Offenders who target children are a negative phenomenon in our society. These offenders are often seen as the worst of the worst of criminals and are therefore a priority for investigators trying to solve these crimes as fast as possible. The purpose of this thesis is to see if there are common denominators among these offenders in their modus operandi (MO) and their spatial patterns. If similar patterns emerge amongst these offenders, that would be of investigative importance for those who work with crimes against children. In Study I, a group of child molesters and their MO were studied in order to see how they found their victims and where they committed their crimes. The results were consistent with previous studies on child molesters in that they all committed their crimes at home or close to their homes. In Study II, a geographical profiling tool was tested in order to see if such a program could be used to find an offender who made obscene phone calls (OPC) to children. The results showed that the geographical software based on spatial behaviour, was able to narrow down the search area in which the offender actually lived when he committed his crimes. In Study III, the focus was on the potential witnesses/victims and how much a child could remember correctly of a staged event simulating a potential child molester looking for new victims. The results showed that the children’s event memory were comparable with an adult control group. The combined results could be summarized as follows: offenders who target children usually commit their crimes at home or close to home (or base), they tend to lure children to go with them by using bribes or the recruitment of former victims. Girls seem to be the preferred sex over boys. Children could be used as accurate witnesses in these types of crimes.

The rheological properties of cement based grouts change with water/cement ratio and time, during the course of hydration. For this reason, it is desirable to be able to measure this change continuously, in-line, with a robust instrument during the entire grouting operation in the field. The rheological properties of commonly used cement grouts were determined using the Ultrasound Velocity Profiling combined with the Pressure Difference (UVP+PD) method. A non-model approach was used that directly provides the properties, and the results were compared with the properties obtained using the Bingham and Herschel-Bulkley rheological models. The results show that it is possible to determine the rheological properties, as well as variations with concentration and time, with this method. The UVP+PD method has been found to be an effective measuring device for velocity profile visualization, volumetric flow determination and the characteristics of the grout pump used. / <p>QS 2013</p>

Food inevitably plays a vital role in our lives and is of great importance to our health and wellbeing. With increasing age, it is equally important to achieve adequate nutrition to prevent and alleviate age-related diseases. One problem is that far too many older adults find it difficult to eat enough nutritious food which in the long term may lead to malnutrition. With an increasing life expectancy the older population is growing and the problem with malnutrition is of great concern. Malnutrition can be caused by many different factors which make it difficult to find a single unique solution to the problem. Oral nutritional supplementation is one approach which has proved to be useful for improving the nutritional intake. This paper examines the possibility of creating high fat fruit emulsion with mango puré, rapeseed oil and lecithin, using simple blending equipment.  The puré-like products were evaluated for emulsion stability by a storage test, oil droplet size by a light microscope and light scattering device, viscosity by a viscometer, sensory properties by Flavoring profiling. Furthermore the nutritional values were calculated.  Successful emulsions were created using up to 50 g/100g rapeseed oil with adequate emulsion stability without lecithin. The energy content of the highest fat emulsion was 475kcal/100g. The quantities of lecithin used in these products reduced the oil droplet size but lowered the emulsion stability perhaps by depleting the stabilizing effect of mango originated particles. The lecithin made the product more viscous, also the oily and creamy/Rich mouth-feel were perceived higher with increasing lecithin. In these products and with the quantities used the lecithin was redundant. Further development of similar products but with addition of protein and perhaps sugar, to enhance flavor, should be of high interest.

Rhomboids are unique membrane proteins that use a serine protease hydrolysis mechanism to cleave a transmembrane substrate within the lipid bilayer. This remarkable proteolytic activity is achieved by a core domain comprised of 6 transmembrane segments that form a hydrophilic cavity submerged in the membrane. In addition to this core domain, many rhomboids also possess aqueous domains of varying sizes at the N- and/or C-terminus, the sequences of which tend to be rhomboid-type specific. The functional role of these extramembranous domains is generally not well understood, although it is thought that they may be involved in regulation of rhomboid activity and specificity. While extramembranous domains may be important for rhomboid activity, they are absent in all x-ray crystal structures available. For this reason, we have focused on uncovering the structural and functional relationship between the rhomboid cytoplasmic domain and its catalytic transmembrane core. To investigate the structure and function of the bacterial rhomboid cytoplasmic domain, full-length rhomboids from Escherichia coli and Pseudomonas aeruginosa were studied using solution nuclear magnetic resonance (NMR) spectroscopy, mutation and activity assays. The P. aeruginosa rhomboid was purified in a range of membrane-mimetic media, evaluated for its functional status in vitro and investigated for its NMR spectroscopic properties. Results from this study suggested that an activity-modulating interaction might occur between the catalytic core transmembrane domain and the cytoplasmic domain. Further investigation of this hypothesis with the E. coli rhomboid revealed that protease activity relies on a short but critical sequence N-terminal to the first transmembrane segment. This sequence was found to have a direct impact on the rhomboid active site, and should be included in future structural studies of this catalytic domain. The structure of the cytoplasmic domain from the E. coli rhomboid was also determined by solution NMR. We found that it forms slowly-exchanging dimers through an exchange of secondary structure elements between subunits, commonly known as three-dimensional domain swapping. Beyond this rare example of domain swapping in a membrane protein extramembranous domain, we found that the rate of exchange between monomeric and dimeric states could be accelerated by transient interactions with large detergent micelles with a phosphocholine headgroup, but not by exposure to other weakly denaturing conditions. This novel example of micelle-catalyzed domain swapping interactions raises the possibility that domain swapping interactions might be induced by similar interactions in vivo. Overall, the results of this thesis have identified detergent conditions that preserve the highest level of activity for bacterial rhomboids, defined the minimal functional unit beyond what had been identified in available x-ray crystal structures, and characterized a novel micelle-catalyzed domain-swapping interaction by the cytoplasmic domain.

