Submitted by Erika Demachki (erikademachki@gmail.com) on 2015-01-29T18:42:14Z No. of bitstreams: 2 Tese - Luiz Augusto Pereira - 2008.pdf: 11628724 bytes, checksum: 97ca17282a858a05078e31d8a06bfefe (MD5) license_rdf: 23148 bytes, checksum: 9da0b6dfac957114c6a7714714b86306 (MD5) / Approved for entry into archive by Erika Demachki (erikademachki@gmail.com) on 2015-01-29T18:42:52Z (GMT) No. of bitstreams: 2 Tese - Luiz Augusto Pereira - 2008.pdf: 11628724 bytes, checksum: 97ca17282a858a05078e31d8a06bfefe (MD5) license_rdf: 23148 bytes, checksum: 9da0b6dfac957114c6a7714714b86306 (MD5) / Made available in DSpace on 2015-01-29T18:42:52Z (GMT). No. of bitstreams: 2 Tese - Luiz Augusto Pereira - 2008.pdf: 11628724 bytes, checksum: 97ca17282a858a05078e31d8a06bfefe (MD5) license_rdf: 23148 bytes, checksum: 9da0b6dfac957114c6a7714714b86306 (MD5) Previous issue date: 2008-09-04 / Coordenação de Aperfeiçoamento de Pessoal de Nível Superior - CAPES / Paracoccidioides brasiliensis, an important human pathogen causative of paracoccidioidomycosis (PCM), a systemic mycosis with broad distribution in Latin America. Adhesion to and invasion of host cells are essential steps involved in the infection and dissemination of pathogens. Furthermore, pathogens use their surface molecules to bind to host extracellular matrix components to establish infection. An adhesin of P. brasiliensiswas isolated from two dimensional electrophoresis and characterized. Peptides obtained by partial sequencing of the isolated protein, which presenteda molecular mass of 29 kDa and pI 5.8, were subjected to sequence analysis of their amino acids, that revealed strong homology to triose phosphate isomerase (TPI) from several sources. The complete cDNA and gene encoding TPI of P. brasiliensis (PbTPI) were characterized and both contained an open reading frame predicted to encode a 249 amino acid protein that presented all the peptides characterized in the native PbTPI. The complete coding PbTPI cDNA was cloned and over expressed in Escherichia coli host. The purified recombinant TPI was used to produce polyclonal antibody in rabbit. By immunoelectron microscopy and Western blot analysis, TPI was detected in the cell wall and the cytoplasm of the yeast phase of P. brasiliensis. The expression of PbTPI was analyzed in transition from mycelia to yeast phase. The native PbTPI is preferentially expressed in the yeast parasitic phase of P. brasiliensis. The recombinant PbTPI was found to bind to laminin and fibronectin in ligand far-Western blot assays. TPI binds preferentially to laminin, as determined by peptide inhibition assays. Of special note, the treatment of P. brasiliensisyeast cells with anti-PbTPI polyclonal antibody and the incubation of pneumocytes and VERO cells with the recombinant protein promoted inhibition of adherence and internalization of P. brasiliensisto those in vitrocultured cells. These observations indicate that TPI could be contribute to the adhesion of the microorganism to host tissues and to the dissemination of infection. / Paracoccidioides brasiliensis é um importante patógeno humano que causa a paracoccidioidomicose (PCM), uma micose sistêmica com ampla distribuição na América Latina. A adesão e a invasão de células são eventos essenciais envolvidos na infecção e disseminação do patógeno. Para isso, patógenos utilizam suas moléculas de superfície para se ligar a componentes da matriz extracelular e estabelecer a infecção. Uma proteína antigênica de P. brasiliensisfoi isolada a partir do gel de eletroforese bidimensional de proteínas totais do fungo e caracterizada. Peptídeos obtidos por sequenciamento parcial da proteína de 29 kDa e pI 5.8 mostraram homologia com triose fosfato isomerase (TPI) de diversos organismos. O cDNA e o gene completos que codificam para TPI de P. brasiliensis (PbTPI) foram caracterizados, e ambos contém uma ORF que codifica para uma proteína com 249 aminoácidos que apresenta todos os peptídeos caracterizados na PbTPI nativa. O cDNA completo que codifica para PbTPI foi expresso em Escherichia coli. A proteína recombinante TPI foi utilizada para produção de anticorpo policlonal em coelho. Através de imunomicroscopia de transmissão eletrônica e análises por Western blotting, foi detectada a presença da TPI, na parede celular de leveduras de P. brasiliensis e no citoplasma. A expressão da PbTPI foi analisada na transição das fases de micélio para levedura. A PbTPI nativa está preferencialmente expressa na fase parasitária de P. brasiliensis. A PbTPI recombinante foi capaz de se ligar a laminina e fibronectina em ensaios de Western blotting de afinidade. PbTPI se liga preferencialmente a laminina, como foi determinado por ensaio de inibição com peptídeos sintéticos. Uma observação importante, é que tanto o tratamento de P. brasiliensiscom anticorpo anti-PbTPI, quanto de pneumócitos e células VERO tratados com a TPI recombinante, promoveram considerável inibição da aderência e internalização de P. brasiliensisàs células cultivadas in vitro. Essas observações indicam que a TPI possivelmente contribui para a adesão do microrganismo aos tecidos do hospedeiro e para a disseminação da infecção.

