The mammalian adrenal gland (or suprarenal gland) is a small organ located on the superior aspect of the kidney. The central region of the gland, the medulla, consists of chromaffin cells, which release catecholamines into the blood during periods of stress. This is best known as the 'fight or flight' response and is regulated, in the adult animal, by neuronal signals from the cholinergic sympathetic fibres of the splanchnic nerve. Interestingly, in some mammals, such as rat and human, sympathetic innervation is immature at birth, yet the chromaffin cells can still secrete catecholamines in response to physiological stessors, e.g. hypoxia. Increased plasma catecholamines is thought to provide a vital protective role for the neonatal animal during, and following birth. This is mediated in part by promoting lung fluid absorption, surfactant secretion, heart rate stabilization, and brown fat mobilization. The observation that, in the neonate, catecholamines are secreted in the absence of functional sympathetic innervation suggests that the chromaffin cells possess other mechanisms for directly 'sensing' a fall in blood O2 tension (hypoxia). The primary goal of this thesis was to uncover the mechanisms of oxygen-sensing in developing chromaffin cells from the rat and mouse, using primary short-term cell cultures of chromaffin cells. The experimental approaches relied on patch clamp techniques to record ionic currents and membrane potential, carbon fibre electrochemistry to record catecholamine secretion from cell clusters, and fluorescent indicators to measure reactive oxygen species generation. Hypoxic chemosensitivity was found in embryonic and neonatal, but not juvenile chromaffin cells from both the rat and mouse. Exposure to hypoxia or anoxia caused a reversible suppression of whole-cell current, which was comprised of the differential modulation of three K+ currents: (1) suppression of a large-conductance Ca2+-dependent K+ current; (2) suppression of a delayed rectifier K+ current; and (3) activation of an ATP-sensitive K+ current. Hypoxia also induced membrane depolarization that was not initiated by any of these three voltage-dependent K+ currents. Additionally, hypoxia broadened action potentials in chromaffin cells that showed spontaneous activity, and this was mediated by a prolongation of the time course of membrane repolarization. All of these factors likely contribute to catecholamine secretion by enhancing the influx of Ca2+ through depolarization-activated L-type Ca2+ channels. Two sets of experiments were designed to identify the oxygen sensor in neonatal chromaffin cells. First, cells from transgenic mice, deficient in the gp91^phox component of the putative O2-sensor protein, NADPH oxidase, responded to hypoxia in the same way as wild type cell, indicating that NADPH oxidase is not primarily responsible for oxygen sensitivity in these cells. Second, inhibitors of the proximal electron transport chain (e.g. rotenone and antimycin A) mimicked and attenuated the hypoxic response, while inhibitors of the distal electron transport chain (cyanide) and uncouplers of oxidative phosphorylation (2,4-dinitrophenol) had no effect. Furthermore, reactive oxygen species production, primarily H2O2, decreased during exposure to hypoxia or inhibitors of the proximal electron transport chain, revealing a potential mitochondrial mechanism for 'sensing' of the hypoxic stimulus. Reduced oxygen availability to the electron transport chain is proposed to cause a fall in cellular reactive oxygen species (ROS), principally H2O2. This fall in ROS signals closure of Ca2+-dependent and Ca2+-independent K+ channels, which causes broadening action potentials and increases Ca2+ influx. The latter is further enhanced by the hypoxia-induced membrane depolarization, which in turn increases the probability of cell firing. The rise in intracellular Ca2+ then acts as the signal for catecholamine release from the chromaffin cells. / Thesis / Doctor of Philosophy (PhD)