By integrating the simplicity of 18O-labeling and the low signal-to-noise of MS/MS spectra with supporting software and combining them with global shotgun protein identification, a robust quantitative pipeline has been created that avoids the disadvantages of other quantitative approaches. Test mixtures of labeled and unlabeled peptides were subjected to LC-MS/MS profiling experiments. Software programs were developed and applied to automatically determine protein ratios between two samples while applying a correction for incomplete labeling. The measurement of relative abundance at the product ion (MS/MS) level, instead of at the full scan (MS) level, is shown to provide excellent accuracy and sensitivity. Ratio distributions approached the expected means, allowing empirical derivation of confidence level cutoffs for determining statistically significant fold-changes in protein abundance. A set of stringent criteria for detecting spurious ratios based on consistency checking between unlabeled and labeled y-ion pairs was found to highlight putative false positive identifications.

Field Programmable Gate Arrays (FPGAs) are a reconfigurable hardware platform which enable the acceleration of software code through the use of custom-hardware circuits. Complex systems combining processors with programmable logic require partitioning to decide which code segments to accelerate. This thesis provides tools to help determine which software code sections would most benefit from hardware acceleration. A low-overhead profiling architecture, called LEAP, is proposed to attain real-time profiles of an FPGA-based processor. LEAP is designed to be extensible for a variety of profiling tasks, three of which are investigated and implemented to identify candidate software for acceleration. 1) Cycle profiling determines the most time-consuming functions to maximize speedup. 2) Cache stall profiling detects memory-intensive code; large memory overheads reduce the benefits of acceleration. 3) Energy consumption profiling detects energy-inefficient code through the use of an instruction-level power database to minimize the system's energy consumption.

By integrating the simplicity of 18O-labeling and the low signal-to-noise of MS/MS spectra with supporting software and combining them with global shotgun protein identification, a robust quantitative pipeline has been created that avoids the disadvantages of other quantitative approaches. Test mixtures of labeled and unlabeled peptides were subjected to LC-MS/MS profiling experiments. Software programs were developed and applied to automatically determine protein ratios between two samples while applying a correction for incomplete labeling. The measurement of relative abundance at the product ion (MS/MS) level, instead of at the full scan (MS) level, is shown to provide excellent accuracy and sensitivity. Ratio distributions approached the expected means, allowing empirical derivation of confidence level cutoffs for determining statistically significant fold-changes in protein abundance. A set of stringent criteria for detecting spurious ratios based on consistency checking between unlabeled and labeled y-ion pairs was found to highlight putative false positive identifications.

Field Programmable Gate Arrays (FPGAs) are a reconfigurable hardware platform which enable the acceleration of software code through the use of custom-hardware circuits. Complex systems combining processors with programmable logic require partitioning to decide which code segments to accelerate. This thesis provides tools to help determine which software code sections would most benefit from hardware acceleration. A low-overhead profiling architecture, called LEAP, is proposed to attain real-time profiles of an FPGA-based processor. LEAP is designed to be extensible for a variety of profiling tasks, three of which are investigated and implemented to identify candidate software for acceleration. 1) Cycle profiling determines the most time-consuming functions to maximize speedup. 2) Cache stall profiling detects memory-intensive code; large memory overheads reduce the benefits of acceleration. 3) Energy consumption profiling detects energy-inefficient code through the use of an instruction-level power database to minimize the system's energy consumption.

