I ett samhälle där upphovsrätten och immaterialrätten blir allt mer uppmärksammad är det viktigt för företag att vara medvetna om sitt innehav av licenser för mjukvaror. I detta arbete kommer företags medvetenhet om deras licenshanteringssituation att undersökas. I den här rapporten kommer problemställningen att undersökas med hjälp av intervjuer med företag. Dessa intervjuer kommer att ske via telefon och per e-post. Ett liknande arbete har tidigare inte gjorts och därför känns det relevant samt intressant att göra denna undersökning. Arbetet resulterade i intervjusvar från 11 företag. Det visade sig att företagens medvetenhet om deras licenshantering varierade stort, vilket även att storleken på företagen och innehav av en policy för licenshantering bland företagen gjorde. Metoden för licenshantering och licensinventering skiljde sig åt bland företagen. Ett flertal program, tillammans med pärmar och Excel-listor var de dominerande licenshanteringsmetoderna bland företagen. Mjukvarutillverkarna och deras intresseorganisationer däribland BSA ställer krav på att företag som använder deras licensierade programvaror skall ha en strukturerad licenshantering. De ser gärna att företagen följer någon vedertagen metod för detta, en sådan metod är Software Asset Management, SAM. Det är svårt att rekommendera någon licenshanteringsmetod och program som fungerar för samtliga företag, då användandet av dessa är väldigt företags- och organisationsspecifikt. De flesta större mjukvaror som finns i dagsläget följer en vedertagen metod för licenshantering och fungerar därmed bra att tillförlitligt inventera licenser med. / In a community where copyright and intellectual property law is getting more attention in the media, it is important for companies to be aware of their possession of software licenses. In this thesis we are going to investigate the awareness of the software licensing situation in some companies. To collect data that can be analyzed, we are interviewing companies. The interviews are performed by phone or e-mail. A similar report hasn’t been done before therefore it’s an interesting subject to look at. The interviews resulted in answers from 11 companies. The answers showed that the awareness about software licensing among the companies had big variations. Some other things that varied among the companies were the size of the companies and the usage of software licensing policy within the companies. The way and method of handling software licensing also varied among the companies. A lot of software programs, along with folders and Excel-lists dominated the method of handling software licenses among the companies. Software developing companies together with their interest organization for example BSA has demands on companies using their software to have a foreseeable documentation for the software licenses. They gladly see that the companies uses a best practice method to manage their license possessions, one best practice method is Software Asset Management, SAM. It is hard to recommend a method for software license management to a non-specific company, because every company has a unique organization and computer network structure. Most of the big license management software is following a best practice method for software license management.

Les anticorps monoclonaux (mAb) sont d’importants agents thérapeutiques largement utilisés dans le traitement de cancers. Ces protéines recombinantes complexes sont généralement produites dans des lignées cellulaires de mammifères et l’industrie pharmaceutique a développé des procédés robustes permettant d’obtenir de grandes quantités d’anticorps monoclonaux de qualité constante. Une tendance générale observée aujourd’hui est d’éviter l’utilisation de produits d’origine animale dans ces procédés. En effet, ces composés représentent un risque de contamination du médicament par des agents infectieux et les autorités règlementaires renforcent leurs exigences pour leur retrait des procédés de fabrication. Ces composés sont par ailleurs mal définis et posent des problèmes de variabilité des procédés de production. L’objectif de ce projet était de développer un milieu sans dérivés animaux pour la culture d’une lignée cellulaire Sp2/0 utilisée par la société Merck Serono pour exprimer un anticorps monoclonal thérapeutique. Le procédé de fabrication actuel contient de la sérum albumine bovine (BSA) et de l’EX-CYTE (concentré commercial de lipoprotéines et acides gras) extraits de sérum bovin. Le retrait des deux composés du milieu de culture a entrainé une diminution de la productivité du procédé de 87% et il a été observé que l’EX-CYTE et la BSA étaient