Dissolved oxygen concentrations are declining in the bottom waters of many lakes around the world, posing critical water quality concerns. Throughout my dissertation, I assessed how bottom-water dissolved oxygen may mediate the effects of climate and land use change on water quality in lakes. First, I characterized causes of variation in summer bottom-water temperature and dissolved oxygen. I demonstrated that spring air temperatures may play a greater role than summer air temperatures in shaping summer bottom-water dynamics. I then characterized the effects of declining bottom-water oxygen concentrations across diverse scales of analysis (i.e., using microcosm incubations, whole-ecosystem oxygenation experiments, and data analysis of >600 widespread lakes). I found that low dissolved oxygen concentrations contributed to release of nutrients and organic carbon from lake sediments, potentially altering the role of lakes in global biogeochemical cycles. Importantly, I also found support for a previously-hypothesized Anoxia Begets Anoxia feedback, whereby bottom-water anoxia (i.e., no dissolved oxygen) in a given year promotes increasingly severe occurrences of anoxia in following summers. This finding demonstrates the need for forecasts of future oxygen dynamics in lakes, as management actions to preempt the first occurrence of anoxia will be more effective than actions to restore ecological function after oxygen concentrations have already declined. To build the capacity for such forecasts, I led a systematic review of ecological forecasting literature that characterized the state of the field, emerging best practices, and relative predictability of four ecological variables. Combined, my dissertation provides a mechanistic examination of the effects of climate change on water quality in lakes worldwide, ultimately helping to anticipate, mitigate, and preempt future water quality declines. / Doctor of Philosophy / Changes in climate and land use have caused dissolved oxygen concentrations to decline in many lakes around the world. These declines are concerning because low oxygen concentrations can cause substantial water quality problems. If we could better predict future water quality, we may be able to develop more effective lake management programs. To help meet this need, I analyzed how dissolved oxygen has mediated historical changes in water quality, and how dissolved oxygen may affect water quality in the future. I focused on bottom-water (rather than surface-water) dissolved oxygen, because bottom waters are more likely to experience very low oxygen concentrations that can lead to water quality problems. I started by assessing the drivers of summer bottom-water dissolved oxygen in 615 lakes. Across these lakes, spring air temperatures played a greater role than summer air temperatures in shaping summer bottom-water temperature and dissolved oxygen. I then characterized the effects of declining bottom-water oxygen concentrations using small-scale incubations in the lab, manipulations of oxygen concentrations in a whole reservoir, and data analysis across 656 lakes. I found that low dissolved oxygen conditions led to the release of nutrients and organic carbon from lake sediments, which may worsen water quality. Importantly, I also found support for a feedback effect, whereby low bottom-water dissolved oxygen in one summer perpetuates oxygen declines in following summers. This finding motivates the need for forecasts of future dissolved oxygen concentrations, as management actions to stop the first occurrence of low oxygen concentrations will be more effective than actions to restore water quality after oxygen concentrations have already started to decline. To build capacity for lake oxygen forecasts, I synthesized many published papers that have predicted future ecological states, and I documented proposed best practices in this emerging field. Ultimately, by advancing our understanding of how climate and land use change affect water quality in lakes worldwide, my dissertation research will help to anticipate, mitigate, and preempt future water quality declines.

L’industrialisation de l’étang de Berre au cours du 20ème siècle s’est accompagnée d’importants rejets en éléments traces métalliques (ETM) qui ont été en partie accumulés dans les sédiments et sont aujourd’hui susceptibles d’être remobilisés vers la colonne d’eau ou d’être intégrés dans le réseau trophique et d’entrainer un risque écotoxicologique.La reconstitution de l’évolution temporelle et spatiale de la contamination des sédiments montre que les niveaux de contaminations actuels des sédiments de surface sont les plus bas depuis plusieurs décennies en lien avec l’efficacité des réglementations sur les rejets industriels mises en place dans les années 1970. Ces niveaux sont faibles à modérés en surface mais de très fortes contaminations existent quelques centimètres sous la surface des sédiments.Le rôle des oxy-hydroxydes de Fe ou de Mn et