Au cours des dernières décennies, la popularité des plantes médicinales s’est accrue auprès des civilisations occidentales de sorte que la quantité de plantes récoltées, la plupart provenant de populations sauvages, a grandement augmenté. Dans ce contexte, l’objectif principal de mon mémoire est d’évaluer l’impact de la récolte de deux plantes médicinales (Sarracenia purpurea et Rhododendron groenlandicum) utilisées par la Nation Crie du Nord du Québec. Pour y parvenir, des parcelles expérimentales, simulant différentes intensités de récolte (S. purpurea) et différentes méthodes de récolte (R. groenlandicum), ont été mises en place, puis des suivis annuels de la reprise ont été réalisés. Les résultats obtenus suggèrent que les techniques de récolte chez R. groenlandicum devraient exclure les nouvelles pousses, leur exploitation causant une forte mortalité. Par ailleurs, chez S. purpurea, la récolte de 20 % des individus semble peu dommageable, mais critique lorsque plus de 50 % des plants sont récoltés. Un modèle démographique pour S. purpurea a aussi été construit à partir des observations de terrain. Ce modèle a permis de réaliser des projections temporelles en variant les taux de récoltes ainsi que les intervalles entre les récoltes. Les résultats indiquent qu’une récolte de 20 % des individus est acceptable une fois tous les 20 ans. Pour une récolte plus régulière, 5 % tous les trois ans serait soutenable. Mon projet permettra d’assurer une exploitation soutenable de deux plantes médicinales ayant un grand potentiel pour le traitement du diabète de type II. / Over the past few decades, the popularity and use of medicinal plants have increased in Western civilisation. Consequently, harvesting plants from wild populations has increased. Using this perspective, the principal goal of my thesis is to assess the impact of harvest on two medicinal plants (Sarracenia purpurea and Rhododendron groenlandicum) used by the Cree Nation of Northern Québec. To achieve my goal, the simulation of four harvesting intensities (S. purpurea) and of two harvesting methods (R. groenlandicum) were setup in experimental plots and an annual follow up were conducted on establishment and growth. Results show that harvesting methods used on R. groenlandicum should exclude new shoots, since their exploitation results in high mortality rates. For S. purpurea, harvesting of individuals does not seem harmful under 20% of harvest, but is critical when 50% or more are collected. Furthermore, a matrix population model of S. purpurea demography was built from field observations. This model was used to simulate population projection in time under different levels of harvest when varying the number of years between harvests. These results demonstrate that collecting 20% of individuals should be done only once every 20 years to remain sustainable. A more efficient and regular harvest of 5% every three years would be sustainable. My project allowed defining acceptable levels of harvest in order to insure sustainable exploitation of two Cree medicinal plants bearing interesting potential for treating type II diabetes related symptoms.

