx) kombiniert. Hierbei wurde das Enzym als ein alternativer und effizienter Elektronzulieferer für PSI eingesetzt. Ein drittes Protein, das cyt c, fungierte als elektrisches Bindeglied und sicherte die elektrische Kommunikation zwischen den katalytischen Proteinen im System und der Elektrode. Die Komplexität des PSI sowie seine Kommunikation mit anorganischen Nanomaterialien und anderen komplexen Biomolekülen, wie z.B. Enzymen, zeigt ein großes Potential des Einsatzes von PSI-basierter Biohybriden in den Biotechnologien der Zukunft. / In this thesis, different strategies for coupling of the natural complex photosystem I from the cyanobacterium Thermosynechococcus elongatus with different electrode surfaces, and the interaction of PSI with nanomaterials and enzymes has been investigated. First, it was shown that immobilization of PSI on modified multi-walled carbon nanotubes (MWNT) leads to a functional photobiohybrid electrode. Here, PSI has been electrically wired to the electrode via a redox-active protein, cytochrome c (cyt c). The system (PSI-cyt c) has been scaled up to the three-dimensional surface of a metal-oxide, indium tin oxide (ITO). Here, additionally the high transparency property of this material has been exploited. The new preparation procedure of such transparent electrodes has been optimized in order to achieve high pohotocurrents. Furthermore, a new method of electric wiring of the PSI with the electrode has been established. Here, fullerenes have been employed. The high molecular efficiency of such a system proves that fullerenes are more effective wiring agents between the PSI and the electrode as compared to the cyt c. Additionally, in this thesis the photocatalytic property of the PSI has been combined with the biocatalytic property of the enzyme human sulphite oxidase, hSOx. Here, the enzyme has been employed as an alternative electron supplier for PSI. The third protein, cyt c, acted as an electric wiring agent and ensured electric communication between both catalytic proteins of the system and the electrode. The versatility of the PSI as well as its communication with anorganic nanomaterials and biological molecules, e.g. such as enzymes, shows a great potential for use of PSI-based biohybrids in the future biotechnological applications.

Background: Although our knowledge about diatom photosynthesis has made huge progress over the last years, many aspects about their photosynthetic apparatus are still enigmatic. According to published data, the spatial organization as well as the biochemical composition of diatom thylakoid membranes is significantly different from that of higher plants. Results: In this study the pigment protein complexes of the diatom Thalassiosira pseudonana were isolated by anion exchange chromatography. A step gradient was used for the elution process, yielding five well-separated pigment protein fractions which were characterized in detail. The isolation of photosystem (PS) core complex fractions, which contained fucoxanthin chlorophyll proteins (FCPs), enabled the differentiation between different FCP complexes: FCP complexes which were more closely associated with the PSI and PSII core complexes and FCP complexes which built-up the peripheral antenna. Analysis by mass spectrometry showed that the FCP complexes associated with the PSI and PSII core complexes contained various Lhcf proteins, including Lhcf1, Lhcf2, Lhcf4, Lhcf5, Lhcf6, Lhcf8 and Lhcf9 proteins, while the peripheral FCP complexes were exclusively composed of Lhcf8 and Lhcf9. Lhcr proteins, namely Lhcr1, Lhcr3 and Lhcr14, were identified in fractions containing subunits of the PSI core complex. Lhcx1, Lhcx2 and Lhcx5 proteins co-eluted with PSII protein subunits. The first fraction contained an additional Lhcx protein, Lhcx6_1, and was furthermore characterized by high concentrations of photoprotective xanthophyll cycle pigments. Conclusion: The results of the present study corroborate existing data, like the observation of a PSI-specific antenna complex in diatoms composed of Lhcr proteins. They complement other data, like e.g. on the protein composition of the 21 kDa FCP band or the Lhcf composition of FCPa and FCPb complexes. They also provide interesting new information, like the presence of the enzyme diadinoxanthin de-epoxidase in the Lhcx-containing PSII fraction, which might be relevant for the process of non-photochemical quenching. Finally, the high negative charge of the main FCP fraction may play a role in the organization and structure of the native diatom thylakoid membrane. Thus, the results present an important contribution to our understanding of the complex nature of the diatom antenna system.

