Métodos microbiológicos tradicionais como isolamento, coloração de Gram e testes bioquímicos auxiliam na identificação do gênero Streptococcus, no entanto, as espécies apresentam ampla variação fenotípica, tornando difícil a identificação ou diferenciação das mesmas apenas por estes métodos. Uma das espécies mais importantes em suínos, Streptococcus suis, tem provocado grandes prejuízos em todo o mundo e tem sido descrito como uma importante zoonose em alguns países. S. suis está presente nas vias respiratórias superiores, colonizando principalmente tonsilas, cavidades oral e nasal facilitando a alta disseminação por contato direto, principalmente em leitões entre 4 e 12 semanas de vida. Os quadros clínicos mais frequentes em suínos infectados pelo S. suis são meningite, artrite e pneumonia. O objetivo do presente estudo foi identificar estirpes do gênero Streptococcus mediante as técnicas de reação em cadeia pela polimerase (PCR), sequenciamento parcial do gene 16S rRNA e espectrometria de massa MALDI-TOF (MALDI-TOF MS). As análises por PCR e por MALDI-TOF MS resultaram na identificação de 215 estirpes como S. suis e 35 como diferentes espécies pertencentes ao gênero Streptococcus. Os resultados da identificação das 35 estirpes pertencentes a outras espécies do gênero Streptococcus pelo MALDI-TOF MS foram confirmados pelo sequenciamento parcial do gene 16S rRNA, sendo que as duas técnicas apresentaram 100% de concordância. Os resultados obtidos indicam grande eficácia na utilização das técnicas avaliadas para a identificação de S suis e de outras espécies do gênero Streptococcus. A técnica de MALDI-TOF MS, apesar do custo elevado do equipamento, apresentou a vantagem de ser rápida, apresentar baixo custo por análise e reduzida utilização de material / Traditional microbiological methods such as isolation, Gram staining and biochemical tests help to identify the Streptococcus genus, however, the species present broad phenotypic variation, making it difficult for their identification or even differentiation just by these methods. One of the most important species in swine, Streptococcus suis, has led to great losses worldwide and has been described as an important zoonosis in some countries. S. suis is present in the upper airways, especially colonizing tonsils, oral and nasal cavities facilitating the high dissemination by direct contact, especially among piglets between 4 to 12 weeks of age. The most common clinical manifestations in pigs infected by S. suis are meningitis, arthritis and pneumonia. The aim of this study was to identify Streptococcus strains by polymerase chain reaction (PCR), 16S rRNA gene partial sequencing and MALDI-TOF mass spectrometry (MALDI-TOF MS). PCR and MALDI-TOF MS analysis resulted in the identification of 215 strains as S. suis and 35 as different species of the Streptococcus genus. The identification of the 35 strains belonging to other species of the genus by MALDI-TOF MS was confirmed by 16S rRNA gene partial sequencing, and both techniques presented 100% concordance. These results demonstrate the high efficiency in the use of the evaluated techniques for the identification of S. suis and the other species of the Streptococcus genus. The MALDI-TOF MS technique, despite the equipment high cost, presented the advantage of being fast, have low cost per analysis and reduced material usage

