O objetivo do presente estudo foi avaliar as características físico-químicas, microbiológicas, índices de proteólise, lipólise e viscosidade do iogurte natural batido, elaborado a partir de leite integral contendo três níveis de células somáticas (CS): <400.000 células/mL, 400.000-800.000 células/mL e >800.000 células/mL. Cada tipo de leite foi obtido da ordenha de animais previamente selecionados de acordo com o nível de CS e a composição do leite. Para a fabricação do iogurte, o leite foi padronizado quanto ao teor de sólidos totais (ST) e transferido para tanque multi-uso, no qual foi submetido à pasteurização (90ºC, 15 minutos), seguida da adição da cultura starter, incubação (42ºC, aprox. 3 horas) e envase do produto. O iogurte foi mantido em câmara fria a 5ºC, sendo que os parâmetros de qualidade foram avaliados mediante a colheita de amostras nos dias 1, 10, 20 e 30 após a fabricação. A seqüência de elaboração foi repetida seis vezes, no período de março a agosto/2003. As análises efetuadas no produto incluíram: pH, acidez, percentuais de gordura, ST, sólidos não-gordurosos (SNG), nitrogênios total (NT), não caseinoso (NNC) e não protéico (NNP), ácidos graxos livres (AGL), viscosidade aparente, contagem de bactérias láticas e coliformes a 30º e 45ºC. Não foram constatadas diferenças (P > 0,05) entre os parâmetros físico-químicos e microbiológicos obtidos no leite e no iogurte. Os índices de proteólise dos iogurtes, estimados através da relação NT – NNC / NT – NNP, mantiveram-se constantes, não apresentando diferenças entre os tratamentos (P > 0,05). A viscosidade do iogurte produzido com leite contendo mais de 800.000 células/mL foi maior (P < 0,05) em relação aos outros tratamentos nos dias 10, 20 e 30 após a fabricação, observando-se uma correlação positiva (P < 0,05) com os níveis de CS no 10º e 20º dia de armazenamento. A concentração de AGL foi maior (P < 0,05) no iogurte de alta contagem de CS no 1º e 30º dia de armazenamento, sendo observada uma correlação positiva (P < 0,05) com o nível de CS nos mesmos dias. Os resultados indicam que o aumento dos níveis de CS no leite não apresenta efeitos sobre a proteólise do iogurte, porém origina um aumento na viscosidade e no grau de lipólise do produto durante o armazenamento por 30 dias. / The aim of the present study was to evaluate physical, chemical and microbiological characteristics, as well as proteolysis, lipolysis and viscosity of plain stirred yoghurt produced from whole milk with somatic cell counts (SCC) at levels of < 400,000 cells/mL, 400,000-800,000 cells/mL and > 800,000 cells/mL. Each milk treatment was obtained from selected cows, according to its SSC status and milk composition. Yoghurts were produced after standardisation of milk total solids (TS), followed by pasteurisation (90ºC, 15 minutes), addition of starter culture, incubation (42ºC, approx. 3 hours) and packaging. Yoghurts were stored at 5ºC, and quality evaluation was conducted in samples collected on days 1, 10, 20 and 30 after production. Manufacturing procedures were repeated for six times, from March to August/2003. Yoghurt analyses included: pH, acidity, fat, protein, TS, solids non-fat (SNF), total nitrogen (TN), non-casein nitrogen (NCN) and non-protein nitrogen (NPN), free fatty acids (FFA), apparent viscosity, lactic bacteria counts and coliforms at 30 and 45ºC. There were no differences (P > 0.05) in physical, chemical and microbiological parameters of milk and yoghurt among treatments. Proteolysis, as estimated by TN – NCN / TN – NPN relation, was constant for all treatment yoghurts (P > 0.05). Viscosity of high SCC yoghurt (> 800,00 cells/mL) increased (P < 0.05) on 10, 20 and 30 days storage, and a positive correlation (P < 0.05) with SCC was observed on days 20 and 30. FFA content was higher (P < 0.05) on days 1 and 30 of storage, and besides there was a positive correlation (P < 0.05) between SCC and FFA levels on the same days of storage. Results indicate that high SCC milk do not affect proteolysis of yoghurt, although it increases viscosity and lypolisis during storage for 30 days.

Amaciamento natural devido proteólise miofibrilar pelas enzimas calpaínas (cálcio-dependentes) e descoloração devido oxidação do pigmento mioglobina podem ocorrer em carne maturada. Em bovinos, o tipo biológico Bos indicus apresenta maior atividade de calpastatina (CAST, inibidora das calpaínas) no músculo e concentração de melanina (modulador de vitamina D3) na pele do que Bos taurus. Maior concentração de melanina na pele reduz fotossíntese de vitamina D3 e, subsequentemente, poderia reduzir as concentrações de seus metabólitos 25-hidróxivitamina D3 (25-D) e 1,25-di-hidróxi-vitamina D3 (1,25-D; modulador de cálcio) no plasma de Bos indicus. Nos casos de maiores concentrações de 1,25-D plasmático, uma melhor absorção de cálcio da dieta com aumento de suas concentrações no plasma e músculo poderia resultar em atividade melhorada das calpaínas. Além disso, maiores concentrações de 1,25-D plasmático poderiam colaborar para minimizar oxidação de carne devido sua propriedade antioxidante. Então, além da maior atividade de CAST no músculo, os Bos indicus poderiam ter mais duas desvantagens para produzir carne mais macia e menos oxidada: concentrações maiores de melanina na pele e menores de 1,25-D no plasma. Desta forma, o objetivo deste trabalho foi estudar as relações entre as concentrações de melanina total (MELT) e suas frações [faeumelanina (FAE) e eumelanina (EUM)] na pele, metabólitos da vitamina D3 (25-D e 1,25-D) no plasma, cálcio plasmático e muscular e maciez [Índice de Fragmentação Miofibrilar (MFI) e força de cisalhamento (FC)] e cor (valores de L*, a* e b*) em carne maturada (1, 7 e 14 dias) e suas associações com polimorfismos de um único nucleotídeo (SNPs) nos genes candidatos receptor da melanocortina-1 [MC1R; rs109688013 (C/T) e rs110710422 (G/-)], proteína ligante à vitamina D3 [DBP; rs136359868 (T/C) e rs135330728 (T/C)] e CAST [rs109384915 (T/C)]. Bovinos Nelore (n=86), abatidos com 516 ± 39 kg aos 24 ± 1 meses, foram usados para determinação dos genótipos e mensuração das características. Na pele, a fração EUM foi positivamente correlacionada com MELT, mais do que a fração FAE. As frações de melanina