There are long-standing hypotheses that endogenous ion currents act to control cell dynamics in development, wound healing and regeneration. However, the mechanisms employed by cells to detect the electric field (EF) and translate it into a discernable message to drive specific cell behaviors, such as migration, proliferation and differentiation, are not well understood. A better understanding of how cells are able to sense EFs and react to them is vital to understanding physiological mechanisms are involved in regeneration. Ion channel signaling provides a reasonable suspect for mediating these effects based on their documented involvement in proliferation, migration and differentiation. To investigate mechanisms underlying ionic regulation of critical cellular processes in non-excitable cells, a novel, in vivo assay was developed to screen multiple pharmacological inhibitors of ion channels during larval A. mexicanum tail regeneration. This assay was used to identify individual channels that were then targeted for further analysis regarding their involvement in the regenerative process. Chapter 2 presents data from a study that indicates that a wound-like response can be generated in an invertebrate model by application of exogenous, low-amplitude sine-wave electrical stimulation. This was characterized by recruitment of hemocytes at the stimulation site which was dependent on voltage-gated potassium channels. Chapter 3 presents data from a comprehensive and systematic screen of pharmacological compounds against larval salamander tail regeneration that indicates 8 specific target ion channels. This chapter also describes results indicating specific mechanisms by which these channels may be perturbing regeneration. Chapter 4 presents data that indicate that the Anoctamin 1 channel identified in the aforementioned screen is a regulator of cellular proliferation. This is shown to be accomplished via amplification of intracellular calcium surges and a subsequent increase in the activity of the p44/42 MAPK signaling cascade.

Régulation post-traductionnelle des canaux potassiques par les CPKs (Protéines Kinases Dépendantes du Calcium) chez Arabidopsis thaliana : un rôle dans la réponse adaptative aux stress environnementaux ? Les canaux potassiques de la famille Shaker sont des voies majeures du transport de K+ à travers la membrane plasmique. Ces canaux sont impliqués dans l'absorption du potassium depuis le sol et dans sa redistribution dans les parties aériennes de la plante. Ils sont également impliqués dans les mouvements stomatiques et sont pour cela finement régulés. Ils peuvent subir des modifications post-traductionnelles telle que la phosphorylation par des protéines kinases. L'objectif principal de ce travail de thèse s'inscrit dans ce contexte et a pour but d'évaluer l'implication des CPKs dans la régulation post-traductionnelle des canaux Shaker. Les mécanismes d'action de deux CPKs (CPK13 et CPK6) sur la sous-unité entrante KAT2 sont plus spécifiquement étudiés. La première partie du travail de thèse avait pour but de mettre en place le matériel nécessaire pour l'étude en réalisant les clonages, la production des protéines recombinantes et leur caractérisation et testant les premiers effets des CPKs sur l'activité des canaux en expression hétérologue. La seconde partie concerne l'étude du rôle de CPK13 dans la régulation stomatique via la sous-unité KAT2. Nous montrons que la sur-expression de CPK13 dans les lignées transgéniques induit, à court terme, un défaut dans l'ouverture stomatique et également, à long terme, un défaut dans la croissance de la plante. L'existence d'une interaction physique à la membrane plasmique entre CPK13 et KAT2 est montrée à l'aide de la technique de FRET-FLIM. et la phosphorylation de la sous-unité KAT2 par la protéine recombinante CPK13 est montrée in vitro à l'aide de puces à peptides. Enfin, il est montré par voltage-clamp en ovocyte de xénope que CPK13 inhibe l'activité de KAT2 de plus de 60%. Dans la dernière partie, nous présentons un ensemble de résultats qui suggèrent un rôle de CPK6 dans la tolérance au stress salin via son action sur KAT2. Il est en effet connu qu'en cas de stress salin, l'activité des canaux responsables de l'influx de potassium est stimulée, ce qui contribue au maintien d'un faible ratio Na+/K+ dans les cellules. Or, nous montrons un effet activateur de la CPK6 sur l'activité de KAT2, à l'aide de la technique de voltage-clamp. Nous montrons que l'expression du gène CPK6 est très augmentée en réponse à un stress salin et que ceci est concomitant avec le déclenchement d'une vague calcique en réponse à ce même stress. L'utilisation de lignées GUS a permis de vérifier que les patrons d'expression des gènes CPK6 et KAT2 sont identiques chez Arabidopsis thaliana. Enfin, nous montrons une interaction physique entre le canal KAT2 et la protéine CPK6 (FRET-FLIM) et la phosphorylation de KAT2 par CPK6 (puces à peptides). / Post-translational regulation of potassium channels by CPKs (Calcium-dependent Protein Kinases) in Arabidopsis thaliana: a role in adaptive response to environmental stresses?Potassium Shaker channels are major pathways for K+ across plant cell plasma membrane. These channels are implicated in K+ absorption from soil and in its redistribution throughout the plant. They are more particularly implicated in stomatal movement and therefore are finely regulated. They can especially undergo post-translational modifications such as phosphorylation by protein kinases. The aim of this work is to determine the implication of CPKs (Ca2+-dependent Protein Kinases) in Shaker channel post-translational regulation. CPK13 and CPK6 molecular mechanisms of action on Shaker sub-unit KAT2 activity are specifically studied here. First part of this work consisted in cloning, producing and characterizing recombinant proteins and broad screening of CPK effects on Shaker channel activity, using heterologous expression. Second part focuses on the role of CPK13 in stomatal regulation through its effect on KAT2 activity. Over-expression of CPK13 in plant is shown to induce a defect of stomatal aperture and plant growth. KAT2 and CPK13 interaction at the plasma membrane is evidenced by using FRET-FLIM technique. KAT2 phosphorylation by CPK13 is checked on peptide arrays. Finally, a 60% decrease of KAT2 activity by CPK13 is shown using voltage-clamp on xenopus oocyte. Third and last part of this work suggests a role of CPK6 in salt stress resistance through KAT2 channel regulation. Inward potassium channels are indeed known to be activated upon salt stress to contribute keeping a low Na+/K+ ratio. Now, voltage-clamp technique demonstrates that KAT2 activity is increased by CPK6 and salt stress is shown to both increase CPK6 expression and elicit a calcium wave. Using GUS lines evidences KAT2 and CPK6 co-expression in Arabidopsis thaliana (in phloem and guard cells). Physical interaction between these two partners is shown by FRET-FLIM, and KAT2 phosphorylation by CPK13 gets strong support from peptide array assays.