Mémoire numérisé par la Division de la gestion de documents et des archives de l'Université de Montréal

The thesis deals with variation in age and size at maturation in Saduria entomon and Pontoporeia affinis along a depth gradient in the Gulf of Bothnia, Sweden. I have analysed at what sizes and ages animals should mature in relation to growth and mortality conditions. The thesis also deals with predator-prey interactions within and between the two species. The isopod Saduria entomon matured during winter at an age of three years at 5 m depth in the Norrby archipelago (63° 30'N, 19° 50'E). Males matured eariier and at larger sizes (27-48 mm) than females (23-36 mm). The offspring were released in early summer. The adult size increased with increasing depth. Outside the archipelago, at 125 m depth, the sexes reached a size of 84 and 54 mm respectively. No evidence for temporal restriction in the release of the young was found at the deep area. The species was shown to have a high capacity for cannibalism on small conspecifics, although the small ones have the potential to avoid aggregations of large conspecifics. The number of small conspecifics eaten was related both to the absolute and relative densities of the alternative prey Pontoporeia affinis. The cannibalistic behaviour have the potential to act as a stabilizing mechanism in the Saduria-Pontoporeia system. Fourhom sculpin (Myoxocephalus quadricornis) was the fish species of utmost importance as a predator on S.entomon, and it mainly preferred large specimens. The amphipod Pontoporeia affinis matured at an age of two years in the littoral zone and at a very deep (210 m) locality. Between these depths it mainly reached maturation at an age of three years. In some years in densely populated areas, they delayed reproduction another year and reproduced as four year old. The variation in age at maturation in P.affinis in relation to depth could be quantitatively predicted by maximizing fitness in the Euler-Lotka equation. The size variation at maturation in S.entomon could be qualitatively predicted by maximizing fitness in the Euler-Lotka equation. The general condition for a smaller size at maturity to be adaptive at high temperatures (i.e. shallow areas) is that mortality rate should increase faster than growth rate with increasing temperature. When mortality is higher in young stages than in older and larger ones the pattern is also predicted when growth increases faster than mortality. Small animals may prefer warmer habitats than large ones, because of the presence of a size dependent trade-off between temperature induced growth and mortality. More exactly, the optimum solution of the trade-off between growth and mortality in hazardous environments was suggested to approach maximization of the expression s(W+g)/W, where s is survival rate, W is body weight, and g is growth rate. / <p>Diss. (sammanfattning) Umeå : Umeå universitet, 1990, härtill 6 uppsatser</p> / digitalisering@umu

This project predominantly investigated the implications of spatial heterogeneity in the ecological processes of competition and infection. Empirical analysis of spatial heterogeneity was carried out using the lepidopteran species Plodia interpunctella. Using differently viscous food media, it was possible to alter the movement rate of larvae. Soft Foods allow the movement rate of larvae to be high, so that individuals can disperse through the environment and avoid physical encounters with conspecifics. Harder foods lower the movement rate of larvae, restricting the ability of individuals to disperse away from birth sites and avoid conspecifics encounters. Increasing food viscosity and lowering movement rate therefore has the effect of making uniform distributed larval populations more aggregated and patchy. Different spatial structures changed the nature of intraspecific competition, with patchy populations characterised by individuals experiencing lower growth rates and greater mortality because of the reduced food and space available within densely packed aggregations. At the population scale, the increased competition for food individuals experience in aggregations emerges as longer generational cycles and reduced population densities. Aggregating individuals also altered the outcome of interspecific competition between Plodia and Ephestia cautella. In food media that allowed high movement rates, Plodia had a greater survival rate than Ephestia because the larger movement rate of Plodia allowed it to more effectively avoid intraspecific competition. Also the faster growth rate, and so larger size, of Plodia allowed it to dominate interspecific encounters by either predating or interfering with the feeding of Ephestia. In food that restricts movement, the resulting aggregations cause Plodia to experience more intraspecific encounters relative to interspecific, reducing its competitive advantage and levelling the survival of the two species. Spatial structure also affected the dynamics of a Plodia-granulosis virus interaction and the evolution of virus infectivity. Larval aggregation forced transmission to become limited to within host patches, making the overall prevalence of the virus low. However potentially high rates of cannibalism and multiple infections within overcrowded host aggregations caused virus-induced mortality to be high, as indicated by the low host population density when virus is presented. Also aggregated host populations cause the evolution of lower virus infectivity, where less infective virus strains maintain more susceptible hosts within the aggregation and so possess a greater transmission rate. The pattern of variation in resistance of Plodia interpunctella towards its granulosis virus was found using two forms of graphical analysis. There was a bimodal pattern of variation, with most individuals exhibiting either low or high levels of resistance. This pattern was related to a resistance mechanism that is decreasingly costly to host fitness.