des sulfures dans le contrôle de la mobilité des ETM dans le sédiment et leurs flux à l’interface eau/sédiment a pu être démontré grâce à la modélisation du transport et des réactions des composés chimiques et des ETM dans les eaux interstitielles, de leurs profils de concentrations dans la fraction réactive de la phase particulaire et d’expérimentations en conditions contrôlées au laboratoire. L’oxygénation de la colonne d’eau constitue le principal paramètre influençant cette mobilité et ces flux, et l’influence d’une réoxygénation des fonds dans le Grand Etang est discutée.Enfin, la biodisponibilité des ETM et le stress (géno)toxicologique qu’ils peuvent constituer pour un organisme benthique cible, le polychète Nereis succinea, ont été évalués par l’estimation des fractions potentiellement biodisponibles dans les sédiments (extractions chimiques et Diffusive Gradient in Thin-films), par la mesure des concentrations bioaccumulées et par l’utilisation de biomarqueurs de défense (métallothionéines) et de dommages (tests de génotoxicité). Certains ETM qui sont fortement bioaccumulés représentent un risque potentiel et pourraient être impliqués dans la dégradation de la macrofaune benthique. / The industrialization of the Berre lagoon in the 20th century was accompanied by large releases trace metals, which were partially accumulated in sediments and are now likely to be remobilized to the water column or be integrated into the food chain and cause an ecotoxicological risk.The reconstruction of the temporal and spatial trends of sediment contamination shows that current levels of contamination of surface sediments have been the lowest for decades in agreement with the effectiveness of regulations on industrial releases set up in the years 1970. These levels are low to moderate in surface but very high contamination exist a few centimeters below the sediment surface.The role of Fe and Mn oxy-hydroxides and sulfides in controlling the mobility of ETM in the sediment and fluxes at the water/sediment interface has been demonstrated through the modeling of transport and reactions of chemical compounds and trace metals in the pore waters, their concentration profiles in the reactive fraction of the particulate phase and experiments under controlled laboratory conditions. The oxygenation of the water column is the main parameter influencing the mobility and fluxes and the influence of reoxygenation of bottom water column in the Grand Etang is discussed.Finally, the bioavailability of trace metals and adverse effects they may constitute for a target benthic organism, the polychaete Nereis succinea, were evaluated by estimating the potentially bioavailable fraction in sediments (chemical extractions and Diffusive Gradient in Thin-films), by measuring bioaccumulated concentrations and by the use of biomarkers (metallothioneins and genotoxicity assays). Some highly bioaccumulated trace metals pose a potential risk and might be involved in the degradation of the benthic macrofauna.

A intolerância ao exercício físico na insuficiência cardíaca (IC) está relacionada a alterações hemodinâmicas e neurohumorais pela complexa interação dos reflexos cardiovasculares. Os quimiorreflexos central e periférico e o ergorreflexo estão envolvidos na hiperventilação de repouso e durante o exercício, contribuindo para intolerância ao esforço. Os objetivos do estudo foram avaliar o efeito da terapêutica com beta-bloqueador (betab) na resposta dos quimiorreflexos central e periférico e do ergorreflexo por meio das alterações da resposta ventilatória durante o teste de caminhada de seis minutos (T6M); e avaliar o efeito da sua otimização também sobre as catecolaminas plasmáticas e peptídeo natriurético do tipo B (BNP). Foram estudados 15 pacientes masculinos, 49.5 ± 2.5 anos, com diagnóstico de IC há mais de 3 meses, sem histórico de tratamento com betab, com fração de ejeção (FEVE) 25.9 ± 2.5%, classe funcional I-III (NYHA). Estes pacientes poderiam estar em uso de inibidores da enzima conversora da angiotensina, bloqueadores do receptor da angiotensina II e antagonista do receptor da aldosterona. Todos os indivíduos realizaram testes: ergoespirométrico em esteira segundo o protocolo de Naughton, três T6M em esteira com controle de velocidade pelo paciente randomizados (um com sensibilização dos quimiorreceptores centrais, um com sensibilização dos quimiorreceptores periféricos e um controle em ar ambiente - AA). Também realizaram T6M com e sem oclusão