na pele foram correlacionadas negativamente. A fração FAE foi correlacionada negativamente com 1,25-D plasmático, mas não foi correlacionada com 25-D plasmático. Melanina e suas frações na pele e metabólitos da vitamina D3 no plasma não foram correlacionadas com cálcio plasmático e muscular. Todavia, cálcio no plasma e músculo foram correlacionados positivamente com MFI e valores de L* e b* e negativamente com FC e valores de a*. A EUM e MELT na pele foram correlacionadas negativamente com FC e valores de a* e b* e positivamente com valores de L*, enquanto que 25-D no plasma foi correlacionada positivamente com MFI e valores de a* e b* e negativamente com valores de L*. A FAE foi correlacionada positivamente com MFI e negativamente com os valores de L*, a* e b*. No gene MC1R, o alelo T do SNP rs109688013 apresentou-se fixado (100%) na população, enquanto que o alelo G e sua deleção (-) do SNP rs110710422 tiveram frequência de 97,7 e 2,3%, respectivamente. SNPs do gene MC1R resultaram nos genótipos do loco Extension (E/E = T/T + G/G e E/e = T/T + G/-), que foi associado com 1,25-D plasmático e valores de b* no dia 1. No gene DBP, o alelo C do SNP rs136359868 foi menos frequente (3,5%) do que o alelo T, enquanto que os alelos C e T do SNP rs135330728 tiveram uma frequência de 73,8 e 26,2%, respectivamente. SNPs do gene DBP foram associados com MELT na pele e valores de L* e a* em diferentes dias. No gene CAST, os alelos C e T do SNP rs109384915 tiveram a mesma frequência. O SNP rs109384915 foi associado com MFI ao dia 7 e a substituição do alelo T por C reduziu os valores de MFI e a* no dia 7 e os valores de b* no dia 1. Ao final, maiores concentrações de FAE na pele e 25-D no plasma melhoraram proteólise miofibrilar e cor de carne, enquanto as maiores concentrações de EUM e MELT na pele resultaram em uma carne mais macia com uma pior cor. Associações do loco Extension e dos SNPs no gene DBP com cor de carne parecem consequência das diferenças em 1,25-D no plasma e melanina na pele. SNP do CAST associou-se com proteólise miofibrilar e cor de carne maturada, mas não com FC. / Natural tenderization by myofibrillar proteolysis through the calpains enzymes (calcium-dependent) and discoloration by oxidation of myoglobin pigment may occur in aged meat. In cattle, the Bos indicus biological type has higher calpastatin activity (CAST, inhibitor of calpains) in muscle and melanin concentration (modulator of vitam in D3) in skin than Bos taurus. Higher melanin concentration in skin reduces photosynthesis of vitamin D3 and, subsequently, could reduce the concentrations of its metabolites 25-hydroxy-vitamin D3 (25-D) and 1,25-di-hydroxy-vitamin D3 (1,25-D; modulator of calcium) in plasma from Bos indicus cattle. In cases of higher plasma 1,25-D concentrations, an improved absorption of calcium from the diet followed by increased plasma calcium concentrations could result in enhanced activity of calpains. Furthermore, higher plasma 1,25-D concentrations could collaborate to minimize meat oxidation due to its antioxidant propriety. Then, in addition to higher CAST activity in muscle, the Bos indicus cattle could have two more disadvantages to produce tender and less oxidized meat: higher melanin concentrations in skin and lower 1,25-D concentrations in plasma. Hence, the objective of this work was to study the relationships between the concentrations of total melanin (MELT) and its fractions [pheomelanin (PHEO) and eumelanin (EUM)] in skin, vitamin D3 metabolites (25-D and 1,25-D) in plasma, plasma and muscle calcium, and tenderness [Myofibrillar Fragmentation Index (MFI) and shear force (SF)] and color (L*, a*, and b* values) in aged meat (1, 7, and 14 days) and their associations with single nucleotide polymorphisms (SNPs) in candidate genes as melanocortin-1 receptor [MC1R; rs109688013 (C/T) and rs110710422 (G/-)], vitamin D3-binding protein [DBP; rs136359868 (T/C) and rs135330728 (T/C)], and CAST [rs109384915 (T/C)]. Nellore cattle (n=86), slaughtered with 516 ± 39 kg at 24 ± 1 months, were used for genotyping and traits measurements. In skin, the EUM fraction was positively correlated with MELT than the PHEO fraction. The melanin fractions in skin were negatively correla ted. The PHEO fraction was negatively correlated with plasma 1,25-D, but not with plasma 25-D. Melanin and its fractions in skin and vitamin D3 metabolites in plasma were not correlated with plasma and muscle calcium. Nevertheless, plasma and muscle calcium were positively correlated with MFI, and L* and b* values and negatively correlated with SF and a* values. The EUM and MELT in skin were negatively correlated with SF, and a* and b* values and positively correlated with L* values, while 25-D in plasma was positively correlated with MFI, and a* and b* values and negatively correlated with L* values. The PHEO was positively correlated with MFI and negatively correlated with L*, a*, and b* values. In MC1R gene, the rs109688013 SNP allele T was fixed (100%) in the population, while the rs110710422 SNP allele G and its deletion (-) had a frequency of 97.7 and 2.3%, respectively. MC1R SNPs resulted in genotypes of the Extension locus (E/E = T/T + G/G and E/e = T/T + G/-), which was associated with plasma 1,25-D and b* values at the day 1. In DBP gene, the rs136359868 SNP allele C was less frequent (3.5%) than allele T, while rs135330728 SNP alleles C and T had a frequency of 73.8 and 26.2%, respectively. DBP SNPs were associated with MELT in skin, and L* and a* values at different days. In CAST gene, the rs109384915 SNP alleles C and T had a similar frequency. The rs109384915 SNP was associated with MFI at the day 7 and the substitution from allele T to C reduced the MFI and a* values at the day 7 and the b* values at the day 1. At last, higher skin PHEO and plasma 25-D concentrations improved the myofibrillar proteolysis and meat color, while higher skin EUM and MELT concentrations resulted in a meat with improved tenderness and worsened color. Associations of the Extension locus and polymorphisms in DBP gene with the meat color seem to be a consequence of the differences in plasma 1,25-D and skin melanin. CAST SNP is associated with myofibrillar proteolysis and meat color, but not with SF.

