A bothropasina é uma proteína hemorrágica de 48 kDa, pertencente à classe P-III das metaloproteases, isolada a partir do veneno bruto da serpente brasileira Bothrops jararaca, e que possui os domínios adesivos desintegrina (D) e rico em cisteína (C). Neste trabalho, nós apresentamos a estrutura cristalográfica da bothropasina complexada ao inibidor POL647. O domínio catalítico , metaloprotease (M), pode ser dividido em dois subdomínios, dispostos de maneira muito similar aos descritos para essa família de metaloproteases de venenos de serpentes (em inglês \"SVMPs\"), que inclui os sítios de ligação ao zinco e ao cálcio. A cisteína livre, resíduo Cys189, está localizado em um núcleo hidrofóbico e, sendo assim, impossibilitado de fazer pontes dissulfeto ou qualquer outra interação. O domínio D não apresenta estruturas secundárias bem definidas, sendo constituído, majoritariamente, por estruturas desordenadas como \"loops\", porém estabilizados por 7 pontes dissulfeto e por dois íons cálcio. A região do motivo ECD está localizada em um \"loop\" e é estruturalmente relacionado à região RGD das desintegrinas-RGD, derivadas de SVMPs da classe P-II. O motivo ECD é estabilizado pela ponte dissulfeto Cys277-Cys310 (entre os domínios D e C), além de um íon cálcio. A cadeia lateral do Glu276 do motivo ECD está exposta ao solvente. Na bothropasina, a região hiper variada (em inglês HVR), descrita para outras P-III de SVMPs, presente no domínio C, de fato, é bastante conservada quando comparada a outros membros da classe P-III de diversas espécies. Nós propomos que esse subgrupo deva ser referido como PIII-HCR (região altamente conservada) SVMPs. Ainda é proposto que as diferenças estruturais dos domínios D, C ou DC possam estar envolvidas em uma melhor adaptação da estrutura na interação com diferentes alvos, além do reconhecimento e especificidade a um substrato para o domínio M. / Bothropasin is a 48kDa hemorrhagic P-III metalloprotease isolated from the venom of the Brazilian snake Bothrops jararaca, which has the disintegrin (D) and cysteine-rich (C) adhesive domains. We present the crystal structure of the bothropasin complexed with the inhibitor POL647. The catalytic domain, metalloprotease (M), consists of two subdomains in a very similar scaffold to the ones described for other snake venom metalloproteases (SVMPs) including the zinc and calcium binding sites. The free cysteine, residue Cys189, is in a hydrophobic core and it is not available for disulfide bonding or other interactions. The D domain does not have a defined secondary structure, but instead is composed by mostly loops stabilized by seven disulfide bonds and by two calcium ions. The ECD region is in a loop and it is structurally related to the RGD region of RGD-disintegrins, which are derived from P-II SVMPs. The ECD motif is stabilized by the Cys277-Cys310 disulfide bond (between D and C domains) and by one calcium ion. The side chain of the Glu276 of the ECD motif is solvent exposed. In bothropasi, the HVR (hyper-variable region) described for other P-III SVMPs in the C domain in fact presents a well conserved sequence with respect to several other P-III members from different species. We propose that this subset be referred to as PIII-HCR (highly-conserved region) SVMPs. We further propose that the structural differences in the D, C or DC domains may be involved in selecting target binding which in turn could generate substrate diversity or specificity for the M domain.