circulatória regional em membro inferior. Em relação aos exames laboratoriais, foram feitas análises de catecolaminas plasmáticas em repouso e BNP. Os pacientes foram então submetidos a tratamento medicamentoso padrão da Instituição, com introdução e otimização da terapêutica com ßb e, após seis meses, foram reavaliados. Após otimização do betab, houve melhora significativa na FEVE, de 26 ± 2,5 para 33 ± 2,6 (p < 0,05); diminuição de níveis de BNP (775 ± 163 para 257 ± 75; p < 0,01) e de catecolaminas plasmáticas (598 ± 104 para 343 ± 40; p < 0,05). Foi também observada diminuição significativa na frequência cardíaca de repouso, de 95.6 ± 4.5 para 69.0 ± 1.6 (p < 0,01), e aumento do pulso de O2 de repouso (3.7 ± 0.3 para 4.4 ± 0.3; p < 0,01) pós betab. Em relação ao pico do esforço, houve diminuição significativa da frequência cardíaca, de pico 144.0 ± 4.6 para 129.5 ± 4.2 (p < 0,05), aumento do pulso de O2 (11.9 ± 1.1 para 15.5 ± 0.8; p < 0,01), diminuição do VE/VCO2 slope 29.4(25.8-36.2) para 24.6 (22.5-27.5); p=0,03) e aumento do tempo de exercício (12.3 ± 1.3 para 16.1 ± 1.2; p=0,01), sem, entretanto, aumento do consumo de oxigênio. Houve diferença significativa em relação à distância percorrida no T6M entre os dois momentos (pré e pós) em todas as análises, tanto controle (AA) quanto para a sensibilização dos quimiorreceptores centrais e periféricos, além de diminuição da resposta ventilatória nas sensibilizações dos quimiorreflexos quando comparados com o controle. A otimização da terapêutica medicamentosa na IC, especialmente com betab, promove melhora hemodinâmica, metabólica e neurohormonal. O presente estudo, que examinou os efeitos da terapêutica com betab na resposta dos quimiorreflexos e ergorreflexo em pacientes com IC, documentou que o betab diminui a resposta dos quimiorreflexos durante o exercício em hipóxia e hipercapnia sem, entretanto, alterar a resposta dos ergorreflexos. Essa modulação reflexa pode ser responsável pelo aumento da tolerância ao esforço sem o aumento do consumo de oxigênio / In heart failure (HF), exercise intolerance is related to hemodynamic and neurohumoral alterations by the complex interaction of cardiovascular reflexes. The central and peripheral chemoreflex and the ergoreflex are involved in hyperventilation at rest and during exercise, contributing to exercise intolerance. The aims of the study were to assess the effect of beta-blocker (betab) therapy on the central and peripheral chemoreflexes and ergoreflex responses through ventilatory changes during the six-minute walk test (6MWT), and to assess the effect of betab optimized therapy on plasma catecholamines and B-type natriuretic peptide (BNP). We studied 15 male patients, 49.5 ± 2.5 years, diagnosed with HF for more than three months, never-treated with ßb, ejection fraction (LVEF) 25.9 ± 2.5%, functional class I-III (NYHA). These patients could be in use of angiotensin-converting enzyme inhibitors, angiotensin receptor blockers and aldosterone antagonists. All subjects underwent the following tests: cardiopulmonary exercise treadmill test according to the Naughton protocol, three randomized treadmill 6MWT with speed controlled by the patient (one with sensitization of central chemoreceptors, one with an awareness of peripheral chemoreceptors and another control in ambiental air - AA). Also all subjects underwent 6MWT with and without regional circulatory occlusion on the lower limb. Regarding laboratory tests, plasma catecholamines concentration at rest and BNP were also analyzed. Patients were then submitted to the institution standard drug therapy, with introduction and optimization of betab and were reassessed six months later. After optimization, there was a significant improvement in LVEF from 26 ± 2.5 to 33 ± 2.6 (p < 0.05); and a decrease in BNP levels (775 ± 163 to 257 ± 75, p < 0.01) and plasma catecholamines (598 ± 104 to 343 ± 40, p < 0.05). There was also a significant decrease in resting heart rate from 95.6 ± 4.5 to 69.0 ± 1.6 (p < 0.01) but O2 pulse at rest increased post optimization (3.7 ± 0.3 to 4.4 ± 0.3, p < 0.01). Regarding the peak exercise, there was a significant decrease in peak heart rate 144.0 ± 4.6 to 129.5 ± 4.2 (p < 0,05) and VE/VCO2 slope 29.4(25.8-36.2) to 24.6(22.5-27.5), p=0.03); and an increase in O2 pulse (11.9 ± 1.1 to 15.5 ± 0.8, p < 0.01), and exercise time (12.3 ± 1.3 to 16.1 ± 1.2, p=0.01), without, however, increasing oxygen consumption. There was significant difference in walked distance