essentiels pour la survie de notre lignée cellulaire Sp2/0. La BSA a permis à elle seule de remplacer l’EX-CYTE dans le procédé et a été utilisée comme modèle pour le développement d’un remplacement sans dérivés animaux. Une étude de caractérisation de la préparation de BSA a été effectuée afin d’identifier les facteurs responsables de son activité promotrice pour la croissance cellulaire. Les lipides représentaient une partie importante de cette activité mais un rôle significatif d’autres protéines contaminantes a été révélé. Enfin, un supplément lipidique sans dérivés animaux a été développé. Ce supplément était constitué d’un mélange de quatre acides gras (les acides oléique, linoléique, palmitique et stéarique) couplés à de la sérum albumine humaine recombinante (rHSA). Le supplément acides gras-rHSA a permis de remplacer l’EX-CYTE et la BSA et un milieu sans composés d’origine animale a finalement été obtenu. / Monoclonal antibodies (mAbs) are important therapeutics widely used for cancer therapy. Mammalian cell lines are usually employed to produce these complex recombinant proteins and the pharmaceutical industry has developed robust processes that deliver large quantities of mAbs with a sustained quality. A general trend observed today is to avoid the use of animal-derived components in such processes. Indeed, these compounds represent a potential risk of contamination of the final drug product with infectious agents and regulatory authorities are putting pressure for their removal from manufacturing processes. Such compounds are also ill defined and source of variability for the production processes. The goal of this project was to develop an animal-derived component free (ADCF) medium for the culture of an Sp2/0 cell line used by the company Merck Serono to express a therapeutic mAb. The manufacturing process currently used contains bovine serum albumin (BSA) and EX-CYTE (a commercial concentrate of lipoproteins and fatty acids) sourced from bovine serum. The removal of both components from the cell culture medium decreased the productivity of the process by 87%. EX-CYTE and BSA were found to be essential for the survival of our Sp2/0 cell line. BSA, which was found to replace EX-CYTE in the process, was used as a model for the development of an animal-derived component free replacement. A characterization of the BSA preparation was carried out to identify the factors responsible for its growth-promoting activity. Lipids accounted for a major part of the activity of the BSA preparation but a significant role of other protein contaminants was revealed. Finally, an animal-derived component free lipid supplement was developed. This supplement consisted in a mixture of four fatty acids (FA) (oleic, linoleic, palmitic and stearic acids) complexed with recombinant human serum albumin (rHSA). The FA/rHSA supplement could substitute for EX-CYTE and BSA and an ADCF medium was finally obtained.

Estudos anteriores mostram que o polímero Nafion® pode causar deslocamento do equilíbrio conformacional de proteínas em valores de pH que não o fisiológico. Nesse sentido, o Nafion® não só pode ser utilizado como uma sonda interessante para estudos estruturais de proteínas, mas, também, é importante entender seu papel na conformação da proteína. Portanto, a Albunina do Soro Bovino (BSA) foi escolhida como modelo para o estudo dos efeitos do Nafion® na conformação helicoidal de proteínas. A finalidade deste trabalho é entender as alterações na conformação e vizinhanças aromáticas da BSA, na faixa de pH de 2 a 12, na presença e ausência de Nafion®, que pode também revelar o papel do polímero na exposição dos aromáticos e nos processos de transferência de energia. As alterações da estrutura secundária foram medidas por Dicroísmo Circular e os espectros de fluorescência no estado estacionário foram usados para analisar as mudanças nas vizinhanças dos aromáticos. Os resultados mostraram a diminuição discreta do conteúdo helicoidal da conformação da BSA na região extremamente básica, pH 11 em relação à conformação em pH 7. Já na região ácida, pH 2, embora haja considerável diminuição do conteúdo helicoidal, a BSA ainda mantém quase 50% de sua conformação secundária regular. Em relação aos ambientes dos aromáticos triptofano e tirosina, a eficiência quântica da emissão de fluorescência diminui em regiões ácidas e básicas, indicando que, nessas estruturas, os aromáticos encontram-se em restrição conformacional em relação ao observado na proteína nativa. Estes resultados apontam para a mudanças na conformação da BSA em ambas as regiões: ácidas e básicas, incluindo mudanças das estruturas secundárias e