Worldwide, sea turtles are especially vulnerable immediately after emerging from nests. Many monitoring programs measure hatchling production from nest inventories. These inventories rarely account for mortality occurring post-emergence, leaving an incomplete estimate of hatchling production. This study addresses the nest-to-surf data gap for Florida’s east coast nesting assemblages of loggerhead sea turtles (Caretta caretta). Five locations were surveyed during the 2016 nesting season by using infrared time-lapse imagery, night vision optics, and track maps. Over all beaches, 7.6% of the observed hatchlings did not survive to reach the water. Mortality sources varied by location. Observed predators included: foxes, bobcats, yellow-crowned night herons, ghost crabs, and gulls. Hatchling disorientation and misorientation occurred more frequently in urban areas than natural areas. Factors including number of hatchlings emerging, nest-to-surf distance, and urbanization may help managers estimate nest-to-surf mortality. This study will improve life history models that serve as foundations of conservation management. / Includes bibliography. / Thesis (M.S.)--Florida Atlantic University, 2017. / FAU Electronic Theses and Dissertations Collection

As fosfolipases A2 (PLA2s) são enzimas que induzem vários efeitos farmacológicos e geralmente, correspondem a maior porcentagem do conteúdo protéico dos venenos de serpentes. Desta forma, o isolamento e a caracterização bioquímica, funcional e estrutural de PLA2s poderão gerar informações importantes para o melhor entendimento dos efeitos farmacológicos e de efeitos tóxicos ocasionados por estas proteínas. Através de dois métodos cromatográficos (troca-iônica em CM-Sepharose e hidrofóbica em Phenyl-Sepharose) foi isolada uma isoforma de fosfolipase A2 ácida presente na peçonha da serpente Bothrops moojeni, denominada de BmooPLA2. Quando submetida à eletroforese em gel de poliacrilamida com agente desnaturante, BmooPLA2 apresentou massa molar relativa de aproximadamente 14.000. A proteína isolada, BmooPLA2, possui uma única cadeia polipeptídica, pI~5,2, é rica em aminoácidos hidrofóbicos, ácidos e possui 14 resíduos de cisteína. Esta isoforma pH-termoestável apresentou alta atividade fosfolipásica. A enzima induziu edema moderado in vivo, na concentração de 25 g. Além disso, a BmooPLA2 foi capaz de inibir a agregação plaquetária de modo dose dependente e induzir efeito hipotensor nas concentrações de 15 e 30 g . Foi realizada também a construção da biblioteca de cDNA da glândula de peçonha da serpente Bothrops moojeni, onde o cDNA que codifica a proteína BmooPLA2 foi clonado e a proteína recombinante expressa em E. coli. Todos os ESTs (Expressed Sequence Tags) foram classificados de acordo com a homologia de sua estrutura primária com sequências conhecidas. As sequencias codificando para toxinas representaram cerca de 30% do total de sequências identificadas. De acordo com o transcriptoma, as toxinas mais expressas pela serpente Bothrops moojeni são as metaloproteases (SVMP), as quais correspondem a aproximadamente 77% das toxinas encontradas. A proteína recombinante apresentou a mesma sequência de aminoácidos, atividade fosfolipásica e efeito inibitório sobre plaquetas, observados para a proteína nativa BmooPLA2, sugerindo que a recBmooPLA2 foi expressa, purificada e reenovelada em sua forma ativa. Como nenhum estudo abordou a participação das PLA2s ácidas de Bothrops nos processos inflamatórios e os mecanismos envolvidos na liberação desses mediadores, particularmente os prostanóides, as toxinas nativa e recombinante foram avaliadas quanto ao seu efeito sobre a resposta inflamatória (ensaios sobre leucócitos in vitro), avaliando a expressão da enzima COX-2 e liberação do prostanóide PGE2, além de outros mediadores como TXB4 e LTB2, após a incubação com macrófagos isolados, in vitro. Com estes resultados foi possível uma melhor compreensão da composição da peçonha desta serpente, bem como um melhor entendimento da participação das PLA2s ácidas envenenamento ofídico, abrindo novas perspectivas para sua aplicação biotecnológica. / The phospholipase A2 (PLA2s) are enzymes that induce various pharmacological effects and usually correspond to a higher percentage of the protein content of snake venoms. Thus, isolation, biochemical, functional and structural characterization of PLA2s may generate important information for a better understanding of the pharmacological effects and toxicity induced by these proteins. Through two chromatographic steps (ion exchange on CMSepharose and hydrophobic in Phenyl-Sepharose) an acidic phospholipase A2 isoform was isolated from the venom of the snake Bothrops moojeni and named BmooPLA2. Its biochemical and partial functional characterization were also performed. When submitted to electrophoresis on polyacrylamide gel with denaturing agent (SDS-PAGE), BmooPLA2 presented relative molar mass of approximately 14,000. The isolated protein, BmooPLA2, has a single polypeptidic chain, pI ~ 5.2, is rich in hydrophobic amino acids and has 14 cysteine residues. This pH-thermostable isoform showed high phospholipasic activity. The enzyme induced moderate edema in vivo, at the concentration of 25 g. In addition, BmooPLA2 was able to inhibit platelet aggregation in a dose dependent manner and showed hypotensive effect at different concentrations (15 and 30 g). It was also carried out the construction of the cDNA library from the venom gland of the snake Bothrops moojeni, where the cDNA encoding the protein BmooPLA2 was cloned and a