during the 6MWT between the two time points (before and after) in all analyzes, both control (AA) and for the sensitization of central and peripheral chemoreceptors. Also, there was a decreased ventilatory response in sensitization of chemoreflexes when compared with the control. The optimization of drug therapy in HF, especially with ßb, promotes hemodynamic, metabolic and neurohormonal improvements. This study, which examined the effect of therapy with betab on the response of the chemoreflexes and ergoreflex in HF patients, documented that ßb decreases the response of chemoreflexes during exercise in hypoxia and hypercapnia without, however, altering the ergoreflex response. This reflex modulation may be responsible for the increased exercise tolerance without increasing oxygen consumption

Submitted by Fabíola Silva (fabiola.silva@famerp.br) on 2016-09-29T20:17:35Z No. of bitstreams: 1 josehenriquemferreira_dissert.pdf: 1670640 bytes, checksum: 3707d57cc4f4e98d8edb6594786c1b7e (MD5) / Made available in DSpace on 2016-09-29T20:17:35Z (GMT). No. of bitstreams: 1 josehenriquemferreira_dissert.pdf: 1670640 bytes, checksum: 3707d57cc4f4e98d8edb6594786c1b7e (MD5) Previous issue date: 2014-10-20 / Introduction: Mammary neoplasms are the most common type of tumor in dogs. Some proteins play an important role in tumor progression, thus are candidate prognosis markers. During tumor growth, the transcription factor induced by hypoxia (HIF-1α) activates the expression of vascular endothelial growth factor (VEGF), promoting angiogenesis. Interleukin-8 (IL-8) is a pro-inflammatory and pro-angiogenic cytokine and has been associated with tumor progression. Objectives: To evaluate the prognostic value of HIF-1α, VEGF and IL-8 proteins in tumor tissue in dogs with mammary tumors, correlating them with clinicopathological parameters, clinical outcome and survival. Material and Methods: The concentrations of HIF-1α, VEGF and IL-8 proteins were evaluated by ELISA (Enzyme-linked immunosorbent) in macerated tumor of 25 bitches with mammary tumors and control samples and compared statistically. Results: The levels of HIF-1α, VEGF and IL-8 were higher in dogs over the age of 10 years and that had died (p <0.05). Moreover, HIF-1α concentrations were elevated in the tumors of dogs who developed metastases (p = 0.04), while VEGF levels were highest in tumors with clinical stages III and IV (p = 0.03) and IL-8 tumors in tumor with development greater than six months (p = 0.03). Still, high levels of HIF-1α, VEGF and IL-8 were also related to shorter overall survival (p <0.05). Conclusions: High levels of HIF-1α, VEGF and IL-8 are associated with features of poor prognosis, suggesting that the assessment of these proteins in tumor macerated has important prognostic value. / Introdução: As neoplasias mamárias são o tipo mais comum de tumor na espécie canina. Algumas proteínas exercem importante papel na progressão tumoral e portanto, são candidatos marcadores de prognóstico. Durante o crescimento tumoral, o fator de transcrição induzido por hipóxia (HIF-1α) ativa a expressão do fator de crescimento endotelial vascular (VEGF), promovendo a angiogênese. A interleucina-8 (IL-8) é uma citocina pró-inflamatória e pró-angiogênica e tem sido associada à progressão tumoral. Objetivos: Avaliar o valor prognóstico das proteínas HIF-1α, VEGF e IL-8 no tecido tumoral em cadelas com neoplasia mamária, relacionando-os com os parâmetros clínico-patológicos, evolução clínica e sobrevida. Material e Métodos: As concentrações das proteínas HIF-1α, VEGF e IL-8 foram avaliadas pelo método de ELISA (Enzyme-linked immunosorbent Assay) no macerado tumoral de 25 cadelas com neoplasia mamária e amostras controle e comparadas estatisticamente. Resultados: Os níveis de HIF-1α, VEGF e IL-8 foram maiores em cadelas com idade superior a 10 anos e que vieram a óbito (p < 0,05). Além disso, concentrações de HIF-1α foram elevadas nos tumores de cadelas que desenvolveram metástase (p = 0,04), enquanto os níveis de VEGF foram maiores em tumores com estadiamento clínico III e IV (p = 0,03), e de IL-8 em tumores com evolução tumoral maior que seis meses (p = 0,03). Ainda, níveis elevados de HIF-1α, VEGF e IL-8 também foram relacionados com menor tempo de sobrevida global (p < 0,05). Conclusões: Altas concentrações de HIF-1α, VEGF e IL-8 estão associadas com características de pior prognóstico, sugerindo que a avaliação dessas proteínas no macerado tumoral possui importante valor prognóstico.