Orientador: Mirna Lúcia Gigante / Dissertação (mestrado) - Universidade Estadual de Campinas, Faculdade de Engenharia de Alimentos / Made available in DSpace on 2018-08-19T11:42:02Z (GMT). No. of bitstreams: 1 Dias_MariaElisabeteFernandesDias_M.pdf: 5400605 bytes, checksum: 00a236017885ffd7ef50a95f530931bb (MD5) Previous issue date: 2011 / Resumo: O objetivo deste trabalho foi avaliar o efeito da adição de CO2 ao leite cru sobre as características do leite UHT obtido por injeção direta de vapor e armazenamento a 25ºC, 35ºC e 45ºC por 180 dias. O leite cru (250 litros) foi dividido em duas porções que foram armazenadas em tanques de expansão a 4?1ºC por seis dias. Uma porção foi adicionada de CO2 grau alimentício até que o pH do leite atingisse 6,20, enquanto a outra serviu de controle. O leite cru foi avaliado quanto ao pH, acidez, prova do álcool, composição físico-química, proteólise, lipólise, cor e concentração de CO2 após a injeção. Para caracterização microbiológica, o leite cru foi avaliado quanto à contagem padrão em placas e de micro-organismos psicrotróficos no dia da recepção e após seis dias de armazenamento refrigerado. As amostras foram submetidas ao tratamento UHT por injeção direta de vapor (143ºC/4s), envasadas em embalagens tetra brik asseptic de 125 ml e armazenadas em BOD a 25, 35 e 45 ºC por 180 dias. No dia seguinte, as amostras foram avaliadas quanto as mesmas características do leite cru, além da prova do álcool, viscosidade, sedimentação, eletroforese, peptídeos por HPLC e esterilidade comercial. Após 1, 30, 60, 90, 120, 150 e 180 dias de armazenamento, as amostras foram avaliadas quanto ao pH, acidez, nitrogênio e frações nitrogenadas, cor, ácidos graxos livres, sedimentação, viscosidade, eletroforese e peptídeos por HPLC. O delineamento experimental foi o de sub-sub-parcelas divididas e o experimento foi repetido três vezes. O efeito do tratamento, da temperatura e do tempo de armazenamento, e a interação destes fatores sobre as características do leite UHT foi avaliado por análise de variância (ANOVA) e teste de Tukey ao nível de 5% de significância. Após seis dias de armazenamento refrigerado, não houve diferença significativa nas características físico-químicas do leite adicionado ou não de CO2, exceto na quantidade de ácido graxos livres que foi maior no leite controle do que no adicionado de CO2. A adição de CO2 inibiu o desenvolvimento de micro-organismos durante o armazenamento refrigerado, uma vez que a contagem total e de psicrotróficos do leite controle foi maior que as contagens do leite adicionado de CO2 . O pH das amostras de leite UHT armazenadas a diferentes temperaturas foi afetado pela temperatura e pelo tempo de armazenamento, apresentando maior decréscimo do pH nas amostras armazenadas a 45 ºC. A cor das amostras a 25°C não apresentou escurecimento durante os 180 dias, enquanto as armazenadas a 35°C e 45°C apresentaram desenvolvimento de cor visível a olho nu e aumento no valor b* ao longo do tempo. A lipólise do leite UHT foi maior nas amostras armazenadas a 45ºC. A proteólise foi maior no leite armazenado a 45°C, cujo aumento não refletiu na viscosidade e sedimentação do leite, que não foram significativamente afetados até o 120° dia de armazenamento, prazo de validade usualmente garantido pelas indústrias de processamento de leite UHT no Brasil / Abstract: The objective of this study was to evaluate the effect of CO2 addition to raw milk on the characteristics of UHT milk obtained by direct steam injection and stored at 25 ° C, 35 ° C and 45 ° C for 180 days. Raw milk (250 liters) was divided in two portions that were stored in bulk tanks at 4 ± 1 ° C for six days. To one portion was added food grade CO2 until the pH of milk was 6.20, while the other portion was the control sample. Raw milk was evaluated for pH, acidity, physicochemical composition, proteolysis, lipolysis, color and concentration of CO2 after injection. Raw milk was evaluated for standard plate count and psychrotrophic micro-organisms on the reception and after six days of cold storage, for microbiological characteristics. The samples were submitted to UHT treatment by direct steam injection (143°C/4s), packed in 125 ml Tetra Brik Asseptic packing and stored in BOD at 25, 35 and 45 ° C for 180 days. One day after processing, the samples were evaluated for the same characteristics of raw milk, plus alcohol stability, viscosity, sedimentation, electrophoresis, peptides by HPLC and commercial sterility. After 1, 30, 60, 90, 120, 150 and 180 days of storage, samples were evaluated for pH, acidity, nitrogen and nitrogen fractions, color, free fatty acids, sedimentation, viscosity, electrophoresis and peptides by HPLC. The experimental design was split-split-plot and the complete experiment was repeated three times. The effect of treatment, temperature and storage period as well as the interaction of these factors on the characteristics of UHT milk was assessed by analysis of variance (ANOVA) and Tukey¿s test at 5% significance level. After six days of cold storage, there was no significant difference in the physicochemical characteristics of raw milk with or without CO2 addition, except for free fatty acid values, which were higher for the milk without CO2 addition. The addition of CO2 inhibited the development of microorganisms during storage, since the standard plate count and psychrotrophic count of milk control was higher than values for the CO2 added milk. The pH of UHT milk samples was affected by temperature and storage time, showing greater decrease in pH for samples stored at 45°C. The color of the samples at 25°C showed no browning during the 180 days, while those stored at 35 ° C and 45 ° C showed brown color visible to the naked eye and an increased b * value over time. Lipolysis of UHT milk samples was higher for samples stored at 45°C. The proteolysis was higher in milk stored at 45°C, whose increase was not reflected in viscosity and sedimentation of the milk, since these parameters were not significantly affected during 120 days-storage, period of shelf life usually guaranteed by the processing industries of UHT milk in Brazil / Mestrado / Tecnologia de Alimentos / Mestre em Tecnologia de Alimentos