ABSTRACT Nontypable Haemophilus influenzae is a common cause of otitis, sinusitis and conjunctivitis. It is the most common bacterial pathogen associated with chronic obstructive pulmonary disease (COPD). Studies have shown that nonpathogenic Haemophilus haemolyticus are often mistaken for Haemophilus influenzae due to an absent hemolytic reaction on blood agar. Distinguishing H. haemolyticus from H. influenzae is important to prevent unnecessary antibiotic use, and to understand the role of H. influenzae in clinical infections. In this study, PCR-primers for amplifying 16S rDNA sequences were used to set up a method for distinguishing H. haemolyticus from H. influenzae. The aim was to use the method for analyzing apparent H. influenzae strains, to investigate if some strains were in fact H. haemolyticus. However, because of problems with unspecific primerannealing,no conclusions could be drawn regarding misclassification of H. haemolyticus. Moraxella catarrhalis is the second most common bacterial pathogen associated with COPD. It also causes otitis and sinusitis. An important virulence factor of M. catarrhalis is the outer membrane protein Moraxella catarrhalis IgD-binding protein (MID). One part of the protein; MID764-913 , has been shown to function as an adhesin, and this part has been fragmented to further investigate its adhesive properties. The aim of this second, independent study, was to express some of these proteinfragments by cloning in E. coli. The time spent on this project was too short, and no proteins could be expressed duing this period.

A biofilm, which is associated with 80% of chronic infections in humans, is formed when bacteria aggregate, attach to a substrate and secrete a matrix protecting the bacteria from host cell defenses and antibiotics. Bartonella henselae (B. henselae) is the causative agent of cat scratch disease, persistent bacteremia, and one of the most frequently reported causes of blood-culture negative endocarditis (BCNE) in patients. The ability of B. henselae to adhere to the heart valve, form a biofilm and vegetation to cause endocarditis increases the morbidity and mortality rate in infected patients. The presence of a trimeric autotransporter adhesin (TAA) called Bartonella adhesin A (BadA) has been linked to biofilm formation in B. henselae. BadA is a protein of 3036 amino acids and a member of the TAAs found in Bartonella and other Gram-negative bacteria. The function of BadA has been studied in vitro and is critical for agglutination, host cell adhesion and activation of a pro-angiogenic host response. However, very little is known about badA gene regulation or the molecular basis of biofilm formation. This work aims to determine whether BadA is necessary for the establishment of biofilms and how the bacteria regulate badA expression. Using genetic mutations, real-time cell adhesion assay, RT-qPCR, and microscopy, it was shown that BadA is required for biofilm formation. Using an in-frame complete deletion strain of badA, a reduced ability to form a biofilm was observed which was restored in the deletion strain complemented with a partial badA. Analysis of the B. henselae transcriptome shows nine highly transcribed, homologous RNAs, termed Bartonella regulatory transcript (Brt1-9). The Brts are short-sized (<200 >nucleotides), highly expressed, and located in an intergenic region indicative of small RNAs (sRNA). The Brts are predicted to form a stable stem and loop structure with a potential terminator/riboswitch region on the 3′ end. Located ~20 nucleotides downstream of each Brt is a poorly transcribed helix-turn-helix DNA binding protein gene termed transcriptional regulatory protein (trps 1-9). High brt transcription stops just before the start of the trp implicating the 3’ loop of the Brt as a terminating loop. Replacement of the trp with a gfp reporter gene shows that in the absence of the 3′ end of Brt1, gfp is transcribed. Also consistent with our findings, an increase in both the transcription of trp1 and badA and the formation of a biofilm in mutants of the brt1 gene was observed. Furthermore, to determine the role of the Trp in regulating badA, an electrophoretic mobility shift assay was carried out. The data confirms that Trp1 binds the promoter region of badA gene to regulate gene expression. In summary, the brt1/trp1 regulon affects badA transcription and biofilm formation in B. henselae. Understanding the mechanism and condition(s) by which the brt/trp regulatory system regulates badA is a plausible approach to the development of treatments that target the formation of biofilm-related diseases and persistent bacteremia in humans.