nas vizinhanças dos aromáticos. A adição do Nafion®, por outro lado, acentua o deslocamento para o azul e diminuição da exposição dos aminoácidos, tanto em solução quanto em estado sólido. A estrutura secundária da proteína é completamente modificada pelo polímero na região ácida, e esta conformação é mantida nas regiões neutra e básica, sugerindo que o Nafion® não estabiliza estruturas helicoidais / Previous studies have shown that Nafion® can disturb the conformational equilibrium of some proteins when at pH other than physiological ones. In this sense, Nafion® can used to study protein conformation, but is also important to understand its interaction with the proteins. In this work, Bovine Serum Albimun (BSA) was chosen as a model to understand the modifications caused by Nafion® at helicoidal proteins conformation. More specifically, the aim encloses the understanding of changes in BSA secondary conformation and aromatic vicinities, at pH range from 2 to 12, in the Nafion®s presence and absence. Secondary changes were measured by Circular Dichroism and steady-state fluorescence was used to study the aromatic vicinities. Results have shown small differences at helix content in the extremely basic pH (pH 11) when compared to BSA conformation at pH 7 (native one). At pH 2, on the other hand, although a decreasing in helical content was observed, BSA was able to keep almost 50% of secondary regular conformation. Regarding the aromatic vicinities (tryptophans and tyrosines) the fluorescence emission quantum eficience decreased in both regions (acid and basic), suggesting that the aromatics in these conformations are found in a more restrict environment. Nafion®, when added, promoted a decreasing in aromatic exposition, both in solution and solid state, while the secondary structure is completelu modified by its presence in all pH range, suggesting that helical conformations are not stabilized by Nafion®

Orientador: Everaldo Carlos Venâncio. / Dissertação (mestrado) - Universidade Federal do ABC. Programa de Pós Graduação em Nanociências e Materiais Avançados, 2010.

Proteins play a major role in living systems and present a wide spectrum of functionalities. Many different types of proteins are involved into biological processes, such as the catalysis of biochemical reactions, cellular membrane transport, immune system response and DNA replication. However, some proteins and peptides might become harmful to living organisms; for example, their abnormal aggregation causes neurodegenerative disorders including Alzheimer disease (AD). One of the causes of AD is the presence of amyloid beta peptides Aβ(1-42), Aβ(1-40), which self-assemble into insoluble fibrils and plaques, which surround neuronal cells impeding synapsis. The number of AD patients is increasing, but a cure has not been founded yet. Therefore, it is crucial to investigate the mechanisms underlying amyloid aggregation and screening for compounds able to prevent this irreversible process. Microfluidics permits characterising the physicochemical properties of proteins, investigate their aggregation and study their interactions with other molecules. Chemical kinetics allows studying the microscopic events occurring during protein self-assembly. The combination of these two techniques provides a powerful tool for the identification of compounds inhibiting the aggregation process. In this thesis by using microfluidics, chemical kinetics and other biophysical assays, I have investigated the proteins isoelectric point (pI) and the inhibition of aberrant Aβ(1-42) self-assembly process. Firstly, I describe the development of a microfluidic platform allowing for the measurement of the protein pI, in a gradient-free manner. This approach overcomes a fundamental limitation of convectional techniques that is the achievement of a stable and well-controlled pH gradient. Secondly, I investigate the inhibiting effect of llama nanobodies on Aβ(1-42) aggregation. The findings from this study show that nanobodies target monomeric species with high affinity whereas interactions with fibril surfaces are weak. Finally, I discuss the use of other compounds inhibiting specific nucleation stages. These include the chaperones clusterin and brichos, as well as soot and pure carbon nanoparticles. Importantly, the addition of both chaperones to Aβ(1-42) solutions has an additive inhibitory effect on aggregation. My findings will improve the characterization of the physicochemical properties of proteins as well as providing promising candidates for the inhibition of specific stages of amyloid beta aggregation opening the way to possible cures for AD disease.