This dissertation is concerned with effects dispersal and forest structure on forest insect population dynamics, and with identifying generating processes by comparing observed patterns to model predictions. In chapter 2, we investigated effects of changing forest landscape patterns on integro-difference models of host-parasitoid population dynamics. We demonstrated that removing habitat can increase herbivore density when herbivores don't disperse far, and parasitoids disperse further, due to differences in dispersal success between trophic levels. This is a novel potential explanation for why forest fragmentation increases the duration of forest tent caterpillar outbreaks. To better understand spatial model behaviour, we proposed a new local variation of the dispersal success approximation. The approximation successfully predicts effects of habitat loss and fragmentation on realistically complex landscapes, except when outbreak cycle amplitude is very large. Local dispersal success is useful in part because parameters can be estimated from widely available habitat data. In chapter 3, we investigated how well a discretized integro-difference model of mountain pine beetle population dynamics predicted the occurrence of new infestations in British Columbia. We found that a model with a large dispersal kernel, and high emigration from new, low severity infestations yielded the best predictions. However, we do not believe this to be convincing evidence that many beetles disperse from new, low severity infestations. Rather, we argued that differences in habitat quality, detection errors, and Moran effects can all confound dispersal patterns, making it difficult to infer dispersal parameters from observed infestation patterns. Nonetheless, predicting infestation risk is useful, and large kernels improve predictions. In chapter 4, we used generalized linear mixed models to characterize spatial and temporal variation in the propensity of jack pine trees to produce pollen cones, and account for confounding effects on the relationship between pollen cone production and previous defoliation by jack pine budworm. We found effects of stand age, and synchronous variation in pollen cone production among years. Accounting for background patterns in pollen cone production clarified that pollen cone production declines in with previous defoliation, as expected.

An object-oriented framework is presented for developing and simulating individual-based models of cell populations. The framework supplies classes to define objects called simulation channels that encapsulate the algorithms that make up a simulation model. These may govern state-updating events at the individual level, perform global state changes, or trigger cell division. Simulation engines control the scheduling and execution of collections of simulation channels, while a simulation manager coordinates the engines according to one of two scheduling protocols. When the ensemble of cells being simulated reaches a specified maximum size, a procedure is introduced whereby random cells are ejected from the simulation and replaced by newborn cells to keep the sample population size constant but representative in composition. The framework permits recording of population snapshot data and/or cell lineage histories. Use of the framework is demonstrated through validation benchmarks and two case studies based on experiments from the literature.

Se ha analizado las causas de la distribución espacial de la variabilidad genética del ADN mitocondrial en poblaciones de trucha común de la cuenca del Duero y de los Pirineos Orientales. En total se han analizado de novo 49 localidades, 13 en la cuenca del río Duero y 36 en los principales ríos del Pirineo oriental. Además se analizaron las fluctuaciones temporales en 14 de las localidades del Pirineo Oriental. Estudios previos indican un marcado contraste de los patrones de diversidad entre ambos territorios.En la cuenca del río Duero los análisis confirmaron la presencia de los dos linajes matriarcales descritos previamente, el linaje Atlántico (AT) y el linaje Duero (DU). Los análisis de la varianza molecular (AMOVA) siguiendo una jerarquía hidrográfica sugirieron una alta estructuración de las poblaciones coincidente con los patrones ictiológicos observados en la cuenca. El linaje DU parece haber estado presente permanentemente en la cuenca interior del Duero, mientras que las zonas más próximas a la desembocadura han padecido diversas colonizaciones de trucha del linaje AT, que reflejarían los cambios climáticos ocurridos en el Cuaternario. Se ha detectado una discrepancia en el límite entre ambos grupos definidos por genes nucleares (alozimas) y el ADN mitocondrial. Estas discrepancias pueden ser debidas a un efecto más severo de la deriva genética en el ADN mitocondrial que en los marcadores nucleares. Sin embargo, en este trabajo se han observado evidencias a favor de selección en el ADN mitocondrial del linaje DU que también explicaría estas discrepancias.El análisis más exhaustivo en las cuencas de los Pirineos orientales, permitió detectar nuevos haplotipos mitocondriales de los linajes Adriático (AD) y Mediterráneo (ME). En esta región, los AMOVAs confirmaron que las diferencias entre poblaciones dentro de río son más importantes que las diferencias entre ríos. No obstante se observó un patrón de aislamiento por