recombinant protein expressed in E. coli. All ESTs (Expressed Sequence Tags) were classified according to their primary structure homology with known sequences. The sequences coding for toxins accounted for approximately 30% of all identified sequences. According to the transcriptome, the majority of the toxins expressed by the snake Bothrops moojeni are metalloproteases (SVMP), which correspond to approximately 77% of the toxins found. The recombinant protein presented the same amino acid sequence, phospholipase activity and inhibitory effect on platelets, observed for the native BmooPLA2, suggesting that recBmooPLA2 was expressed, purified and refolded in its active form. Since no study has addressed the involvement of acidic PLA2s from Bothrops genus upon inflammatory processes and the mechanisms involved in the release of such mediators, particularly prostanoids, native and recombinant toxins were evaluated for their effects on the inflammatory response (essays on leukocytes in vitro), evaluating the expression of COX-2 and prostanoid release of PGE2, as well as other mediators as TXB4 and LTB2, after incubation with isolated macrophages, in vitro. With these results it was possible to better understand the composition of the venom of this snake, and a better understanding of the role of acidic PLA2s on the snake envenomation, opening new perspectives for its biotechnological application.

The inhibitory effects on Escherichia coli ATPase activity by two venom peptides, lasioglossin II and mastoparan B. Membrane bound F1FO ATP synthase was isolated from E. coli strain pBWU13.4/DK8 and treated with varied concentrations of lasioglossin II and mastoparan B. Lasioglossin II caused very low inhibition of ATPase activity, but the inhibition profile of mastoparan B was suggestive of an interesting biological effect. A relatively shorter total length, a smaller net positive charge, and a reduced amphipathic character of both peptides, as compared to previously tested antimicrobial peptides, may account for the limited degree of inhibition observed in the present study.

ATP is the main cellular energy generated by the enzyme ATP synthase in almost all organisms from bacteria to vertebrates. While malfunction of the ATP synthase complex is responsible for several disease conditions, the enzyme itself can be used as a potent molecular drug target to combat many diseases including microbial infections, cancer, tuberculosis, and obesity. Recent widespread escalation of antibiotic resistant microbes in general and E. coli in particular demands novel alternative approaches to combat microbial infections. Inhibition of ATP synthase by inhibitors such as peptides is known to deprive microbes of required energy, resulting in microbial cell death. Therefore, we have examined the venom peptide induced inhibition of E. coli ATP synthase. It was found that venom peptides completely inhibited E. coli ATP synthase and the process of inhibition was found to be fully reversible. This study also links the antimicrobial properties of peptides in part to the inhibition of ATP synthase. Thus, selective use of ATP synthase as a molecular drug may have an important impact on biology and medicine.

Les biotechnologies de la reproduction sont aujourd’hui largement utilisées dans le contrôle de la fertilité animale et humaine. Ces techniques présentent cependant des rendements faibles et font actuellement l’objet de nombreuses recherches. Ce travail de thèse s’inscrit dans ce contexte et se focalise sur la recherche de nouvelles molécules pro-fertilité dans l’espèce bovine, et s’articule autour de deux axes : le premier consiste à tester les propriétés pro-fertilité d’une enzyme du métabolisme lipidique sur la maturation ovocytaire, la fécondation et le développement embryonnaire préimplantatoire in vitro, et le deuxième à découvrir des molécules permettant d’améliorer la fécondance des spermatozoïdes. Nous démontrons ici que l’application de l’enzyme améliore de manière significative le nombre et la qualité des embryons au stade blastocyste. Un savoir-faire quant à l’utilisation de cette enzyme (fenêtre de traitement, concentration,…) a été développé. Cette thèse a également permit de caractériser différents composés avec des propriétés différentes dont une molécule originale permettant d’augmenter la vitesse des spermatozoïdes. Ce composé est prometteur car il est aussi actif sur des spermatozoïdes issus du testicule, de l’épididyme ou de l’éjaculat, avant ou après congélation. / The reproductive biotechnologies are now widely used in control of animal and human fertility. However, these technics have low yields and are currently the subject of much research. In this context, the present thesis focuses on the search for new pro-fertility molecules in cattle, organized around two axis : the first one is to test the pro-fertility properties of an enzyme from lipid metabolism on maturation, fertilization and preimplantation embryo development in vitro, and the second one is to discover molecules to improve sperm fertilizing ability. Here, we show that application of the enzyme significantly improve the number and quality of embryos at the blastocyst stage. Expertise in the use of this enzyme (time of treatment, concentration, etc.) was developed. This thesis also allowed the characterization of different compounds with different properties. Among them, one original molecule increase sperm velocity. This compound is promising because it works on sperm from the testis, epididymis or ejaculate before or after freezing.