This thesis examines sulfide oxidation in 4 physically and mineralogically diverse acid sulfate soil (ASS) materials collected from coastal floodplain sites in north-eastern New South Wales. The aim of this study is to gain further understanding of the process of sulfide oxidation in ASS materials, which will allow improved and more effective management strategies to be applied to these materials. The process of sulfide oxidation was examined using laboratory incubation experiments. The oxidation of pyrite was the primary cause of initial acidification of the ASS materials studied. Although the acid volatile sulfur fraction increased in concentration by an order of magnitude over the initial 8 days of incubation, the subsequent oxidation of this fraction did not result in substantial acidification. Sulfate (SO42-) was the dominant sulfur species produced from sulfide oxidation, however, water-soluble SO42- was a poor indicator of the extent of sulfide oxidation. The sulfoxyanion intermediates thiosulfate (S2O32-) and tetrathionate(S4O62-) were only detected in the early stages of incubation, and their relative abundance appeared to be pH dependent. The diminishing presence of these 2 sulfur species as oxidation progressed was indicative that ferric iron (Fe3+) and bacterial catalysis were driving the oxidation processes. The rate of sulfide oxidation, and consequent rate of acidification, was highly dependent on the soil pH and oxygen availability. Accelerated sulfide oxidation was only observed at low pH (i.e. pH < 4.0) when oxygen availability was not limited. The application of sub-optimal amounts of neutralising agents prevented severe soil acidification in the short-term (i.e. up to 2 months), but had little effect on decreasing the rate of sulfide oxidation and acidification in the long-term. Sub-optimal amounts of CaCO3 accelerated sulfide oxidation and acidification of the peaty marcasitic ASS material resulting in elevated soluble Fe and Al concentrations. For some of the ASS materials, sub-optimal applications of seawater-neutralised bauxite refinery residue (SNBRR) also resulted in elevated soluble Al concentrations. The response of partially-oxidised ASS materials to the exclusion of oxygen was variable. The rate of sulfide oxidation, acidification and the production of soluble oxidation products generally decreased markedly when subjected to anoxia. However, especially in highly acidic ASS materials (i.e. pH < 3.5), sulfide oxidation and acidification generally occurred (albeit at much slower rates), most probably due to oxidation by Fe3+. Rapid sulfide re-formation occurred in the peat ASS material that had been oxidised for 63 days, with 0.47% reduced inorganic sulfur (SCR) formed over 60 days of anoxia. Biogeochemical sulfide formation consumes acidity, however, sulfide re-formation was ineffective in reversing acidification under the conditions of this experiment. The peroxide oxidation methods examined were method dependent and substantially underestimated peroxide oxidisable sulfur, sulfidic acidity and net acidity. The precipitation of jarosite during peroxide oxidation was a major factor contributing to the underestimation in these ASS materials. Clay mineral dissolution may contribute towards the underestimation of both sulfidic and net acidity using peroxide oxidation methods. The atmospheric loss of sulfur and acidity was also identified as a possible additional interference. This study has shown that the initial pH of an ASS material is a useful indicator (additional to those already used) of the potential environmental hazard of an ASS material when oxygen is expected to be non-limiting, such as when ASS materials are excavated and stockpiled. The recommended action criteria need to be reassessed as the data indicate that the current criteria are conservative for alkaline and neutral ASS materials, but should be lowered for all acidic ASS materials (i.e. pH < 5.5) to 0.03% sulfide regardless of texture. Alternative strategies are necessary for the management of ASS materials that are subject to oxidation when the addition of optimal rates of neutralising materials cannot be ensured. The treatment of sites containing actual ASS materials by management strategies that rely on oxygen exclusion need to be accompanied by strategies that include either acid neutralisation or containment in order to reduce acid export from the site. The peroxide oxidation methods examined were subject to substantial interferences, and consequently are unable to reliably provide accurate measurements of the reduced inorganic sulfur fraction, sulfidic acidity, and net acidity in ASS materials.