The thermal denaturation of proteins has been extensively studied using several methods including differential scanning calorimetry (DSC). A custom-built optical system was used to study thermal effects on protein as an alternative method to DSC measurements. It was used to investigate the thermal stability of bovine serum albumin (BSA) with a focus on comparisons with published DSC data. In the first study, the effect of protein concentration on the thermal denaturation (Td) of BSA was determined and validated using published DSC data for bovine serum albumin (BSA). The optical rotation (OR) and transmitted light (TL) signals indicating protein conformational changes and gel formation, respectively, were collected during the heating of BSA solutions at ~6��C/min from room temperature to ~85��C. The experiments were performed on 1, 2.5 and 5% (w/v) BSA in 0.01 M phosphate buffer at pH 7 and ionic strength (IS) 0.08. BSA���s Td values obtained from this investigation were consistent with published values and had low experimental variability (CV<2.5%). In agreement with some but not all published data, increasing BSA concentration did not affect its thermal stability. Protein gel formation, however, increased with protein concentration. In the second study, changes in the OR and TL signal of BSA in 0.01 M phosphate buffer at pH 6.1, 7 and 7.9 with IS maintained at 0.04, 0.08 and 0.16 were recorded during the heating of BSA solutions at ~6��C/min from room temperature to ~85��C. BSA showed a maximum and minimum thermostability at pH 7 and 7.9, respectively, consistent with published values determined by DSC. BSA formed opaque gel at pH 6.1 approaching the BSA���s pI values. Increasing IS level did not have a significant effect on BSA���s Td value but promoted gel formation. In the third study, the optical method was applied to investigate the heat stability of BSA as affected by low concentrations of sucrose, trehalose or sorbitol. BSA solutions (2.5% w/v) in the presence of 0 5% sucrose, trehalose and sorbitol were heated at ~6��C/min from ambient temperature to ~85��C. In contrast with published work on the thermal stability of BSA in the presence of higher sugar concentrations, this study showed that increasing sugar concentration did not enhance the thermal stability of this protein. Also, the ability to promote protein stability among sucrose, trehalose and sorbitol were not significantly different. The significance of these studies is that they demonstrate that the custom-built optical methods here developed can be used to study heat-induced protein denaturation and the effect of environmental conditions. Future studies will examine other proteins such as ��-lactoglobulin or ��-lacactalbumin. A further advantage of optical systems is their ability to conduct real-time measurements which could be used for food processing control. / Graduation date: 2007

Submitted by Sandra Pereira (srpereira@ufrrj.br) on 2017-06-06T12:34:21Z No. of bitstreams: 1 2010 - Alessandra Medeiros Ribeiro .pdf: 4846590 bytes, checksum: 525d2754e1be01d1117fe6e9f3362d1f (MD5) / Made available in DSpace on 2017-06-06T12:34:21Z (GMT). No. of bitstreams: 1 2010 - Alessandra Medeiros Ribeiro .pdf: 4846590 bytes, checksum: 525d2754e1be01d1117fe6e9f3362d1f (MD5) Previous issue date: 2010-03-19 / Coordena??o de Aperfei?oamento de Pessoal de N?vel Superior, CAPES, Brasil. / Spectroscopic studies for several comercial flavonoids (flavone (FVA), alphanaphthoflavone (?-NAF), beta-naphthoflavone (?-NAF), thioflavone (TFA), S,Sdioxythioflavone (SDF), flavanone (FNA) and quercetin (QUE)), natural flavonoids (biflavonoids such as agatisflavone (ATF), 7?-O-methylagatisflavone (OMA), amentoflavone (AMF) and (DOF)) and thiochromanone (TCR) were performed in different solvents (acetonitrile (ACN), ethanol (ETOH), cyclohexane (CEX), dichloromethane (DCM) and milli-Q water (AD)). Irradiation of TFA, SDF and TCR in acetonitrile, employing the nanosecond laser flash photolysis, lead to the formation of their corresponding triplet excited state. Fluorescence emission spectroscopy studies showed that commercial and natural flavonoids and thiochromanone are not fluorescent. UV/visible spectroscopy studies for QUE, ATF, OMA, AMF and DOF, in the same previous solvents, revealed that for these flavonoids the ground-state absorption spectrum in polar solvents, such as water or