Conifer seed-infesting chalcids of the genus Megastigmus (Hymenoptera: Torymidae) are important forest pests. At least one species, M. spermotrophus Wachtl, has been shown to be able to manipulate the seed development of its host, Douglas-fir (Pseudotsuga menziesii) in remarkable ways, such as redirecting unfertilized ovules that would normally abort. The mechanism of host manipulation is currently unknown. Microbial associates and venoms are two potential mechanisms of host manipulation. Microbial associates are emerging as an important player in insect-plant interactions. There is also evidence that venoms may be important in gall-induction by phytophagous wasps. PCR and 16S rRNA pyrosequencing was used to characterize the microbial associates of Megastigmus and transcriptomic sequencing was used to identify putative venoms that were highly expressed in female M. spermotrophus. The common inherited bacterial symbionts Wolbachia and Rickettsia were found to be prevalent among several populations of Megastigmus spp. screened using a targeted PCR approach. A member of the Betaproteobacteria, Ralstonia, was identified as the dominant microbial associate of M. spermotrophus using 16S rRNA pyrosequencing. The transcriptome of M. spermotrophus was assembled de novo and three putative venoms were identified as highly expressed in females. One of these putative venoms, Aspartylglucosaminidase, (AGA) appears to have originated through gene duplication within the Hymenoptera and has been identified as a major venom component of two divergent parasitoid wasps. AGA was identified as a promising candidate for further investigation as a potential mechanism of early host manipulation by M. spermotrophus. / Graduate / 0353 / 0410 / 0715 / apaulson@shaw.ca

Made available in DSpace on 2014-06-11T19:35:44Z (GMT). No. of bitstreams: 0 Previous issue date: 2010-03-25Bitstream added on 2014-06-13T20:26:46Z : No. of bitstreams: 1 fox_egp_dr_rcla.pdf: 11908045 bytes, checksum: 51950c150a0c19f5015ed7839fd628c3 (MD5) / Universidade Estadual Paulista (UNESP) / A formiga lava-pés Solenopsis saevissima Smith está entre os insetos que mais causam acidentes no Brasil, e é uma espécie pouco estudada. A presente série de investigações tenta suprir um pouco da necessidade de estudos com esta importante espécie no Brasil. Primeiramente são relatados detalhes da biologia de S. saevissima em comparação com outras espécies de formigas lava-pés: pela primeira vez é mostrada uma lista de artrópodes associados a estes formigueiros no Brasil, incluindo uma série de novos táxons, dos quais um é aqui descrito; as larvas desta espécie são descritas e comparadas com o que se sabe sobre as larvas de outras lava-pés, sendo visto que as semelhanças encontradas são extensas demais para permitir a utilização de caracteres larvais para filogenia e taxonomia em nível de espécie. Ainda na morfologia, são apresentados resultados de análise ultraestrutural do aparato de veneno por meio de microscopia ótica e eletrônica, onde é mostrado que as diferentes regiões do órgão apresentam especializações para a produção de cada um dos compostos do veneno. A composição do veneno desta espécie foi analisada pela primeira vez, onde verificou-se que acima de 90% do veneno de S. saevissima é composto de isômeros cis e tras de um mesmo alcalóide piperidinico oleoso, sendo o restante uma solução aquosa de toxinas protéicas, incluindo neurotoxinas, fosfolipases, e alérgenos. De uma forma geral, o veneno de S. saevissima tem uma diversidade menor de compostos que o de Solenopsis invicta, podendo figurar entre os motivos que explicam porque a espécie S. invicta é uma espécie invasora e S. saevissima não. São apresentados pela primeira vez evidências químicas da existência de espécies crítpticas dentro de S. saevissima. Tomados em conjunto, os resultados suprem um pouco da carência de estudos com as formigas lava-pés... / The fire ant Solenopsis saevissima Smith is one of the insects most frequently involved in accidents in Brazil, yet being a poorly studied species. The series of studies presented here aimed at filling some of this gap in knowledge about this common and important ant species. Some aspects of the field biology of S. saevissima are shown in comparison with other fire ants: a unique list of associated arthropods collected from field inspections in Southern Brazil is given, which includes several new taxa, one of which is herein described for the first time. The larvae of S. saevissima are described for the first time and compared with larvae from close species, culminating with the demonstration that larval characters within this group cannot be feasibly employed in species-level phylogenetic and taxonomic analyses. In terms of internal anatomy, a detailed ultrastructural description of the venom apparatus