This thesis describes an investigation of the molecular mechanism underlying solar conversion processes that occur in Type I photosynthetic reaction centers, in which P700 plays a central role. Static Fourier transform infrared (FTIR) difference spectroscopy (DS) was used to probe the electronic and structural organization of P700 and P700+. In combination with isotope labeling and site directed mutagenesis we have investigated how protein interactions such as histidine ligation and hydrogen bonding modulate this organization. Comparison of (P700+-P700) FTIR difference spectra (DS) obtained using wild type and mutant PS I led us to suggest that the 131 keto carbonyl group of PA is essentially free from hydrogen bonding in the ground state. Upon cation formation, this hydrogen bonding becomes stronger, probably because of a cation induced reorientation of the hydroxyl group of a nearby threonine residue. We also tentatively suggested that a difference band at 1639(-)/1660(+) cm-1 in (P700+-P700) FTIR DS might be due to a C=C mode of the imidazole side chain of the ligating histidine residues. Most of this thesis is geared towards investigating the validity of this interpretation. (P700+-P700) FTIR DS obtained using mutant PS I particles in which hydrogen bonding to P700 is altered can be reconciled within the context of our new interpretation. (P700+-P700) FTIR DS obtained using uniformly 2H, 15N, and 13C labeled PS I particles also support our new interpretation, and indicate that the difference band at 1639(-)/ 1660(+) cm-1 cannot be associated with a strongly hydrogen bonded keto carbonyl group of PA. To investigate if the imidazole side-chain of ligating histidine residues could contribute to bands in (P700+-P700) FTIR DS vibrational mode frequencies and intensities for several protonation forms of 4-methylimidazole were calculated. The calculations suggest that the 1639(-)/1660(+) cm-1 band in (P700+-P700) FTIR DS may not be due to a C=C mode of the imidazole side chain of the ligating histidine residues. Thus we have produced data that suggests neither of the proposed interpretations alone can adequately explain the origin of the 1639(-)/1660(+) cm-1 difference band in (P700+-P700) FTIR DS. The origin of the 1639(-)/1660(+) cm-1 difference band in (P700+-P700) FTIR DS is therefore still an open question.

The overall structure of photosynthetic pigment-protein complexes and thylakoid membranes of various photosynthetic organisms was studied using electron microscopy.

<p>Early processes following photon absorption by the photosynthetic pigment-protein complex photosystem I (PS I) have been the subject of decades of research, yet many questions remain in this area of study. Among the trickiest to investigate is the role of the PS I reaction center’s (RC’s) two accessory (A_‑1) chlorophyll (Chl) cofactors as primary electron donors or acceptors, oxidizing the special pair (P₇₀₀) of Chls or reducing a nominal primary electron acceptor (A₀) Chl in the first electron transfer step. Such processes, which occur on a picosecond timescale, have long been studied via ultrafast spectroscopy, though difficulty lies in distinguishing among signals from early processes, which have similar lifetimes and involve many identical pigments. In this work, we used steady-state and ultrafast optical pump-probe spectroscopies on PS I trimers from wildtype and mutant strains of the cyanobacterium <i>Synechocystis</i> sp. PCC 6803 in which an asparagine amino acid residue near A_‑1 had been replaced with methionine on one or both sides of the RC. We also conducted an identical set of experiments on mutants in which A₀ was similarly targeted, as well as studied the effects on the A₀ absorption spectrum of a third category of mutations in which a peripheral H‑bond to A₀ was lost. Steady-state absorption spectroscopy revealed that many of these mutations caused mild Chl deficiencies in the light-capturing antenna of PS I without necessarily preventing organisms’ growth. More importantly, we determined that contrary to certain hypotheses, A_‑1 is the most likely true first electron acceptor, as reasoned from observing rapid triplet state formation in double A_‑1 mutants. We also concluded from non-additive detrimental effects of single-side mutations that if one RC branch is damaged at the level of A₀ or A_‑1, electron transfer may be redirected along the intact branch. This may help explain the conservation of two functional RC branches in PS I over many generations of natural selection, despite the additional cost to organisms of manufacturing both.</p>