PBS (pH=7.4), is completely different than the obtained in dichloromethane. This difference is more pronounced for ATF. For DOF the absorption spectrum in water shows remarkable variations when compared to that in PBS. The interaction between BSA and the flavonoids QUE, ATF, OMA, AMF and DOF in PBS solution, pH = 7.4, was studied by UV/visible spectroscopy, fluorescence emission spectroscopy, circular dicroism and molecular modelling. From these studies it was clearly demonstrated that the interaction observed was directly dependent on the flavonoid concentration and almost independent on temperature variation. The ground state absorption spectrum for BSA showed a hypsochromic effect on the absorption band around 208 nm, corresponding to the n?* transition of the BSA ?-helix structure, as a function of flavonoid concentration. Similar behavior was observed for the absorption at 280 nm, corresponding to the tryptophan absorption in BSA. The fluorescence emission spectrum for BSA in the presence of QUE, ATF, OMA, AMF and DOF, in PBS, at T = 22?C, 27?C, 32?C, 37?C and 42?C, shows a blue-shift on the protein emission as a function of flavonoid concentration. These results suggest that the BSA chromophore is in a more hydrophobic environment when compared with that sensed by the protein in the absence of the flavonoid. In this case, quenching of BSA fluorescence (tryptophan residues) was clearly observed with the high values obtained for the quenching rate constant kq (? 1013 to 1014 L/mol.s) indicating a static quenching process. The distance (r) observed for the tryptophan residues and the flavonoids was smaller than 7 nm, which indicates that there is a reasonable probability for a non-radiative energy transfer process between tryptophan and the flavonoids, based on the F?rster theory for energy transfer. Circular dicroism results at T = 25?C, 37?C and 42?C revealed a significant decrease on the ?-helix percentage for BSA at 208 nm and 222 nm, corresponding to the n?* transition for the secondary structure of BSA, as a function of flavonoid concentration. These effects can be attributed to the formation of a complex BSA/flavonoid which can induce conformational variations on the BSA structure. Molecular modelling indicates that the main regions for the interaction between flavonoids and ASB are located in hydrophobic cavities on the sub-domains IB and IIA, which contain tryptophan residues (Trp-158 and Trp-237). A large hydrophobic cavity containing the Trp-237 is present in the sub-domain IIA, which is responsible for the formation of the complex flavonoid-BSA through a strong interaction flavonoid-tryptophan. / Estudos espectrosc?picos para diversos flavon?ides comerciais (flavona (FVA), alfanaftoflavona (?-NAF), beta-naftoflavona (?-NAF), tioflavona (TFA), S,S-di?xidotioflavona (SDF), flavanona (FNA) e quercetina (QUE)), flavon?ides naturais (biflavon?ides como agatisflavona (ATF), 7?-O-metilagatisflavona (OMA), amentoflavona (AMF) e diidroochnaflavona (DOF)) e tiocromanona (TCR), foram realizados em diferentes solventes (acetonitrila (ACN), etanol (ETOH), cicloexano (CEX), diclorometano (DCM) e ?gua millliQ (AD)). A irradia??o de TFA, SDF e TCR, em acetonitrila, por fot?lise por pulso de laser de nanossegundo, levou ? forma??o de seus respectivos estados excitados triplete. Por espectroscopia de fluoresc?ncia, verificou-se que os flavon?ides comerciais e naturais, e a tiocromanona n?o apresentam emiss?o de fluoresc?ncia. Por espectroscopia de absor??o no ultravioleta/vis?vel (UV-Vis) para QUE, ATF, OMA, AMF e DOF, nestes solventes, percebeu-se que os espectros em presen?a de solventes polares, como AD, foram bem diferentes dos espectros em DCM, principalmente, para ATF, e os espectros em solu??o de tamp?o PBS (pH = 7,4) foram semelhantes aos em AD, exceto para DOF, apresentando mudan?as substanciais. A intera??o entre ASB e os flavon?ides (QUE, ATF, OMA, AMF e DOF) em solu??o tamponada (PBS, pH = 7,4) foi estudada por espectroscopia no ultravioleta/vis?vel, espectroscopia de emiss?o de fluoresc?ncia, dicro?smo circular e modelagem molecular sendo diretamente dependente da concentra??o adicionada de flavon?ides e muito pouco dependente com a varia??o da temperatura. No UV-Vis ocorreu deslocamento para o azul das bandas de absor??o pr?ximas a 208 nm (correspondente a ASB, referente ?s transi??es n?* da estrutura ?