La mobilité est une fonction clé de la qualité fécondante et de sélection des spermatozoïdes des techniques d’assistance médicale à la procréation (AMP). Nous manquons cependant d'information des mécanismes moléculaires contrôlant cette mobilité. Ce travail de thèse est articulé autour de 2 protéines d’intérêts impliquées dans la mobilité spermatique: la protéine Tau (Tubule-associated unit) associée à la polymérisation des microtubules dans le neurone, et la protéine d’ancrage aux kinases A4 (AKAP4), protéine majeure de la gaine fibreuse du flagelle spermatique, connue pour son implication dans la mobilité spermatique.Très peu d’études traitent de la protéine Tau dans l’appareil génital masculin, et aucune chez l’homme. Dans une première partie de ce travail, nous avons analysé l’expression de la protéine Tau dans le spermatozoïde et le testicule humain par une approche immuno-histo-chimique (article 1). La protéine Tau est localisée dans la pièce intermédiaire du flagelle du spermatozoïde, et dans le spermatocyte et la spermatide dans le testicule. Les rôles potentiels de la protéine Tau durant la spermatogenèse sont discutés dans une revue de la littérature (article 2).Les avancées dans le domaine de la protéomique permettent aujourd’hui d’étudier le protéome du spermatozoïde et de ses compartiments cellulaires de façon hautement résolutive. Le protéome global du spermatozoïde a été étudié chez des hommes consultant le centre de procréation assistée du CHRU de Lille. Il a permis de définir un groupe de spermatozoïdes présentant majoritairement des protéines de haut poids moléculaire et un groupe présentant une protéolyse aux dépends des protéines de haut poids moléculaire. L’AKAP4 a été identifiée parmi les protéines de hauts poids moléculaire. Nous avons étudié, quantifié le profil d’expression de l’AKAP4 en Western Blot dans le sperme d’hommes venant effectuer un spermogramme et corrélé les données biochimiques du protéome et de l’AKAP4 au spermogramme (article en soumission 3). Le rôle de l’AKAP4 comme marqueur prédictif en AMP est ensuite abordé. Les données clinico-biologiques (logiciel INFOFIV) des tentatives d’AMP au CHRU de Lille ont été confrontées aux données quantitatives du protéome global et de l’AKAP4 (article en préparation 4).Les protéines Tau et AKAP4 sont des protéines d’intérêts dans la prise en charge de l’homme infertile. L’AKAP4 pourrait être proposée comme biomarqueur dans la prise en charge en AMP. / Motility is a key function of the fertilizing quality and the selection of sperm for assisted reproductive technology (ART). However, we lack information on molecular mechanisms controlling this mobility. This thesis is structured around 2 proteins of interest involved in sperm mobility: Tau (tubule-associated unit) associated with microtubule polymerization in the neuron, and the A-kinase anchoring protein 4 (AKAP4), the main protein of the fibrous sheath of the sperm’s flagellum, known for its involvement in sperm motility.Very few studies focus on the Tau protein in the male reproductive system, and none in humans. In the first part of this work, we analysed the expression of the Tau protein in the sperm and human testis through an immuno-histo-chemical approach (Article 1). The Tau protein is localized in the intermediate part of the sperm flagellum and in the spermatocyte and spermatid in the testis. The potential roles of the Tau protein during spermatogenesis are discussed in a review of the literature (Article 2).Advances in the field of proteomics now allow the study the proteome of sperm and its cellular compartments in a highly-resolutive way. The global sperm proteome was studied in men visiting the assisted reproduction center of Lille University Hospital. This has led to a group of sperm with predominantly high molecular weight proteins being identified as well as a group having proteolysis at the expense of high molecular weight proteins. The AKAP4 was identified among the high molecular weight proteins. We studied, quantified the profile of AKAP4 expression by Western Blot in the sperm of men undergoing a semen analysis and correlated the biochemical data of the proteome and AKAP4 to the semen analysis (article 3 in submission). The role of AKAP4 as a predictive marker of ART success is then discussed. Clinical and biological data (INFOFIV software) of ART attempts at the Lille University Hospital were compared with quantitative data of the global proteome and AKAP4 (Article 4 in preparation).Tau protein and AKAP4 are proteins of interest in the management of infertile men. The AKAP4 could be proposed as a biomarker in ART treatments.