No description available.

No description available.

Anaplasma phagocytophilum and A. marginale are the etiologic agents of bovine anaplasmosis and human granulocytic anaplasmosis, respectively. As obligate intracellular pathogens, binding and entry of host cells is a prerequisite for survival. The molecular events associated with these processes are poorly understood. Identifying the adhesins mediating binding, delineating their key functional domains, and determining the molecular determinants to which they bind not only benefits better understanding of Anaplasma spp. pathobiology, but could also benefit the development of novel approaches for protecting against infection. We previously demonstrated that A. phagocytophilum outer membrane protein A (ApOmpA) is critical for bacterial binding and entry host through recognition of α2,3-sialic acid and α1,3-fucose of its receptors, including 6-sulfo-sLex. In this study, we determined that two amino acids, G61 and K64, within its binding domain (ApOmpA59-74), are essential for ApOmpA function. We also confirmed the ability of ApOmpA to act as an adhesin and invasin as it conferred adhesiveness and invasiveness to inert beads. We next extended our studies to A. marginale as it also expresses OmpA (AmOmpA) and its role in infection has not been studied. Molecular models of ApOmpA and AmOmpA were nearly identical, especially in the ApOmpA binding domain and its counterpart in AmOmpA. Antisera raised against AmOmpA or its putative binding domain inhibit A. marginale infection. AmOmpA G55 and K58 are contributory and K59 is essential for AmOmpA to bind to host cells. AmOmpA binding is dependent on α2,3-sialic acid and α1,3-fucose. Coating inert beads with AmOmpA conferred the ability to bind to and be taken up by host cells, confirming that it acts as an adhesin and invasin. 6-sulfo-sLex is dispensable for AmOmpA binding and A. marginale infection. ApOmpA works cooperatively with Asp14 (14-kDa A. phagocytophilum surface protein) to promote optimal infection of host cells. We found that Asp14 is conserved across A. phagocytophilum strains and in A. marginale and confirmed the ability of Asp14 to act as an adhesin and invasin as it conferred adhesiveness and invasiveness to inert beads. Collectively, this work advances our understanding of A. phagocytophilum and A. marginale adhesion and invasion of host cells.