-h?lice da albumina) e 280 nm (correspondente ao triptofano da ASB), em fun??o do aumento de concentra??o dos flavon?ides. Na espectroscopia de fluoresc?ncia (T = 22?C, 27?C, 32?C, 37?C e 42?C) houve deslocamento para o azul na emiss?o da prote?na com o aumento da concentra??o dos flavon?ides, sugerindo que o crom?foro da ASB est? em um ambiente mais hidrof?bico em rela??o ?quele quando para ASB livre. Neste caso, observou-se supress?o da fluoresc?ncia de ASB (res?duos de triptofano), como consequ?ncia de um processo de supress?o est?tica como demonstrado pelos altos valores observados para kq (? 1013 a 1014 L/mol.s). A dist?ncia entre os res?duos de triptofano e os flavon?ides (r) foi menor que 7 nm, um indicativo da grande probabilidade de ocorrer transfer?ncia de energia entre ASB e flavon?ides, de acordo com a teoria de transfer?ncia de energia n?o-radiativa de F?rster (Teoria de F?rster). No dicro?smo circular (T = 25?C, 37?C e 42?C) foi verificada uma diminui??o do % de ?-h?lice da ASB em 208 nm e 222 nm (regi?es de transi??o n?* da estrutura secund?ria ?-h?lice da ASB no espectro de absor??o UV), devido ao aumento de concentra??o dos flavon?ides. Esses efeitos podem ser atribu?dos ? forma??o de um complexo flavon?ide-ASB que pode estar induzindo varia??es conformacionais na ASB. Por modelagem molecular, atrav?s do programa docking, percebeuse que as regi?es principais para a liga??o dos flavon?ides com os s?tios de liga??o da ASB est?o localizadas em cavidades hidrof?bicas nos subdom?nios IB e IIA (consistentes com os s?tios I e II) e os res?duos de triptofano (Trp-158 e Trp-237) de ASB est?o nesses subdom?nios, respectivamente. Existe uma grande cavidade hidrof?bica presente no subdom?nio IIA, onde os flavon?ides podem se ligar com o res?duo de triptofano Trp-237 (melhor s?tio de liga??o), formando o complexo flavon?ide-ASB.

Micro-scale processing (MSP) techniques are miniaturized version of upstream and downstream conventional unit operations that are designed to accelerate the pace of bioprocess design and development. Previous ‘dead end’ filtration studies have demonstrated the usefulness of this concept for membrane filtration processes. However, these experiments were performed without stirring which is the most common strategy to control the effects of concentration polarization and fouling on filtration performance. In this work, the pressure-driven stirred conditions of a conventional stirred-cell module were integrated with a 96-well filter plate to develop a high throughput technique called ‘stirred-well filtration’ (SWF). The design allowed for up to eight constant flux filtration experiments to be conducted at once using a multi-rack programmable syringe pump and a magnetic lateral tumble stirrer. An array of pressure transducers was used to monitor the transmembrane pressure (TMP) in each well. The protein sieving behavior and fouling propensity of Omega™ ultrafiltration membranes were assessed via a combination of hydraulic permeability measurements and protein sieving tests in constant filtrate flux mode. The TMP profile during filtration of bovine serum albumin (BSA) solution was strongly dependent on the stirring conditions – for example the maximum TMP in the stirred wells were an average of 7.5, 3.8, and 2.6 times lower than those in the unstirred wells at filtrate fluxes of 12, 36, and 60 LMH (5, 15, and 25 μL/min) respectively. The consistency of the data across different wells for the same stirring condition was very good. To demonstrate the effectiveness of the SWF technique, the eight tests for a simple 2^2 factorial design-of-experiments (DOE) test with duplicates was run to evaluate the effect of solution pH and salt concentration on protein filtration. The combination of SWF with statistical methods such as DOE is shown to be an effective strategy for high-throughput optimization of membrane filtration processes. / Dissertation / Master of Applied Science (MASc)