La perte de masse et de force musculaires liée à l’âge, ou sarcopénie, pourrait être partiellementexpliquée par un défaut de récupération de masse musculaire après des épisodes générateursd’atrophie musculaire. Ainsi, les périodes d’immobilisation qui augmentent avec l’âge (alitement,convalescence, fracture) pourraient être suivies d’une absence de récupération musculaire etcontribuer à la fonte musculaire au cours du vieillissement. Les causes de ce défaut de récupérationimpliquent notamment un déséquilibre du taux de renouvellement protéique et du taux derenouvellement cellulaire. L’objectif de cette thèse a donc été de mettre en évidence les mécanismesresponsables de l’atrophie musculaire chez le rat âgé au cours de l’immobilisation et ceux quiseraient défaillants afin de déceler les mécanismes à cibler pour favoriser la récupérationmusculaire.Des rats âgés ont été immobilisés pendant 8 jours par plâtrage unilatéral de la patte arrière, puislaissés en récupération pendant 40 jours après le déplâtrage. Nous avons montré que chez cesanimaux nourris avec un régime contenant 13% de caséine, l’immobilisation entraîne une atrophiedes muscles immobilisés mais, contrairement au rat adulte, le rat âgé ne récupère jamais la massemusculaire perdue. L’atrophie des muscles immobilisés peut être expliquée par 1/ une augmentationde l’apoptose et de la protéolyse ubiquitine-protéasome-dépendante musculaires, 2/ une diminutionde la régénération des cellules musculaires et 3/ une diminution de la protéosynthèse musculaire àl’état nourri. Tous ces phénomènes pourraient résulter de la présence d’un fort stress oxydant etd’une importante inflammation intramusculaire. Tous ces paramètres sont normalisés dès 10 jours derécupération, ce qui permet de stopper l’atrophie mais ne permet pas d’initier la phase derécupération musculaire. Nous avons donc testé l’effet de différentes supplémentationsnutritionnelles au cours de la période de récupération afin de favoriser un gain de masse musculairepost immobilisation. Des supplémentations en leucine (acide aminé bien connu pour stimuler laprotéosynthèse et inhiber la protéolyse) ont ainsi été réalisées. Chez les rats supplémentés, uneamélioration de la synthèse protéique et une normalisation plus précoce des activités protéolytiquesdu protéasome ont été observées. Cependant cette amélioration du métabolisme protéique ne s’estpas traduite par un gain de masse musculaire. Par contre, la modulation qualitative et quantitative desapports en protéines a pu permettre d’obtenir une récupération significative de masse musculaire :ainsi des régimes contenant 13% de lactosérum et des régimes hyper-protéinés ont permis de gagner50% de la masse perdue et ce, dès 20 jours de récupération.Nos résultats montrent que l’immobilisation chez le rat âgé aggrave la sarcopénie. Une fortealtération du métabolisme protéique permet d’expliquer la perte de muscle et la seule normalisationde la protéolyse et de la protéosynthèse permet d’expliquer l’absence de récupération musculaire.Nous avons montré que la modulation des apports en protéines au cours de la phase de récupérationpouvait permettre un gain de protéines. / Sarcopenia, the age-related muscle mass loss, might be partially explained by an impairedmuscle mass recovery of skeletal muscle mass after a catabolic state. Thus, immobilization periodswhich increase with aging could induce a muscle atrophy followed by a lack of muscle massrecovery. An imbalance of protein and cellular metabolisms are certainly involved in this absenceof recovery. The aim on this Ph.D thesis was to explore the mechanisms involved in muscle massatrophy during immobilization and their possible alteration during the recovery period in old rats.Old rats were immobilized for 8 days by unilateral hind limb casting and then allowed torecover for 40 days. Our results showed that animals fed a 13% casein diet wasted muscle mass inimmobilized muscles but, contrarily to adult animals, they never recovered the muscle mass loss.Muscle atrophy was due to 1/ an increase of apoptotic and ubiquitine-proteasome-dependentproteolytic pathways, 2/ a decrease of muscle regeneration processes and 3/ a decrease of muscleprotein synthesis at the fed state. These changes paralleled an increase of intracellular inflammationand oxidative stress. As these parameters were only normalized during the recovery period, theresultant nitrogen balance was then not enough positive as required for the muscle protein gain,hence contributing to the age-related incomplete muscle mass recovery. We tested free leucinesupplementation (an amino acid known for its stimulatory effect on protein metabolism) during therecovery period to improve muscle mass gain. This supplementation induced a greater muscleprotein synthesis in supplemented animals, but without any muscle mass gain. However, wedemonstrated here for the first time that muscle protein accretion after immobilization-inducedatrophy could be achieved with whey protein or high protein diets.In conclusion, we demonstrated that immobilization in old rats induced a muscle mass atrophyfollowed by an incomplete recovery, hence contributing to the development of sarcopenia. We alsodemonstrated that this lack of recovery cannot be overcome by a dietary free leucinesupplementation, despite a positive effect on protein metabolism, contrarily to high protein andwhey protein diets.