distancia en toda la zona, reflejo de la estructuración de las poblaciones en la cuenca del río Ebro. Además, aunque los AMOVAs mostraron que el componente temporal de la variación es inferior al espacial, las fluctuaciones temporales en la comparación matriarcal de las poblaciones resultaron estadísticamente significativas. Estas fluctuaciones están asociadas tanto a la deriva genética como a procesos de flujo génico entre poblaciones próximas. Dentro de las cuencas, los componentes de diferenciación entre afluentes son, en general, superiores a los obtenidos dentro de cada afluente, patrón que parece estar extendido en la trucha común. Los estudios a escala microgeográfica en la Noguera Vallferrera y Noguera Cardós (afluentes del Noguera Pallaresa) reprodujeron este patrón de diferenciación. Los tamaños efectivos y la tasa de migración entre ambos ríos fueron similares a los descritos en poblaciones noratlánticas. Los tamaños efectivos de las hembras (Nef), calculados a partir del ADN mitocondrial fueron menos de la mitad del tamaño efectivo total tanto en la Noguera Vallferrera como en el resto de localidades pirenaicas estudiadas. Estos bajos tamaños efectivos de las hembras serían también responsables de las fluctuaciones temporales observadas. Los ejemplares repoblados parecen hibridar poco con los nativos, pero su presencia podría intensificar indirectamente los procesos de deriva genética y complicar la conservación de los patrimonios genéticos nativos.Con la salvedad de la existencia de selección que favorece a los haplotipos del linaje DU, los procesos poblacionales que regulan la distribución de la variabilidad genética en la cuenca del Duero y en los Pirineos Orientales podrían ser parecidos y caracterizados por la existencia de múltiples demes interconectados a lo largo del curso fluvial. / Brown trout populations from the River Duero basin and from Eastern Pyrenees rivers were analyzed to assess the reasons for contrasting patterns of genetic diversity. Altogether genetic diversity has been analyzed in 49 new collections, 13 from the River Duero basin and 36 from the main rivers of Eastern Pyrenees. Moreover, temporal samples from 14 Pyrenean locations were sampled to analyse temporal stability of the described structure. In these two areas previous studies indicated a strong contrast among diversity patterns in both territories. Results in the Duero basin confirmed the presence of the Atlantic (AT) and the Duero (DU) matriarchal lineages both previously described in this river basin. The analyses of molecular variance (AMOVA) based on the hydrographical hierarchy indicated a high level of population structuring, in accordance with the icthiological pattern observed in this basin. The DU lineage permanently occupied the internal area of the River Duero basin, whereas zones close to the mouth of the river have suffered diverse waves of colonisations of trout belonging to the AT lineage, which would reflect the changes happened in the Quaternary. Discrepancies in the limits between both groups defined by nuclear genes (allozymes) and mitochondrial DNA have been detected. These discrepancies could be due to a more intense effect of genetic drift in mitochondrial DNA than in nuclear markers. Nevertheless, evidences in favour of selection in the mitochondrial DNA of the DU lineage have been described in this work, which also would explain this discrepancy. A detailed analysis of brown trout populations from rivers in the Eastern Pyrenees detected new mitochondrial haplotypes of the Adriatic (AD) and the Mediterranean (ME) lineages. In this region, the AMOVAs indicated that differences between populations within river were larger than differences between rivers. Nevertheless, a pattern of isolation by distance was observed in the whole zone, reflecting population structure within the River Ebro. The AMOVAs showed that the temporal component of the variation is lower than the spatial component, but the temporal fluctuations in the matriarchal comparison of the populations were statistically significant. These fluctuations were associated to both genetic drift and gene flow among close populations. Generally in the river basins, higher differentiation between than within stream was observed. This pattern seems to be widespread in brown trout. The studies on microgeographical scale undertaken in the Noguera Vallferrera and Noguera Cardós (tributaries of Noguera Pallaresa) reproduced the above pattern of differentiation. Effective population sizes and migration rate between both rivers were similar to those described in North-Atlantic populations. In the Noguera Vallferrera as well as in the rest of Pyrenean populations, the female effective sizes (Nef), calculated from mitochondrial DNA were less than a half of the total effective sizes detected. These low female effective sizes also contribute to the observed temporal fluctuations. Hatchery individuals hybridise poorly with the native one, but its presence could indirectly intensify genetic drift and complicate the conservation of the native genetic resources.In spite of selection favouring haplotypes of the DU lineage, population processes controlling the distribution of genetic variability in the Duero and the Eastern Pyrenees river basins could be similar and characterized by the existence of interconnected multiple demes throughout the fluvial course.