Métodos microbiológicos tradicionais como isolamento, coloração de Gram e testes bioquímicos auxiliam na identificação do gênero Streptococcus, no entanto, as espécies apresentam ampla variação fenotípica, tornando difícil a identificação ou diferenciação das mesmas apenas por estes métodos. Uma das espécies mais importantes em suínos, Streptococcus suis, tem provocado grandes prejuízos em todo o mundo e tem sido descrito como uma importante zoonose em alguns países. S. suis está presente nas vias respiratórias superiores, colonizando principalmente tonsilas, cavidades oral e nasal facilitando a alta disseminação por contato direto, principalmente em leitões entre 4 e 12 semanas de vida. Os quadros clínicos mais frequentes em suínos infectados pelo S. suis são meningite, artrite e pneumonia. O objetivo do presente estudo foi identificar estirpes do gênero Streptococcus mediante as técnicas de reação em cadeia pela polimerase (PCR), sequenciamento parcial do gene 16S rRNA e espectrometria de massa MALDI-TOF (MALDI-TOF MS). As análises por PCR e por MALDI-TOF MS resultaram na identificação de 215 estirpes como S. suis e 35 como diferentes espécies pertencentes ao gênero Streptococcus. Os resultados da identificação das 35 estirpes pertencentes a outras espécies do gênero Streptococcus pelo MALDI-TOF MS foram confirmados pelo sequenciamento parcial do gene 16S rRNA, sendo que as duas técnicas apresentaram 100% de concordância. Os resultados obtidos indicam grande eficácia na utilização das técnicas avaliadas para a identificação de S suis e de outras espécies do gênero Streptococcus. A técnica de MALDI-TOF MS, apesar do custo elevado do equipamento, apresentou a vantagem de ser rápida, apresentar baixo custo por análise e reduzida utilização de material / Traditional microbiological methods such as isolation, Gram staining and biochemical tests help to identify the Streptococcus genus, however, the species present broad phenotypic variation, making it difficult for their identification or even differentiation just by these methods. One of the most important species in swine, Streptococcus suis, has led to great losses worldwide and has been described as an important zoonosis in some countries. S. suis is present in the upper airways, especially colonizing tonsils, oral and nasal cavities facilitating the high dissemination by direct contact, especially among piglets between 4 to 12 weeks of age. The most common clinical manifestations in pigs infected by S. suis are meningitis, arthritis and pneumonia. The aim of this study was to identify Streptococcus strains by polymerase chain reaction (PCR), 16S rRNA gene partial sequencing and MALDI-TOF mass spectrometry (MALDI-TOF MS). PCR and MALDI-TOF MS analysis resulted in the identification of 215 strains as S. suis and 35 as different species of the Streptococcus genus. The identification of the 35 strains belonging to other species of the genus by MALDI-TOF MS was confirmed by 16S rRNA gene partial sequencing, and both techniques presented 100% concordance. These results demonstrate the high efficiency in the use of the evaluated techniques for the identification of S. suis and the other species of the Streptococcus genus. The MALDI-TOF MS technique, despite the equipment high cost, presented the advantage of being fast, have low cost per analysis and reduced material usage

O Actinobaculum suis é um dos principais micro-organismos relacionados a infecções de trato urinário em fêmeas suínas. As características de crescimento deste agente dificultam o isolamento bacteriano tradicional, o que pode tornar a sua prevalência subestimada. Este estudo teve por objetivos desenvolver a reação em cadeia pela polimerase (PCR) para detecção do A. suis, avaliar a sensibilidade e especificidade desta técnica e comparar seu desempenho com o isolamento bacteriano. Além disso, as cepas isoladas foram caracterizadas através do polimorfismo de comprimento de fragmentos amplificados (AFLP) e submetidas à determinação da concentração inibitória mínima para caracterização dos perfis de susceptibilidade antimicrobiana. Foram analisados 45 suabes prepuciais de machos e 192 urinas de fêmeas suínas provenientes de três granjas. Os resultados indicaram que a PCR desenvolvida foi específica para o A. suis e apresentou limiar de detecção entre 1,0 X 101 UF/mL e 1,0 X 102 UFC/mL. A frequência de A. suis encontrada através da PCR foi de 82,2% (37/45) nos suabes prepuciais e de 8,9% (17/192) nas urinas de fêmeas. No que se refere ao isolamento, nenhuma das amostras de urina foi positiva para o agente, enquanto 31,1% (14/45) dos suabes foram positivos. A partir das amostras positivas isoladas dos suabes prepuciais foram selecionadas 20 cepas de A. suis. Os perfis de susceptibilidade entre estas cepas foram semelhantes, no entanto diferiram dos isolados utilizados como controle e provenientes de uma fêmea com infecção urinária. A técnica de PCR foi mais eficiente que o isolamento na identificação de amostras positivas para A. suis. Através do AFLP com uma única enzima foi possível caracterizar todos os isolados e relacionar os dados obtidos com a origem das cepas e o perfil de resistência. Até o presente não há relatos na literatura de caracterização genotípica de A. suis através do AFLP ou detecção do agente através da PCR. / Actinobaculum suis is an important agent related to urinary infection in swine females. The growth characteristics of this agent hamper the traditional bacterial isolation, which can make their prevalence underestimated. The purpose of this study was to develop the polymerase chain reaction (PCR) for Actinobaculum suis detection, to evaluate the sensitivity and specificity of this technique and compare the results with bacterial isolation. Moreover, the isolates were characterized by amplified fragment length polymorphism (AFLP) and subjected to determination of minimum inhibitory concentration for characterization of the antimicrobial susceptibility profiles. Forty-five preputial swabs from boars and a hundred and ninety-two urine samples from sows of three herds were analyzed. The results indicate that the developed PCR was specific for A. suis, presenting a limit detection between 1.0 X 101 UFC/ml and 1.0 X 102 UFC/ml. A.suis frequency by PCR was 82.2% (37/45) in male preputial swabs and 8.9% (17/192) in females urine. Through traditional isolation, none of the urine samples were positive, while A.suis growing was observed in 31.1% (14/45) of the swabs. From the positive samples of the preputial swabs were selected 20 A.suis strains. The susceptibility profiles among these strains were similar, but differed from the female isolates used as control. The PCR technique was more effective than isolation for the A.suis detection. The AFLP with a single enzyme was able to characterize all isolates and relate the data obtained with the strains origin and resistance profile. Until present, there are no reports of genotypic characterization of A. suis strains through AFLP or agent detection by PCR.