O objetivo deste trabalho foi investigar o efeito da castração, tempo de confinamento, metabolismo celular e regiões do musculo sobre a oxidação proteica e lipídica e outras características de qualidade da carne bovina. Oitenta e quatro bovinos (castrados e inteiros) Nelore, confinados por diferentes períodos, foram usados para conduzir estudos em músculos Longissimus dorsi e Biceps femoris. O segundo musculo foi dividido em duas porções: origem (PO) e inserção (PI). No estudo com L. dorsi, bifes foram embalados sob condições de aerobiose (PVC) e anaerobiose (vácuo) e maturados por 1, 3, 5, 7 e 9, e 1, 7, 14 e 21 dias, respectivamente. Para este músculo, nenhuma diferença na estabilidade oxidativa [tióis, carbonilas e Substancias Reativas ao Ácido Tiobarbiturico (TBARS)] e cor entre as carnes dos animais inteiros e castrados foram encontradas. Isto poderia ser explicado pela falta de diferença no status oxidativo inicial, mensurados através da atividade de enzimas antioxidantes, conteúdo de glutationa total e composição de ácidos graxos, entre as condições sexuais. Os resultados também indicaram que a oxidação dos bifes embalados a vácuo leva o dobro de dias para iniciar, em comparação aos bifes em aerobiose. No estudo com o Bíceps femoris, os animais foram abatidos com 59 e 129 dias de confinamento e os bifes da PO e PI foram maturados por 1, 30, 60 e 100 dias. Os resultados da atividade das enzimas lactato desidrogenase e citrato sintase mostraram que a PO tem metabolismo mais oxidativo (aeróbio) e a PI glicolítico (anaeróbio). A carne dos animais inteiros tiveram menor TBARS e maior luminosidade (L*), perda de peso por cocção (PPC) e força de cisalhamento (FC) em comparação aos animais castrados. A PO foi mais susceptível a oxidação proteica (menor tióis) em comparação a PI. A carne dos animais confinados por 129 dias tiveram maiores PPC e oxidação proteica (menores tióis) em comparação a carne dos animais confinados por 59 dias. Diferenças de estabilidade oxidativa entre a carne de animais castrados e inteiros confinados por menor período desapareceram quando os animais foram confinados por maior período. Valores de pH e tióis na carne dos animais castrados e inteiros foram afetados pelo tempo de maturação. Ambas as condições sexuais tiveram carne com maior valores de pH no dia 30 de maturação e este, se manteve ao longo do tempo. A PO teve maiores valores de TBARS no dia 60, PPC no dia 100 e FC nos dias 30 e 60 de maturação em comparação a PI. Foi observada uma interação entre tempo de confinamento e tempo de maturação para tióis, TBARS, metamioglobina, pH, L* e FC. Quando comparado aos animais confinados por 59 dias, os animais confinados por 129 dias tiveram: maior oxidação (maior TBARS e menor tióis) nos dias 60 e 100 de maturação; oxidação da mioglobina (metamioglobina) mais tardia, sendo o maior valor obtido no dia 100; menor luminosidade (L*) em todos os tempos de maturação; maior maciez (menor FC) aos 100 dias de maturação. Os animais confinados por 59 dias tiveram: maior oxidação proteica (menor tióis) e maciez (menor FC) aos 30 dias de maturação. De forma geral, todos os efeitos testados tais como castração, tempo de confinamento, metabolismo celular e regiões do musculo pareceram influenciar sobre a oxidação proteica e lipídica e outras características de qualidade da carne bovina. / The objective of this work was to investigate the effect of the castration, time on confinement, cellular metabolism and muscle region on the protein and lipid oxidation, and other traits of beef quality. Eight-four Nellore cattle (steers and bulls), confined for different periods, were used to conduct studies in Longissimus dorsi and Biceps femoris muscles. The latter muscle was divided in two portions: origin (OP) and insertion (IP). In the study of L. dorsi muscle, steaks were packaged under aerobiosis (PVC) and anaerobiosis (vacuum) conditions and aged for 1, 3, 5, 7 and 9, and 1, 7, 14 and 21 days, respectively. For this muscle, no differences in oxidative stability [thiols, carbonyls and Thiobarbituric Acid Reactive Substances (TBARS)] and color between the meat from bulls and steers were found. This could be explained by the lack of differences in initial oxidative status, measured through the activity of the antioxidants enzymes, content of total glutathione and composition of fatty acids, between the sexual conditions. The results also indicated that the oxidation of the steaks vacuum-packaged took about twice more days to start than the steaks under aerobiosis. In the study of Biceps femoris muscle, the animals were slaughtered after 59 and 129 days on confinement and the steaks from OP and IP were aged for 1, 30, 60 and 100 days. The results of the lactate dehydrogenase and citrate synthase enzymes activity showed that the OP has a more oxidative metabolism and the IP has a more glycolytic metabolism. The meat from bulls had lower TBARS and higher lightness (L*), cooking loss (CL) and shear force (SF) in comparison with steers. The OP was more susceptible to protein oxidation (lower thiols) than the IP. Animals confined for 129 days had meat with higher CL when compared to those ones confined for 59 days. The meat from animals confined for 129 days had higher CL and protein oxidation (lower thiols) in regard to the meat from animals confined for 59 days. Differences in oxidative stability between the meat from steers and bulls confined for shorter period disappeared when the animals were confined for larger period. Values of pH and thiols in meat from steers and bulls were affected by the time of aging. Both the sexual conditions had meat with higher pH values at the day 30 of aging and this was kept across the time. The OP had higher values of TBARS at the day 60, CL at the day 100 and SF at the days 30 and 60 of aging when compared to the IP. It was observed an interaction between confinement time and aging time for thiols, TBARS, metmyoglobin, pH, L* and SF. When compared to the animals confined for 59 days, the animals confined for 129 days had: higher oxidation (higher TBARS and lower thiols) at the days 60 and 100 of aging; oxidation of myoglobin (metmyoglobin) slower, since the higher value was obtained at the day 100; lower lightness (L*) in all the times of aging; tender meat (lower SF) at 100 days of aging. The animals confined for 59 days had: higher protein oxidation (lower thiols) and tender meat (lower SF) at 30 days of aging. Overall, all the effects tested such as castration, time on confinement, cellular metabolism and muscle region seemed to influence on the protein and lipid oxidation and other traits of beef quality.