Biologics are large, complex therapeutic agents generally produced from living organisms. One group of biologics is peptide/protein based. Biological agents offer unique advantages over traditional therapeutics including longer half-lives, higher specificity, greater efficacy, and reduced off-target effects. However, protein/peptide based drugs suffer from both delivery and stability issues. The higher order of protein structures (secondary, tertiary, etc.) derive ~80% of their conformational stability from paltry hydrophobic effects, with net stabilization of 5-15 kcal/mole observed for many proteins. Loss of conformational stability can lead to increased aggregation, precipitation, and degradation; and reduced activity and side effects. To increase stability and improve other properties of the therapeutic agent, additives, referred to as excipients, are included in their formulation. Generally, stabilizing effects from excipients work by imposing enthalpic or entropic penalties on protein/peptide unfolding, increasing the free energy of the denatured state. How excipient stabilizes by what thermodynamic mechanism for a given protein/peptide is not always clear, requiring careful study and optimization for prospective agents. Much effort has gone into understanding excipient protection mechanisms and identifying potential liable regions like amino acid sequence and hydrophobic patches. One area that has received relatively little attention has been the effect of excipients on secondary structure (SS) thermodynamic stabilization/destabilization. SS features are major components of biologic conformation in which deviations, even temporary, can lead to aggregation and precipitation. In this study, an experimental system is proposed to quantify and classify helix stabilization in a model peptide and protein. Thermodynamic stability was evaluated via helix unfolding in the peptide, or protein through use of circular dichromism (CD) and nuclear magnetic resonance (NMR) for model peptide polyL-lysine (PLL) and CD and differential scanning calorimetry (DSC) for model protein bovine serum albumin (BSA). The chosen molecular weight of the PLL polymer, adopts a helical structure, is neutral and a monomeric under tested conditions, making it an ideal model to evaluate excipient effects on helix stability. BSA is largely helical in nature, with most changes and aggregation behavior resulting from loss of helicity, making it a logical extension from the model peptide. Results showed stabilization from mannitol and trehalose being mainly enthalpically driven in both peptide and protein. Enthalpic destabilization was observed for PLL and BSA at low to mid concentrations but stabilizing for PLL and destabilizing for BSA at high concentrations, respectively. Moreover, use of entropy-enthalpy compensation (EEC) plots revealed primary stabilization mechanisms at varying excipient concentrations and types allowing for a classification system to be established under different conditions. Peptide/protein based therapeutics typically exist in a complex milieu of additives designed to enhance stability and performance, or allow novel delivery methods (oral, pulmonary, etc.) not typically available to such agents. Ultimately, this work provides a model for understanding excipient effects on helix stability in a complex system. Further work into other SS, higher order structures, as well as complex formulation systems in the model framework described in this work will help to improve the formulation optimization process.

Albumin is a major serum protein and is frequently used as a cell culture supplement. It is crucially involved in the regulation of osmotic pressure and distribution of fluid between different compartments. Alveolar epithelial Na+ transport drives alveolar fluid clearance (AFC), enabling air breathing. Whether or not albumin affects AFC and Na+ transport is yet unknown. We therefore determined the acute and chronic effects of albumin on Na+ transport in fetal distal lung epithelial (FDLE) cells and the involved kinase pathways. Chronic BSA treatment strongly increased epithelial Na+ transport and barrier integrity in Ussing chambers. BSA did not elevate mRNA expression of Na+ transporters in FDLE cells after 24 h. Moreover, acute BSA treatment for 45 min mimicked the chronic effects. The elevated Na+ transport was caused by an increased maximal ENaC activity, while Na,K-ATPase activity remained unchanged. Acute and chronic BSA treatment lowered membrane permeability, confirming the increased barrier integrity observed in Ussing chambers. Western blots demonstrated an increased phosphorylation of AKT and SGK1, and PI3K inhibition abolished the stimulating effect of BSA. BSA therefore enhanced epithelial Na+ transport and barrier integrity by activating the PI3K/AKT/SGK1 pathway