of S. saevissima is given, wherein special emphasis was given to the particular organisation of each region of the apparatus, suggesting there are specialised areas for the production of each venom compound. The venom of this species was subject of biochemical analyses for the first time, generally illustrating that the venom of S. saevissima is >90% made of a simple mixture of cis- and trasundecil- pyperidinic alkaloids, being the remainder an aqueous solution of toxic proteins, comprising neurotoxins, and traces of phospholipases and allergens. The venom of S. saevissima proved being less diverse in toxins than the venom of Solenopsis invicta, possibly explaining why S. invicta is a successful invasive species while S. saevissima apparently is not. Moreover, herein is included the first record of intraspecific variation in the nature of venom alkaloids, providing biochemical evidence for the existence of cryptic species in S. saevissima. Taken together, the obtained... (Complete abstract click electronic access below)

As raias são peixes peçonhentos e estão frequentemente associadas a acidentes em seres humanos, principalmente na região Norte do Brasil, favorecidos pelo hábito desses peixes de permanecerem no fundo de águas rasas e pela contínua utilização humana dos rios. Os ferrões das raias causam lesões dolorosas, edema, necrose, e o muco que recobre toda a extensão do corpo desses peixes pode aumentar a gravidade desses ferimentos. O objetivo deste trabalho foi avaliar a resposta imunológica induzida pelo muco de Paratrygon aiereba nativo ou irradiado por raios gama de 60Co em modelos animais. Foram realizados ensaios imunoenzimáticos e Western blotting para verificar a resposta humoral e reatividade cruzada dos soros provenientes de camundongos Swiss e coelhos New Zealand previamente imunizados contra o veneno, muco nativo ou irradiado. A indução da produção de anticorpos in vitro, as subclasses de IgG e a quantificação de citocinas foram analisados. Além de realizados ensaios de soroneutralização da atividade edematogênica in vitro e in vivo e de viabilidade celular. Os dados foram analisados estatisticamente por meio de análise de variância. O protocolo de imunização possibilitou a obtenção de soros com títulos satisfatórios de anticorpos policlonais. O muco e veneno de P. aiereba são imunogênicos e apresentam reatividade antigênica. O muco nativo ou irradiado induziu a produção de anticorpos IgG e esses reconheceram antígenos presentes no muco de outras espécies de raias. Células esplênicas de animais imunizados contra o muco irradiado produziram IFN-γ, TNF- α e IL-10 e também foi observada a produção sérica de TNF-α (grupo imunizado contra o muco irradiado) e de IL-6 e IL-17 (grupo imunizado contra o muco nativo). O soro anti-muco irradiado reduziu a atividade edematogênica in vitro, ao contrária da in vivo que não foi neutralizada. Os resultados corroboram o uso da radiação ionizante, com produção de anticorpos altamente responsivos e melhor resposta imune, além de comprovar que o muco de Paratrygon aiereba foi capaz de estimular resposta imune adaptativa celular e humoral. / Freshwater stingrays are venomous animals, frequently associated with accidents in northern Brazil where the shallow waters and the human use of the rivers favour close proximity between the fish and potential victims. Ray stings induce painful lesions, edema, necrosis, and the mucus that covers the body of these fishes may increase the severity of the wounds. The aim of this work was to evaluate the immune response induced by native or 60Co Paratrygon aiereba mucus in animal models. Enzyme linked immunosorbent assays and western blots were performed to compare humoral immune response as well as cross reactivity using antibodies raised in mice or rabbits against venom or mucus, the latter either in its native or irradiated form. Antibody production in vitro, immunoglobulins subclasses and cytokines production were evaluated. Immunization resulted in good levels of antibodies. Interestingly, both the mucus and the venom share many cross reactive components. Furthermore, antibodies raised against native mucus or its irradiated counterpart were cross-reactive against the mucus of other stingray species. Splenic cells from mice immunized with irradiated mucus secreted IFN-γ, TNF-α and IL-10. The serum raised against irradiated mucus reduced edematogenic activity in vitro, but not in vivo, when the venom and the serum are injected separately. Our results corroborate the potential of ionizing radiation as a detoxifying agent for immunogens, with production of high antibody titers and, that the highly abundant mucus of freshwater stingrays contains basically the same repertoire of antigens as the venom, inducing the synthesis of high levels of neutralizing antibodies.