A mastite subclínica em caprinos é causada principalmente pelo Staphylococcus spp., sendo os estafilococos coagulase negativa (SCN) os patógenos de maior ocorrência e o S. aureus, a espécie de estafilococos mais pesquisada. Dessa forma, pouco se conhece sobre a patogenicidade de SCN e outros estafilococos coagulase positiva (SCP), além do S. aureus. Também há poucos estudos sobre a variação da viabilidade celular na mastite subclínica de cabras. Assim, o objetivo do presente estudo foi determinar os fatores de virulência de adesão e produção de biofilme de estirpes de Staphylococcus spp. isoladas de amostras de leite de cabras, verificando possíveis associações com a viabilidade celular. Para realizar a colheita das amostras, primeiramente, foi efetuada um exame físico da glândula mamária, com posterior realização dos testes da caneca de fundo preto e California mastitis test (CMT). A colheita do leite foi efetuada em três alíquotas: análises microbiológicas, contagem de células somáticas (CCS) e viabilidade celular. Realizou-se a identificação, teste de antibiograma e PCR (Reação em cadeia polimerase) dos Staphylococcus spp. isolados nas amostras de leite. Os genes de virulência pesquisados no PCR foram: cna, eno, ebpS, fnbA, fnbB, fib e bap. Avaliou-se a quantidade de CCS, em equipamento de citometria de fluxo, e a viabilidade celular, após centrifugações das amostras de leite e visualização das células em microscópio, utilizando o corante azul de Trypan. Os resultados foram: 122 amostras com crescimento bacteriano e dessas, 110 (90,2%) foram identificadas como Staphylococcus spp., sendo 90 (73,8%) de SCN e 12 (16,4%) de SCP. As espécies mais isoladas de estafilococos foram: S. epidermidis (24,55%), S. lugdunensis (15,40%) e S. intermedius (13,64%). As amostras apresentaram maior resistência aos antimicrobianos: penicilina (81,8%), oxacilina (60,0%) e ampicilina (55,5%). Observou-se maior sensibilidade para: enrofloxacina (99,1%), eritromicina (98,2%), gentamicina (98,2%) e vancomicina (98,2%). Com relação aos fatores de virulência pesquisados, foram encontradas amostras positivas para todos os genes, com exceção do gene fnbB: eno (53,6%), bap (43,7%), ebpS (19,1%), fnbA (18,2%) e fib (16,4%). Mais de um gene foi detectado em algumas estirpes, sendo que as associações de maior ocorrência foram: bap/eno em SCN e ebpS/eno/fib/fnbA em SCP. Os valores da CCS das amostras de leite com isolamento de Staphylococcus spp., SCN e SCP foram maiores do que nas amostras sem isolamento bacteriano e as estirpes com presença da associação de genes ebpS/eno/fib/fnbA apresentaram maior CCS do que bap/eno. Com relação à viabilidade celular, as amostras com isolamento de Staphylococcus spp. apresentaram maior viabilidade celular do que as amostras sem isolamento bacteriano e não houve associação dos genes identificados nas estirpes com a viabilidade celular. Concluiu-se que os genes eno e bap apresentaram maior ocorrência nas estirpes de Staphylococcus spp., sendo os mais encontrados nos isolados de SCN e os genes ebpS, fib e fnbA foram os mais detectados nos SCP. A viabilidade celular foi maior nas amostras com isolamento de Staphylococcus spp. em relação as sem isolamento bacteriano e não houve associação entre os fatores de virulência das estirpes de Staphylococcus spp. e a viabilidade celular. / Subclinical mastitis in goats is mainly caused by Staphylococcus spp., coagulase-negative staphylococci (CNS) is the most frequent pathogens and S. aureus, the most researched specie of staphylococci. Thus, little is known about the pathogenicity of SCN and other coagulase-positive staphylococci (CPS), beyond the S. aureus. There are few studies on the variation of cell viability in subclinical mastitis of goats. The aim of the present study was to determine the virulence factors of adhesion and biofilm production of Staphylococcus spp. strains isolated from milk samples of goats, verifying for possible associations with cell viability. To collect samples, firstly, was performed a physical examination of the mammary gland, with subsequent tests for mug of black background and California mastitis test (CMT). Three aliquots of milk were collected: microbiological analysis, somatic cell count (SCC) and cell viability. Identification, antibiotic susceptibility testing and PCR (polymerase chain reaction) were performed of Staphylococcus spp. isolated from milk samples. Virulence genes researched in PCR were: cna, eno, ebpS, fnbA, fnbB, fib and bap. Evaluation of CCS, using flow cytometry equipment, and cell viability, after centrifugation of milk samples and visualization the cells in the microscope using Trypan blue dye, were performed. The results were: from 122 samples with bacterial growth, 110 (90.2%) were identified as Staphylococcus spp., 90 (73.8%) of CNP and 12 (16.4%) of the CNP. The most isolated staphylococci species were: S. epidermidis (24.55%), S. lugdunensis (15.40%) and S. intermedius (13.64%). Samples showed higher resistance to antimicrobials: penicillin (81.8%), oxacillin (60.0%) and ampicillin (55.5%). We observed higher sensitivity to: enrofloxacin (99.1%), erythromycin (98.2%), gentamicin (98.2%) and vancomycin (98.2%). Regarding virulence factors researched, positive samples were found for all genes, except fnbB gene: eno (53.6%), bap (43.7%), ebpS (19.1%), fnbA (18.2%) and fib (16.4%). More than one gene were detected in some strains, with the most frequent associations were bap/eno in CNS and ebpS/eno/fib/fnbA in CNP. The values of SCC of milk samples with isolation of Staphylococcus spp., CNS and CNP were higher than samples without bacterial isolation and the isolation of strains with combination of ebpS/eno/fib/fnbA genes showed higher SCC than bap/eno. Regarding cell viability, samples with isolation of Staphylococcus spp. showed higher cell viability than samples without bacterial isolation and there was no association of the genes identified in strains with cell viability. In conclusion, eno and bap genes were more frequent in Staphylococcus spp. strains, eno and bap genes were mostly found in isolated CNS and ebpS, fib and fnbA genes were more detected in CNP. Cell viability was higher in samples with isolation of Staphylococcus spp. compared those without bacterial isolation and there was no association between the virulence factors of Staphylococcus spp. strains and cell viability.