A proteólise é provavelmente o fenômeno mais importante que ocorre durante a maturação da maioria dos tipos de queijos e influencia fortemente suas características de aroma, sabor e textura. Neste trabalho estudou-se a aplicação de diferentes técnicas analíticas para extração e determinação dos compostos nitrogenados liberados durante a maturação do queijo Prato, compostos esses indicadores da extensão e da profundidade da maturação. Complementando esses estudos, utilizou-se métodos mais específicos como eletroforese em uréia-PAGE e RP-HPLC para avaliação dos peptídeos e aminoácidos formados. Os resultados mostraram que as frações nitrogenadas estudadas e os métodos utilizados na avaliação direta da proteólise se mostraram adequados para uso em análises de rotina. A determinação espectrofotométrica da tirosina e triptofano comprovou ser uma metodologia adequada para avaliação da intensidade de maturação, podendo ser usada como um método rápido alternativo ao de Kjeldahl. Os grupamentos amínicos livres analisados com TNBS ou ninidrina-cádmio também são técnicas mais rápidas e de fácil execução, além de fornecer informações que refletem melhor as degradações das proteínas durante a maturação. O acompanhamento da proteólise do queijo Prato ao longo da maturação indicou alto grau de associação entre os resultados obtidos em todos os métodos utilizados, sugerindo que todos podem ser empregados na sua avaliação e monitoramento. A avaliação instrumental da textura demonstrou a correlação dos atributos adesividade, elasticidade e coesividade com os outros índices usados na avaliação da proteólise, evidenciando que as alterações percebidas pelos consumidores podem ser medidas por parâmetros objetivos. A análise eletroforética demonstrou o aumento na concentração de peptídeos ao longo da maturação, sendo evidente o desdobramento gradual da &#945;s1-caseína formando a fração &#945;s1-I (f24-199) e da &#946;-caseína, formando as frações &#947;1, &#947;2 e &#947;3. A análise por RP-HPLC também demonstrou um aumento no número de picos durante a maturação, com maior variação naqueles eluídos nas regiões intermediária e final da separação. / Proteolysis is probably the most important biochemical event which occurs during the ripening of most cheese varieties, with a major impact on flavour and texture. This work is about the application of different analytical techniques for extraction and determination of the nitrogen fractions liberated during the maturation of Prato cheese. These compounds are indicators of the extension and depth of maturation. Complementing these studies, more specific methods such as urea-PAGE electrophoresis and RP-HPLC were applied. The results showed that the nitrogen fractions studied and the methodology used in direct evaluation of the proteolysis are of potential for use in routine applications. The spectrophotometric determination of tyrosine and tryptophane confirmed that this procedure is good for estimating the extent of cheese ripening. Although they are considered gross indices, they could be used as an alternative fast method for Kjeldahl. Determinations of total free aminic groups by reaction with TNBS or ninhydrincadmium are also fast and easy. Proteolysis of Prato cheese during the maturation showed a high degree of correlation with the results obtained in all tested methods, suggesting that all of them can be used for its evaluation and monitoring. Instrumental measurement of texture indicated correlation of the attributes adhesiveness, elasticity and cohesiveness with the other indices used for proteolysis evaluation, meaning that the alterations noticed by the consumers can be measured by objective parameters. Electrophoretical analysis demonstrated an increase in peptides concentration as ripening progressed, revealing a gradual breakdown of &#945;s1-casein to &#945;s1-I (f24-199). There was a degradation of &#946;-casein with a concomitant increase in concentration of &#947;-caseins. The RP-HPLC analysis also showed an increase in the number of peaks, with large variation in those eluted in the middle and final portion of the chromatogram.

<p>Postmortem aging has been extensively practiced as value-adding process due to the beneficial impacts on meat palatability. Meat tenderization occurred through proteolytic fragmentation of myofibrillar structural proteins via endogenous protease systems, which is considered as the primary drive to enhance major palatability attributes including tenderness, juiciness, and flavor. Recent theoretical framework proposes apoptosis, or programmed cell death, as the preceding step that initiates postmortem proteolysis. Whereas small heat shock proteins have been consistently recognized as meat quality biomarkers, probably due to their protective activities against proteolysis through anti-stress, anti-apoptotic, and chaperoning functionalities. To shed light on detailed mechanisms controlling postmortem proteolysis and consequential impacts on the development of fresh meat quality characteristics, postmortem proteolytic changes of small heat shock proteins, apoptotic factors, and myofibrillar structural proteins were profiled in postmortem skeletal muscles under different metabolic backgrounds and across species. </p> <p>In beef, three muscles, <i>longissimus lumborum</i> (LL), <i>semimembranosus</i> (SM), and <i>psoas major</i> (PM), have been selected to represent glycolytic, intermediate, and oxidative muscle types. Tenderness and water - holding capacity were determined, and proteolysis, apoptotic features, and small heat shock proteins were measured in 8 beef carcasses at 1, 2, 9, 16, and 23 days of aging. PM exhibited limited aging potential in quality developments shown by lower extents of shear force, water-holding capacity, and proteolytic changes, including calpain 1 autolysis, troponin T, and HSP27 compared to LL and SM. Conversely, LL had an increase in tenderization and water-holding capacity, which was accompanied with more extended calpain 1 autolysis, proteolysis and HSP27 degradation, compared with other muscles. The results of this study suggest that postmortem proteolytic changes of myofibrillar proteins, small HSPs and apoptotic factors occur in a muscle-specific manner, which is likely attributed to different rate and extent of meat quality developments of each muscle during aging. </p> <p>Callipyge lambs are a unique genetic background showing calpastatin over-expression, muscle hypertrophy in loin and hindquarter area, substantially compromised meat tenderization potential, and a shift of muscle fiber composition towards fast-glycolytic directions. Proteome and metabolome changes in muscles from callipyge mutation (+/C) and non-callipyge phenotype (+/+, C/+, and C/C) lambs were profiled to provide insight into the biochemical changes affecting meat quality attributes. M. longissimus thoracis from lambs with all four possible callipyge genotype (n = 4, C/+, C/C, +/C, and +/+) were collected after 3d aging and analyzed using mass-spectrometry based platforms. Among identified proteomes, cytochrome c (pro-apoptotic protein) was detected with significantly lower abundances in +/C. Anti-apoptotic HSP70, BAG3, and PARK7 were over-abundant in +/C, which could result in delayed apoptosis and possibly attributed to tougher meat in callipyge lambs. Eight glycolysis enzymes were overabundant in +/C lambs, whereas 3 enzymes involved in TCA cycle were overabundant in non-callipyge ones (C/C and/or C/+). Twenty-five metabolites were affected by genotypes (P < 0.05), including metabolic co-factors, polyphenols, and AA/short peptides.