Extended periods of oxygen deprivation cause brain death in mammals but the western painted turtle overwinters in anoxic mud for months without damage. Neural protection is achieved through decreases in the whole cell currents of N-methyl-D-aspartate and alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid receptors (NMDAR and AMPAR) that are dependent on a mild increase in intracellular calcium from the mitochondria. The goal of this research was to determine if natural anoxic decreases in reactive oxidative species (ROS) serve as the signal to bring about these changes. Reductions in cellular ROS levels were demonstrated to have no effect on AMPAR currents or intracellular calcium and produced massive increases in NMDAR currents, indicating that ROS depression does not directly mediate anoxic alterations. Interestingly, mammalian neural tissue also experiences a similar increase in NMDAR whole cell current in response to reducing agents suggesting a possible conserved mechanism for normoxic receptor control.

Extended periods of oxygen deprivation cause brain death in mammals but the western painted turtle overwinters in anoxic mud for months without damage. Neural protection is achieved through decreases in the whole cell currents of N-methyl-D-aspartate and alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid receptors (NMDAR and AMPAR) that are dependent on a mild increase in intracellular calcium from the mitochondria. The goal of this research was to determine if natural anoxic decreases in reactive oxidative species (ROS) serve as the signal to bring about these changes. Reductions in cellular ROS levels were demonstrated to have no effect on AMPAR currents or intracellular calcium and produced massive increases in NMDAR currents, indicating that ROS depression does not directly mediate anoxic alterations. Interestingly, mammalian neural tissue also experiences a similar increase in NMDAR whole cell current in response to reducing agents suggesting a possible conserved mechanism for normoxic receptor control.

This thesis examines sulfide oxidation in 4 physically and mineralogically diverse acid sulfate soil (ASS) materials collected from coastal floodplain sites in north-eastern New South Wales. The aim of this study is to gain further understanding of the process of sulfide oxidation in ASS materials, which will allow improved and more effective management strategies to be applied to these materials. The process of sulfide oxidation was examined using laboratory incubation experiments. The oxidation of pyrite was the primary cause of initial acidification of the ASS materials studied. Although the acid volatile sulfur fraction increased in concentration by an order of magnitude over the initial 8 days of incubation, the subsequent oxidation of this fraction did not result in substantial acidification. Sulfate (SO42-) was the dominant sulfur species produced from sulfide oxidation, however, water-soluble SO42- was a poor indicator of the extent of sulfide oxidation. The sulfoxyanion intermediates thiosulfate (S2O32-) and tetrathionate(S4O62-) were only detected in the early stages of incubation, and their relative abundance appeared to be pH dependent. The diminishing presence of these 2 sulfur species as oxidation progressed was indicative that ferric iron (Fe3+) and bacterial catalysis were driving the oxidation processes. The rate of sulfide oxidation, and consequent rate of acidification, was highly dependent on the soil pH and oxygen availability. Accelerated sulfide oxidation was only observed at low pH (i.e. pH < 4.0) when oxygen availability was not limited. The application of sub-optimal amounts of neutralising agents prevented severe soil acidification in the short-term (i.e. up to 2 months), but had little effect on decreasing the rate of sulfide oxidation and acidification in the long-term. Sub-optimal amounts of CaCO3 accelerated sulfide oxidation and acidification of the peaty marcasitic ASS material resulting in elevated soluble Fe and Al concentrations. For some of the ASS materials, sub-optimal applications of seawater-neutralised bauxite refinery residue (SNBRR) also resulted in elevated soluble Al concentrations. The response of partially-oxidised ASS materials to the exclusion of oxygen was variable. The rate of sulfide oxidation, acidification and the production of soluble oxidation products generally decreased markedly when subjected to anoxia. However, especially in highly acidic ASS materials (i.e. pH < 3.5), sulfide oxidation and acidification generally occurred (albeit at much slower rates), most probably due to oxidation by Fe3+. Rapid sulfide re-formation occurred in the peat ASS material that had been oxidised for 63 days, with 0.47% reduced inorganic sulfur (SCR) formed over 60 days of anoxia. Biogeochemical sulfide formation consumes acidity, however, sulfide re-formation was ineffective in reversing acidification under the conditions of this experiment. The peroxide oxidation methods examined were method dependent and substantially underestimated peroxide oxidisable sulfur, sulfidic acidity and net acidity. The precipitation of jarosite during peroxide oxidation was a major factor contributing to the underestimation in these ASS materials. Clay mineral dissolution may contribute towards the underestimation of both sulfidic and net acidity using peroxide oxidation methods. The atmospheric loss of sulfur and acidity was also identified as a possible additional interference. This study has shown that the initial pH of an ASS material is a useful indicator (additional to those already used) of the potential environmental hazard of an ASS material when oxygen is expected to be non-limiting, such as when ASS materials are excavated and stockpiled. The recommended action criteria need to be reassessed as the data indicate that the current criteria are conservative for alkaline and neutral ASS materials, but should be lowered for all acidic ASS materials (i.e. pH < 5.5) to 0.03% sulfide regardless of texture. Alternative strategies are necessary for the management of ASS materials that are subject to oxidation when the addition of optimal rates of neutralising materials cannot be ensured. The treatment of sites containing actual ASS materials by management strategies that rely on oxygen exclusion need to be accompanied by strategies that include either acid neutralisation or containment in order to reduce acid export from the site. The peroxide oxidation methods examined were subject to substantial interferences, and consequently are unable to reliably provide accurate measurements of the reduced inorganic sulfur fraction, sulfidic acidity, and net acidity in ASS materials.