Helicobacter pylori (H. pylori) is a human-specific gastric pathogen which is responsible for a spectrum of diseases ranging from superficial gastritis to gastric and duodenal ulceration, and which is also highly associated with gastric cancer. The pathogenesis of severe gastric disorders caused by H. pylori is multifactorial and involves complex interactions between the microbe and the gastric mucosa. H. pylori expresses several adhesion proteins. These molecules have important roles in the establishment of persistent infection and chronic inflammation, which cause tissue damage. The aim of this thesis was to study the attachment of this bacterium to human gastric epithelium, mediated by blood group antigens in both health and disease. One of the bestcharacterized H. pylori adhesins is the histo-blood group antigen binding adhesin (BabA), which binds specifically to the Lewis b antigen (Leb) in the gastric mucosa. A protective mucus layer lines the stomach. The mucosal glycosylation patterns (GPs) vary between different cell lineages, different locations along the gastrointestinal (GI) tract and different developmental stages. In addition, GPs undergo changes during malignant transformation. MUC5AC is a mucin molecule produced by the surface epithelium. Three distinctly different types of human gastrointestinal tissue were studied by bacterial adherence analysis in situ. MUC5AC is the most important carrier of Leb and the new results demonstrate that it forms major receptors for H. pylori adherence. By analysing an H. pylori babA-deletion mutant, a novel adhesin-receptor binding mode was found. Surprisingly, the mutant bound efficiently to both human gastric mucosa and to gastric mucosa of Leb transgenic mice. The sialylated and fucosylated blood group antigen, sialyl-dimeric-Lewis x (sdiLex), was structurally identified as the new receptor. A positive correlation was found between adherence of H. pylori to sialyl-Lewis x (sLex) and elevated levels of inflammation response in the human gastric mucosa. These results were supported by detailed analysis of sialylated and fucosylated blood group antigen glycosylation patterns and, in addition, in situ bacterial adherence to gastric mucosa of experimentally challenged Rhesus monkey. The cognate sialic acid-binding adhesin (SabA) was purified by the retagging technique, and the corresponding sabA-gene was identified. H. pylori lipopolysaccharide (LPS) contains various Lewis blood group antigens such as Lewis x (Lex) and Lewis y (Ley). Additional bacterial adherence modes, which are independent of the BabA and/or SabA adhesins, could possibly be mediated by Lex interactions. Adherence of a clinical isolate and its corresponding Lex mutant to human gastric mucosa with various gastric pathologies was studied in situ. The results suggest that H. pylori LPS plays a distinct but minor role in promotion of bacterial adhesion. Taken together, the results suggest mechanisms for continuous selection of H. pylori strains, involving capacity to adapt to changes in the local environment such as shifts in cell differentiation and associated glycosylation patterns. Adherence of H. pylori is dependent on both the BabA and the SabA adhesin. Multi-step dependent attachment mechanisms may direct the microbes to distinct ecological niches during persistent infections, driving the chronic inflammation processes further toward the development of peptic ulcer disease and/or malignant transformation. Key words: H. pylori, BabA, adhesin, Lewis b, MUC5AC, sialyl-dimeric-Lewis x, chronic inflammation, SabA, Lewis x, LPS.