The differentiation of plant vascular tissue is regulated by plant hormones and transcription factors. One of the key plant hormones involved in this process is auxin. Auxin signals are mediated by auxin response factor transcription factors (ARFs). These transcription factors are involved in the perception of auxin signals and the subsequent activation or deactivation of suites of downstream genes. Based on its mutant phenotype, one of the most interesting members of this family is the ARF MONOPTEROS (MP). This thesis investigates the role played by MP in secondary vascular differentiation, as well as taking a look at other molecular aspects of secondary vascular differentiation, with a focus on the model plants Arabidopsis thaliana and poplar (Populus trichocarpa and hybrid poplar). A dexamethasone inducible RNAi silencing strategy was developed, and transgenic Arabidopsis lines produced. When silencing was induced in these lines from germination, a phenotype closely resembling the mp mutant was observed. When MP silencing was induced in bolting stems, early senescence, as well as a dramatic reduction in interfascicular fibre production was observed, and these stems were thinner and less rigid than empty vector controls. RNA from these stems was isolated and used in a global transcript profiling microarray experiment. This experiment showed that several auxin-related genes, as well as several transcription factors, were differentially regulated in response to MP silencing. Because Arabidopsis is not a typical woody plant, further investigation into the role played by MP in wood formation was done using the model tree poplar. A BLAST search of a poplar xylem EST database identified a single promising partial sequence. Based on this sequence information, a poplar MP homolog was isolated and named PopMP1. The full-length sequence of this gene demonstrated remarkable structural conservation when compared with that of Arabidopsis. Subsequent complete sequencing of the poplar genome revealed a second copy of the MP gene in poplar and named PopMP2. Expression profiling across a range of tissues suggests that subfunctionalization has occurred between the two copies. Overexpression transgenic lines for PoptrMP1 were developed. AtHB8 is known to be regulated by MP in Arabidopsis, and a poplar HB8 homolog was upregulated in the transgenic lines. However, no obvious physical phenotype in these lines was apparent. To investigate the transcriptome-wide changes associated with initiation of cambium formation in poplar stems, a global transcript profiling experiment was performed. Out of 15400 genes tested, 2320 met an arbitrary cutoff of >1.3 fold and p-value <0.05 and were labeled differentially expressed (DE). These included several transcription factors and showed remarkable similarity to analogous data from Arabidopsis. The conclusions drawn from this thesis support the hypothesis that MP plays roles in later development, and do not rule out the possibility that MP is directly involved in wood development. The data reported also offer a large number of candidate for further investigation into the genetic control of wood development.

The differentiation of plant vascular tissue is regulated by plant hormones and transcription factors. One of the key plant hormones involved in this process is auxin. Auxin signals are mediated by auxin response factor transcription factors (ARFs). These transcription factors are involved in the perception of auxin signals and the subsequent activation or deactivation of suites of downstream genes. Based on its mutant phenotype, one of the most interesting members of this family is the ARF MONOPTEROS (MP). This thesis investigates the role played by MP in secondary vascular differentiation, as well as taking a look at other molecular aspects of secondary vascular differentiation, with a focus on the model plants Arabidopsis thaliana and poplar (Populus trichocarpa and hybrid poplar). A dexamethasone inducible RNAi silencing strategy was developed, and transgenic Arabidopsis lines produced. When silencing was induced in these lines from germination, a phenotype closely resembling the mp mutant was observed. When MP silencing was induced in bolting stems, early senescence, as well as a dramatic reduction in interfascicular fibre production was observed, and these stems were thinner and less rigid than empty vector controls. RNA from these stems was isolated and used in a global transcript profiling microarray experiment. This experiment showed that several auxin-related genes, as well as several transcription factors, were differentially regulated in response to MP silencing. Because Arabidopsis is not a typical woody plant, further investigation into the role played by MP in wood formation was done using the model tree poplar. A BLAST search of a poplar xylem EST database identified a single promising partial sequence. Based on this sequence information, a poplar MP homolog was isolated and named PopMP1. The full-length sequence of this gene demonstrated remarkable structural conservation when compared with that of Arabidopsis. Subsequent complete sequencing of the poplar genome revealed a second copy of the MP gene in poplar and named PopMP2. Expression profiling across a range of tissues suggests that subfunctionalization has occurred between the two copies. Overexpression transgenic lines for PoptrMP1 were developed. AtHB8 is known to be regulated by MP in Arabidopsis, and a poplar HB8 homolog was upregulated in the transgenic lines. However, no obvious physical phenotype in these lines was apparent. To investigate the transcriptome-wide changes associated with initiation of cambium formation in poplar stems, a global transcript profiling experiment was performed. Out of 15400 genes tested, 2320 met an arbitrary cutoff of >1.3 fold and p-value <0.05 and were labeled differentially expressed (DE). These included several transcription factors and showed remarkable similarity to analogous data from Arabidopsis. The conclusions drawn from this thesis support the hypothesis that MP plays roles in later development, and do not rule out the possibility that MP is directly involved in wood development. The data reported also offer a large number of candidate for further investigation into the genetic control of wood development.