Dopamine (DA) neurons of the substantia nigra pars compacta (SNc) have a key role in regulation of voluntary movement control. Their death is a hallmark of Parkinson’s disease, characterised by inhibited motor control, including muscle rigidity and tremor. Excitatory input to SNc-DA neurons is primarily from the subthalamic nucleus, and in PD these afferents display a higher frequency firing, as well as increased burst firing, which could cause increased excitatory activity in SNc-DA neurons. NMDA receptors (NMDARs) bind the excitatory neurotransmitter glutamate, and are essential for learning and memory. In SNc-DA neurons, NMDARs have a putative triheteromeric subunit arrangement of GluN1 plus GluN2B and/or GluN2D. Wild type (WT) mice, and those lacking the gene for GluN2D (Grin2D-null), were used to explore its role in various aspects of DA neuronal function and dysfunction using patch-clamp electrophysiology, viability assaying, and immunofluorescence. Pharmacological intervention using subunit-specific inhibitors ifenprodil and DQP-1105 on elicited NMDAR-EPSCs suggested a developmental shift from primarily GluN2B to GluN2B/D. Activity dependent regulation was assessed by high frequency burst stimulation of glutamatergic afferents: in comparison to controls, significant downregulation of NMDARs was observed in SNc-DA neurons, though no differences were observed based on genotype. This regulatory function may be a neuroprotective or homeostatic response. Ambient extracellular glutamate elicits tonic NMDAR activity in SNc-DA neurons, which may be important for maintaining basal levels of excitability: the role of GluN2D was assessed by recording the deflection in baseline current caused by application of competitive NMDAR antagonist D-AP5. There was a significantly larger NMDAR-mediated current in WT vs Grin2D-null mice, indicating that GluN2D has a role in binding ambient glutamate. Dysfunction of glutamate uptake could be a secondary pathophysiological occurrence in the SNc, leading to increased ambient glutamate: the effect of this was explored by application of the competitive glutamate transporter blocker TBOA. Here, the NMDAR-mediated portion of this current was significantly higher in WT mice in comparison to Grin2D-null. Interestingly, dose-response data obtained from bath application of NMDA showed significantly larger currents in Grin2D-null animals vs WT, but only at the top of the response curve (~1-10 mM), which may indicate a capability for larger conductance in Grin2D-null animals at high NMDAR saturation due to replacement of GluN2D with GluN2B. GluN2D may therefore be neuroprotective, by attenuating peak current flow in response to very high agonist concentrations. Lastly, GluN2D has been found to decrease NMDAR open probability under hypoxic conditions, potentially conferring resistance to hypoxia / ischemia related excitotoxicity. Therefore, low (15% O2 / 80% N2 / 5% CO2) vs high (95% O2 / 5% CO2) oxygen conditions were used along with immunofluorescent propidium iodide cell death assaying and immunofluorescent labeling for DA neurons in order to compare levels of DA neuronal death in the SNc based on oxygen status and genotype. Whilst there was a significant submaximal effect based on O2 status, genotype did not confer a practical resistance under these conditions. In summary, NMDARs have diverse roles in SNc-DA neurons which may both serve to maintain normal function and protect the cell against potentially pathological conditions.