A relatively high percentage of porcine <i>Escherichia coli</i> isolates from cases associated with neonatal and post-weaning diarrhea are positive for the gene encoding the adhesin involved in diffuse adherence I (AIDA-I). This gene and its corresponding protein were first identified and characterized in <i>E. coli</i> strain 2787 isolated from human infantile diarrhea. Little is known about the role of the AIDA-I protein in pathogenesis of porcine enteric disease caused by AIDA-I positive E. coli and the properties of AIDA-I protein expressed by porcine AIDA-I positive <i>E. coli</i> isolates and its receptors. <p>In this study, we demonstrated that AIDA-I adhesin isolated from porcine AIDA-I positive <i>E. coli</i> PD20 and PD58 is an acidic protein consisting of five isoforms. It has a molecular weight (100 kDa) similar to the AIDA-I adhesin expressed by human AIDA-I positive <i>E. coli</i> strain 2787 and has a relatively high amino acid homology (78-87%) with it. Immunodetection of AIDA-I positive <i>E. coli</i> strains using polyclonal anti-AIDA-I antibodies had relatively low sensitivity and specificity, accordingly these tests are unlikely to be used for regular diagnostic detection. <p>Using affinity chromatography, we isolated from porcine intestinal mucus proteins that bind to purified AIDA-I adhesin. These proteins were separated by one- and two-dimensional electrophoresis and subjected to overlay Western blot with purified AIDA-I adhesin and AIDA-I positive <i>E. coli</i> to demonstrate 65 and 120 kDa (p65 and p120) proteins as AIDA-I binding proteins. The identity of p65 was not determined based on LCMS/MS data, whereas p120 was matched to two nuclear proteins (namely, DNA damage binding protein and splicing factor 3b) and one cytoplasmic protein, which is an IgG Fc binding protein. Based on similar amino acid homology, molecular weight, structural similarity to mucin and reported evidence of being secreted by goblet cells into the intestinal lumen, we think that the IgG Fc binding protein is the most likely candidate to serve as a potential receptor in intestinal mucus for AIDA-I adhesin.

A relatively high percentage of porcine <i>Escherichia coli</i> isolates from cases associated with neonatal and post-weaning diarrhea are positive for the gene encoding the adhesin involved in diffuse adherence I (AIDA-I). This gene and its corresponding protein were first identified and characterized in <i>E. coli</i> strain 2787 isolated from human infantile diarrhea. Little is known about the role of the AIDA-I protein in pathogenesis of porcine enteric disease caused by AIDA-I positive E. coli and the properties of AIDA-I protein expressed by porcine AIDA-I positive <i>E. coli</i> isolates and its receptors. <p>In this study, we demonstrated that AIDA-I adhesin isolated from porcine AIDA-I positive <i>E. coli</i> PD20 and PD58 is an acidic protein consisting of five isoforms. It has a molecular weight (100 kDa) similar to the AIDA-I adhesin expressed by human AIDA-I positive <i>E. coli</i> strain 2787 and has a relatively high amino acid homology (78-87%) with it. Immunodetection of AIDA-I positive <i>E. coli</i> strains using polyclonal anti-AIDA-I antibodies had relatively low sensitivity and specificity, accordingly these tests are unlikely to be used for regular diagnostic detection. <p>Using affinity chromatography, we isolated from porcine intestinal mucus proteins that bind to purified AIDA-I adhesin. These proteins were separated by one- and two-dimensional electrophoresis and subjected to overlay Western blot with purified AIDA-I adhesin and AIDA-I positive <i>E. coli</i> to demonstrate 65 and 120 kDa (p65 and p120) proteins as AIDA-I binding proteins. The identity of p65 was not determined based on LCMS/MS data, whereas p120 was matched to two nuclear proteins (namely, DNA damage binding protein and splicing factor 3b) and one cytoplasmic protein, which is an IgG Fc binding protein. Based on similar amino acid homology, molecular weight, structural similarity to mucin and reported evidence of being secreted by goblet cells into the intestinal lumen, we think that the IgG Fc binding protein is the most likely candidate to serve as a potential receptor in intestinal mucus for AIDA-I adhesin.