Made available in DSpace on 2014-06-11T19:24:15Z (GMT). No. of bitstreams: 0 Previous issue date: 2012-09-10Bitstream added on 2014-06-13T18:20:27Z : No. of bitstreams: 1 gasparotto_vpo_me_botfm.pdf: 823732 bytes, checksum: 72bbebb42d3239b78a28393a5aa3b0b7 (MD5) / Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES) / Universidade Estadual Paulista (UNESP) / O estudo avaliou a viabilidade in vitro do biomaterial “Selante de Fibrina derivado de veneno de serpente” (SF), como arcabouço para células tronco mesenquimais (CTMs) de ratos. O SF é um material caracterizado como adesivo biológico, e foi produzido e fornecido pelo Centro de Estudos de Venenos e Animais Peçonhentos, CEVAP, Brasil. As CTMs foram coletadas a partir da medula óssea de fêmures e tíbias de ratos e foram caracterizadas por meio de citometria de fluxo com auxilio de marcadores positivos: CD 44 e CD 90 (CTMs) e marcador negativo: CD 34 (células tronco hematopoiéticas). Cultivos foram induzidos para diferenciarem-se em linhagens específicas (osteogênico, condrogênico e adipogênico). Para avaliação do crescimento in vitro e a viabilidade celular em conjunto ao biomaterial foram utilizadas microscopia óptica de luz invertida, microscopia de fluorescência e microscopia eletrônica de varredura e transmissão. O SF em contato com as CTMs não induziu a diferenciação espontânea para as linhagens osteogênica, condrogênica e adipogênica. As diferentes técnicas de avaliação microscópica utilizadas mostraram que o SF foi capaz de realizar a captura e manutenção das CTMs e houve interação das células com o interior e superfície do biomaterial. Portanto, a coleta, o cultivo e a caracterização das CTMs de ratos foram possíveis. O SF mostrou-se eficiente como arcabouço biológico e interagiu com as células tronco mesenquimais mantendo-as viáveis, oferecendo-se como uma ferramenta de uso clínico-cirúrgico alternativa para processos regenerativos visando terapias mais eficientes / This study evaluated the in vitro viability of biomaterial Fibrin Sealant (FS) derived from snake venom as a scaffold for rat mesenchymal stem cells (MSCs). The FS is characterized as a biological adhesive material, and is produced and was supplied by the Center for the Study of Venoms and Venomous Animals, CEVAP, Brazil. MSCs were collected from the bone marrow of femurs and tibias of rat and were characterized using flow cytometry with CD 44 and CD 90 positive markers (MSC) and CD34 negative marker (mononuclear stem cells). Cultivations were induced to differentiate into specific cell lineage (osteogenic, chondrogenic and adipogenic). To evaluate the in vitro growth and cell viability with the biomaterial were used inverted light optical microscopy, fluorescence microscopy and scanning electron microscopy and transmission. The SF did not cause the spontaneous differentiation in contact with MSCs to osteogenic, chondrogenic and adipogenic lineage. Different microscopy techniques showed that the SF was able to accomplish the capture and maintenance of MSCs and there was interaction with the cell interior and surface of the biomaterial. Finally, the collection, cultivation and characterization of rat MSCs were possible. The SF was effective as a biological scaffold and interacted with the MSCs keeping them viable offering itself as a tool for clinical and surgical alternative providing clinical and surgical therapies more efficient for regenerative processes