After European settlement, Australian rangelands especially in South Australia underwent significant changes because of the main land use of pastoralism. Many studies have revealed that the plant communities are negatively effected by herbivory mainly by sheep. The main aim of this study is to separate the different effects of sheep, rabbits and kangaroos. This was examined by survey supported by experimental and modelling research. A 32,000 km² area previously surveyed by Tiver and Andrew (1997) in eastern South Australia was re-surveyed to monitor populations of perennial plant species at sites of various intensity of grazing by sheep, rabbits and kangaroos (goats populations are low in the study area), the most important vertebrate herbivores. Plant population data were collected in both sheep paddocks and historically ungrazed by sheep (road reserves) by using the Random Walk method and analyzed using Generalized Linear Modelling (GLM) to separate the effects of sheep and rabbits on plant regeneration and their regeneration in response to grazing. These data were also compared to similar data collected by Tiver and Andrew in 1992 (1997) to ascertain if the reduction in rabbit numbers through introduction of RCV had allowed increased regeneration. Regeneration of many species inside paddocks were negatively affected and species in roadside reserves neither did not significantly increase from 1992 to 2004. However, some species showed increase of populations in spite of sheep grazing, with some species being less susceptible than others. This research also indicates kangaroo grazing impact on some plant species. Reduction in rabbit numbers following the 1995 release of calicivirus has not been effective in restoring regeneration. Another experiment was conducted at Middleback Field Station near Whyalla to identify herbivore grazing pressure on the arid zone plant species Acacia aneura using unfenced, sheep fenced and rabbit fenced grazing exclosures. This experiment was set up with seedlings in exclosures, ten replicates of each treatment, at plots four different distances from the watering point to identify the survivorship of seedlings. Data were collected by recording canopy volumes of seedling over an 18 month period and analyzed by Residual Maximal Likelihood (REML). Seedlings both near and far from the watering point were severely effected by large herbivores, either sheep, kangaroos or both, and in a separate experiment kangaroo grazing effects on the seedling were also identified. Seedlings browsed by the rabbits were recovered better than the seedlings grazed by the large herbivores. Decreasing kangaroo activities has been noticed when the rabbit movements increased. Computer modelling was conducted to predict the future plant population structure over 500 years using a matrix population model developed by Tiver et al. (2006) and using data collected in the survey as a starting point. Extinction probabilities of populations of Acacia aneura near watering points, far from watering points and under pulse grazing scenarios were compared. Sheep grazing was found to cause eventual extinction of populations in all parts of sheep paddocks. Together, the results indicate that sheep are the major herbivore suppressing regeneration of perennial plant species. Kangaroo and rabbits have an identifiable but lesser effect. The results have implications for conservation and pastoral management. To achieve ecological sustainability of arid lands a land-use system including a network of reserves ungrazed by sheep and with control of both rabbit and kangaroo numbers will be required.