Mémoire numérisé par la Direction des bibliothèques de l'Université de Montréal.

Mémoire numérisé par la Direction des bibliothèques de l'Université de Montréal.

Feral hogs (Sus scrofa) are considered an exotic, free-ranging ungulate distributed within numerous countries and continents to include the United States. The reproductive efficiency, lack of predators, land use practices for domestic livestock (e.g., feeding stations, introduced water sources, intense cropping practices, etc.), and diet are leading factors in the expansion of feral hogs throughout their range. Feral hogs negatively impact floral and faunal communities, agricultural lands, and residential and recreational areas to include concerns with public safety and disease transmission. My study objectives were to (1) assess feral hog abatement strategies by (A) evaluating trap designs with the inclusion of electrical fencing, and (B) evaluating candidate baits for feral hog-specificity, and (2) assess prevalence levels for feral hog diseases. I evaluated 3 corral trap designs differing in the addition of electric fence configurations. Feral hog capture success data were collected and used to determine trap design efficacy. Treatments evaluated included (A) control corral trap with no electrical configurations, (B) corral trap with 1 electrical leg, and (C) corral trap with 2 electrical legs. ANOVA analyses suggest no differences (df = 2, P = 0.758) between trap designs; however, length of trapping effort (i.e., the number of days that trapping occurred) was a significant (df = 6, P < 0.001) factor in determining trap success. Pre-baiting was an important factor in observed trapping success. Trapping success declined after fourth day of continuous trapping. I recommend short, intensive trapping efforts (e.g., <4 days) when using corral traps in feral hog abatement programs. I also evaluated 14 candidate baits (with and without repellant) replicated 40 times to determine feral hog specificity. Three evaluated baits (i.e., PIGOUT™ strawberry, corn, and rice) were selected (df = 2, P < 0.05) more frequently by feral hogs than other combinations. Non-target species (e.g., raccoons) visited baits with repellants less (df = 2, P < 0.05) than baits without repellants. Repellant had no direct impact on feral hog visitation at bait sites. Trapping data also suggests that grains commonly farmed in local or regional areas are more likely to be consumed by feral hogs and, therefore considered in baiting options. Finally, of 412 feral hogs captured, 86 were sampled for prevalence of pseudorabies and Brucella suis. The prevalence of pseudorabies and B. suis was 20.9% and 13.9%, respectively within the study area. Based on disease study results, I recommend that natural resource managers take necessary precautions to protect themselves by wearing protective equipment and equipment and properly cooking feral hog meat. Additionally, resource managers should properly administer vaccinations to domestic and companion animals, and restricting domestic and companion animals from areas of high risk (e.g., carcasses of dead hogs and wallows).