</p> <p>Pig production is facing increased public pressure regarding antibiotic usage restriction. Recently, dietary L-glutamine at cost effective level (0.2%) was identified as an effective antibiotic alternative in post-transport nursery pig diets. To evaluate carcass and meat quality characteristics in market-ready pigs when 0.2% dietary L-glutamine was applied as for early-life post-weaning and transport recovery, pigs (N=480) were weaned and transported in two replication trials in SPRING (April of 2017) vs. SUMMER (July of 2016), fed 3 different diets (Non: no antibiotic, Anti: 441 ppm chlortetracycline and + 38.6 ppm tiamulin, Gln: 0.20% L-glutamine) for 14 days after transport, and fed basal diet until reaching market weight. Pairs of <i>longissimus dorsi</i> (LD) and <i>psoas major</i> (PM) muscles from each carcass (n=10/diet/trial) were separated at 1 d and 7 d postmortem, respectively. Carcass yield and meat physical and quality attributes were evaluated. Overall impacts of Gln on physical attributes of carcasses and porcine muscles were minimal. No dietary effects were found in carcass, proximate composition, water-holding capacity, or shear force. Significant difference between trials were found in terms of productivity and pork/carcass qualities, where SPRING replicates showed increased body weight, faster pH decline, paler surface color, higher intra-muscular fat deposition, and improved tenderness and water-holding capacity as indicated by lower shear force values, thaw-purge loss, and cooking loss (P < 0.05).</p> <p>The pork and carcass quality results give rise to a postulation that different metabolism and animal growth might have been occured between the two production trials, consequentially differentiated meat quality development. In this regard, myofibrillar proteolysis, small heat shock proteins, and apoptotic factors were characterized during 7 d postmortem aging in porcine LD and PM muscles from both seasonal trials, combined with metabolomics profiles of 1d samples using the GC-TOF-MS/MS platform. Compared to SUMMER counterparts, SPRING muscles showed concurrence of more extended apoptosis, further calpain 1 autolysis, and increased structural protein degradation (P<0.05). SPRING muscles showed more ATP catabolism compounds and increase in carbohydrates, branched-chain amino acids, and 16-18 carbon fatty acids, which could be chemistry fingerprints of increased cellular oxidative stress, consequentially favoring onset of apoptosis and proteolysis. Meanwhile, SUMMER pigs showed increased stress-defending metabolites, such as ascorbic acid, antioxidant amino acids, and decreased inhibitory neuro-transmitter GABA, which may indicate elevated stress-defending activity in SUMMER pigs that possibly inhibited apoptosis and proteolysis. </p>

M42 aminopeptidases are dinuclear enzymes widely found in prokaryotes but completely absent from eukaryotes. They have been proposed to hydrolyze peptides downstream the proteasome or other related proteolytic complexes. Their description relies mainly on the pioneering work on four M42 aminopeptidases from Pyrococcus horikoshii. Their quaternary structure consists of twelve subunits adopting a tetrahedral-shaped structure. Such a spatial organization allows the compartmentalization of the active sites which are only accessible to unfolded peptides. The dodecamer assembly results from the self-association of dimers under the control of the metal ion cofactors. Both oligomers have been shown to co-exist in vivo and heterododecamers with broadened substrate specificity may even occur. Yet, the molecular determinants behind the dodecamer assembly remain unknown due the lack of a high-resolution structure of a stable dimer. In addition, the bacterial M42 aminopeptidases are still ill-described due to the paucity of structural studies. This work focuses mainly on the characterization of TmPep1050, an M42 aminopeptidase from Thermotoga maritima. As expected, TmPep1050 adopts the genuine tetrahedral-shaped structure with twelve subunits. It also displays a leucyl-aminopeptidase activity requiring Co2+ as a cofactor. In addition to its catalytic function, Co2+ has a role in the enzyme thermostability and oligomerization. The absence of Co2+ provokes the disassembly of active TmPep1050 dodecamers into inactive dimers. The process, however, is reversible since Co2+ triggers the self-association of dimers into dodecamers, as shown by native MS. The main achievement of this work is the determination of the first high-resolution structure of a dimer, allowing to better understand the dimer-dodecamer transition. Several structural motifs involved in oligomerization are displaced or highly flexible in the TmPep1050 dimer structure. Furthermore, a loop bringing two catalytic relevant residues is displaced outside the catalytic site. These residues are the catalytic base and a ligand involved in the Co2+ binding at the M1 site. The metal ion binding sites have been further investigated to define how they influence the oligomerization of TmPep1050. A mutational study shows that the M1 site strictly controls the dodecamer formation while the M2 site contributes only partly to it. A strictly conserved aspartate residue of the M2 site second shell also plays an important structural role in maintaining the active site integrity. Indeed, its substitution prevents the formation of dodecamer probably due to the lack of stabilization of the active site loop. The characterization of TmPep1050 supports that bacterial M42 aminopeptidases probably share the quaternary structures and dodecamer assembly with their archaeal counterparts. The dimer structure highlights several structural modifications occurring in the dimer-dodecamer transition. Yet, based on current knowledge, no general rules can be drawn for the role of the M1 and M2 sites in oligomerization. Besides, the physiological function of the M42 aminopeptidases is under-examined albeit the proposed link to the proteasome. In this work, this has been investigated using the Escherichia coli M42 aminopeptidases as a model. Yet, no phenotype has been associated to the deletion of their coding genes. Preliminary results have shown that the three enzymes (i) display a redundant substrate specificity, (ii) could be localized partly to the membrane, and (iii) form heterocomplexes. Further experiments are still required to crack the function of these M42 aminopeptidases. / Option Biologie moléculaire du Doctorat en Sciences / info:eu-repo/semantics/nonPublished

Most patients diagnosed with cancer will receive systematic chemotherapy at some point during their illness, which almost always cause severe side effects for the patients such as, anemia, nausea and vomiting. The problems with today’s chemotherapy is not only that it cause severe side effects, but also that the cancer may develop resistance to the therapy, which is why the development of a new type of therapeutic agent is in dire need. The ubiquitin proteasome system (UPS) is a vital machinery for the cancer cells to maintain protein homeostasis, which also make them vulnerable to any disruption of this system. In recent years, a new technology has been developed that utilize the UPS by chemically bringing an E3 ubiquitin ligase into close proximity of a protein of choice and tagging the protein with ubiquitin for degradation. This technology is called proteolysis targeting chimera (PROTAC). In this project, we managed to theoretically develop a new type of cancer therapeutic agent, that utilize the PROTAC system together with the first-in-class proteasome regulatory subunit, POH1, inhibitor Capzimin as a warhead. By using Capzimin as a warhead it should be possible to polyubiquitinate POH1, and thus induce proteotoxic stress in the cancer cells to trigger apoptosis. This theoretically developed drug is therefore called Capzimin-PROTAC, which should be able to trigger apoptosis in cancer cells, and at the same time being relatively safe to normal healthy cells.