[Truncated abstract] Understanding the effect that the disturbance of habitat by humans has on the population dynamics and ecology of wild animals is critical for the management of these populations. By understanding the demographic effects of disturbance the ways in which a population can be managed to increase or decrease its rate of change in size also become apparent. This thesis describes the effect that human disturbance, through the establishment of a large naval base, has had on the population dynamics and ecology of tammar wallabies (Macropus eugenii) on Garden Island, Western Australia. The disturbance of the environment on the HMAS Stirling Naval Base included the establishment of large areas of irrigated and fertilised couch grass (Cynodon dactylon) that increased and made virtually constant the amount of food available to the tammars in that area. In addition, traffic associated with the naval base resulted in large numbers of tammar wallabies being killed by vehicles. The effects of these disturbances were determined by comparing population dynamics, through vital rates of survival and fecundity and population growth rates, and spatial ecology, through the size of the animals' home ranges, in three areas of Garden Island. The three areas were the naval base (highly disturbed), southern bushland (adjacent to the naval base) and the northern bushland (undisturbed). The tammars on the naval base were in better body condition than those living in the two bushland areas of the island. ... When the impact of road-kills was removed, increased to 1.150.101 per year on the naval base and 0.960.076 per year in the southern bushland. Fecundity transitions, defined as the product of the rates of birth and pouch-young survival, and adult survival rates were lower in the bushland areas compared with the naval base in two of the three years, which were the main reasons for the lower estimates. There were no significant differences in the size of the tammars' home ranges between areas with modified or unmodified habitats or between the sexes (P>0.05). In summer the mean size of the home ranges was 3.90.66 ha, which was larger than winter when home ranges were 3.20.54 ha, but this difference failed to reach significance (P=0.058). These results indicate that the modification of the tammars' habitat has probably not caused significant changes in the size of the animals' home ranges. The size of the home ranges of tammar wallabies is likely to be determined by a complex interaction of many factors, and habitat modification alone has not been sufficient to cause substantial changes. The results presented in this thesis demonstrate that the disturbance caused by the establishment of the naval base on Garden Island has altered the population dynamics of the tammars wallabies, through increasing in the amount of food available to the tammars and through high numbers of road-kills. These results also demonstrate how gaining detailed knowledge of population dynamics can have direct application to managing the impact of disturbance on populations of wild animals.

The study covered the period August 1971 to February 1975 and was conducted in three blackcurrant plots. One plot comprised mature bushes that were pruned but not sprayed during the course of the study; the other two plots were subject to full normal managerial practices including spraying. Information on various aspects of the biology was revealed and this clarified some of the areas about which little was known previously especially for the Southern Hemisphere. Fecundity is 100 eggs per female, fertility in the field is at least 97% and predation of eggs is always less than 5%. There are six larval instars. Fungi of the genera Beauveria and Cordyceps cause up to 10% mortality of the larvae. This is the first record of the latter genus infecting S. tipuliformis. A sampling plan was developed to enable estimates of the population of S. tipuliformis at various stages to be obtained. This gave information on the distribution of stages of the life cycle within the canes according to the age of the wood. These samples also permitted the construction of life tables for three generations of S. tipuliformis in one plot and one generation in the others. Replication both in space and time was therefore achieved and the results were further replicated by considering each plot as nine separate blocks. The dispersion of the egg and larval stages was tested and found to fit the negative binomial model. A common k, kc, was calculated for the egg stage and the larval c stage. Though not vital to this present study various transformations of the raw data were investigated to see which were most appropriate in order to stabilise the variance for analyses in which such suitability is vital. The logarithmic transformation based on the k parameter of the k negative model [log (x + k/2)) was the most successful. The mortality of the eggs was quite low but a significant proportion of the emerging larvae fail to colonise the pith of a cane. This mortality is density dependent. Other mortalities including winter pruning are density independent or random. The key stage of the life cycle revealed by the life tables is the adult survival. This survival and the consequent population trend index determined from the number of eggs laid was found to be affected by the prevailing weather during the flight period especially during the last week of November and the first two weeks of December.