Zugl.: München, Univ., Diss., 2008

München, Universiẗat, Diss., 2008.

Pooled faecal specimens of pigs were collected from the floor on two farms (A and B) and parasitologically examined. Investigations were divided into the five period: winter 2005 (A), spring 2005 (A), autumn 2005 (B), winter 2006 (B) and spring 2006 (B). In total, we collected 249 faecal specimens of pigs, of them 91 specimens were collected from farm A and 158 specimens from farm B. In farm A we collected 32 specimens from post-weaned piglets and in farm B 20 specimens from post-weaned piglets. Piglets were housed on litter stabling on both farms.

Submitted by Helena Bejio (helena.bejio@unioeste.br) on 2017-11-16T18:52:34Z No. of bitstreams: 2 Fábio HR Silveira 2016.pdf: 2555885 bytes, checksum: 29051e06e2f268f821a9b563e9878402 (MD5) license_rdf: 0 bytes, checksum: d41d8cd98f00b204e9800998ecf8427e (MD5) / Made available in DSpace on 2017-11-16T18:52:34Z (GMT). No. of bitstreams: 2 Fábio HR Silveira 2016.pdf: 2555885 bytes, checksum: 29051e06e2f268f821a9b563e9878402 (MD5) license_rdf: 0 bytes, checksum: d41d8cd98f00b204e9800998ecf8427e (MD5) Previous issue date: 2016-03-14 / Coordenação de Aperfeiçoamento de Pessoal de Nível Superior - CAPES / This study aims to assess the farm size effect and parturition order on the occurrence and the logarithm of the egg count per gram of endo- stool in commercial sows housed in the maternity and pregnancy in situated farms in West micro-region Paraná. The 43 Production Units Piglets, set in eight micro-regions, classified into four farm sizes: small (100 to 250 arrays), medium (251-510 arrays), large (511-1000 arrays) and very large (more than 1,000 dies ) and three orders calving up to two deliveries, 3 to 5 and more than 5 deliveries. The feces samples were processed through flotation technique saturated salt solution. Statistical analysis was based on the theory of generalized linear models, the observed data variables expressed by binary values were adjusted to the binomial and the normal distributions. The existing significance farm size (TG), birth order (PO), interaction between TG and OP was verified by the deviance analysis Of the 1,596 fecal samples, 4.64% were positive for Ascaris suum, 0, Trichuris suis to 56% and 8.27% for oocysts of coccidia. Properties with small and medium farm size have a higher percentage of parasites when compared with large and very large, especially in farrowing order between zero and two deliveries. The younger females removed a greater amount of Ascaris suum and Trichuris suis. / O presente estudo tem por objetivo avaliar o efeito de tamanho de granja e ordem de parição sobre a ocorrência e o logaritmo da contagem de ovos por grama de fezes de endoparasitas em matrizes suínas comerciais alojadas na maternidade e gestação em granjas situadas na microrregião do Oeste do Paraná. As 43 Unidades Produtoras de Leitões, inseridas em oito microrregiões, classificadas em quatro tamanhos de granja: pequena (100 a 250 matrizes), média (251 a 510 matrizes), grande (511 a 1.000 matrizes) e muito grande (mais que 1.000 matrizes) e em três ordens de parição: até 2 partos, 3 a 5 e mais que 5 partos. As amostras de fezes foram processadas por meio da técnica de flutuação em solução saturada de sal. A análise estatística foi realizada com base na teoria dos modelos lineares generalizados, os dados observados de variáveis expressas por valores binários foram ajustados às distribuições binomial e normal. A significância existente de tamanho de granja (TG), ordem de parto (OP), interação entre TG e OP foi verificada por meio da análise de deviance, Das 1.596 amostras fecais coletadas, 4,64% foram positivas para Ascaris suum, 0,56% para Trichuris suis e 8,27% para oocistos de coccídeos. As propriedades com tamanho de granja pequeno e médio possuem uma porcentagem mais elevada de parasitas quando comparada com as grandes e muito grandes, principalmente nas de ordem de parição entre zero e dois partos. As fêmeas mais novas eliminaram uma maior quantidade de ovos de Ascaris suum e Trichuris suis.