Phospholipase C enzymes are important cell signalling enzymes that catalyse the cleavage of phosphatidylinositol 4,5-bisphophate PI(4,5)P₂ into two biologically active second messenger molecules. These are the inositol 1,4,5-trisphosphate which initiates Ca²⁺ release from the endoplasmic reticulum and the diacylglycerol that activates protein kinase C. Although this basic function is shared between the different isoforms, the PLC family encompasses a diverse collection of proteins with various domain structures in addition to the PLC-specific domains. The neuron-specific “6th family” of these enzymes, PLCηs have most recently been identified with two members, PLCη1 and PLCη2. The aim of the thesis is to characterise the PLCη2 variant from several aspects. Firstly, it describes that PLCη2 possesses a high sensitivity towards Ca²⁺. Secondly, it investigates how the Ca²⁺-induced enzymatic activity of PLCη2 is controlled by its different domains. Also it provides evidence that the pleckstrin homology domain targets PLCη2 to membranes by recognising PI(3,4,5)P₃. Moreover, the uniquely structured EF-hand is responsible for the Ca²⁺-sensitivity of the enzyme. Finally, it is demonstrated that the C2 domain is important for activity. The initial biochemical characterisation is followed by the description of a physiological role for PLCη2. It is shown using a neuroblast model that PLCη2 is crucial for neuronal differentiation and neurite growth. Further efforts were made to assess how PLCη2 is responsible for this effect. It was revealed that it might be involved in regulating intracellular Ca²⁺ dynamics, transcriptional activity and actin reorganisation in differentiating neurons. As the functions of PLCη2 are just beginning to come to light, more aspects for future research are also suggested in the thesis. Hopefully, this and the data presented within the thesis will stimulate even greater interest in this fascinating new field of research.

Pendant les 20 dernières années, les astrocytes, un type de cellules cérébrales ayant été jusque là relativement ignoré des neuroscientifiques, ont peu à peu gagné en notoriété grâce à de multiples découvertes. Contrairement aux neurones, ces cellules ne transmettent pas de signaux électriques mais communiquent par des changements intracellulaires de leurs concentrations en calcium. Des découvertes récentes semblent indiquer que, loin d'agir en autarcie, les astrocytes répondent à l'activité neuronale et sembleraient, bien que cela soit plus débattu, moduler la transmission synaptique par le relargage de molécules spécifiques appelées `gliotransmetteurs' (en référence aux neurotransmetteurs). Comme les neurones, les astrocytes forment des réseaux et communiquent leur activité calcique par diffusion d'un astrocyte à l'autre, formant ainsi de véritables vagues de calcium intercellulaires. Deux réseaux, de neuronnes et d'astrocytes, cohabitent ainsi dans le cerveau ; mais, alors que les réseaux de neuronnes ont fait l'objet de recherches expérimentales et théoriques, les réseaux d'astrocytes restent encore mal connus. Ainsi, il n'a été découvert que très récement que la topologie de ces réseaux pourrait s'averer plus complexe que la vision qui dominait jusqu'alors : celle d'un syncitium astrocytaire dépourvu de spécificités topologiques. Les travaux présentés dans cette thèse portent principalement sur l'effet que ces différentes topologies pourraient avoir sur la signalisation calcique astrocytaire. En effet, autant au niveau subcellulaire qu'inter-cellulaire, les mécanismes gouvernant l'activité calcique des astrocytes restent mals connus. Même dans le cas le plus documenté de la réponse somatique des astrocytes à une stimulation neuronale, les caractéristiques précises que la stimulation doit avoir pour évoquer une réponse des astrocytes sont inconnues. Il en est de même pour la transmission de vagues de calcium dans des réseaux d'astrocytes : on ignore encore les possibles effets de la complexité récemment documentée des réseaux d'astrocytes sur la propagation de ces vagues. Enfin, au niveau subcelulaire, les astrocytes possèdent une morphologie ramifiée extrèmement complexe qui possède elle-même une activité calcique. Les travaux présentés dans cette thèse utilisent des outils de modélisation et de simulation afin de déterminer les répercussions que l'organisation en réseaux des astrocytes pourrait avoir sur leurs dynamiques calciques. En résumé, nous proposons que la topologie des réseaux d'astrocytes a (1) des répercussion au niveau cellulaire, modulant la réponse des astrocytes à des stimulations neuronales ; (2) contrôle la propagation de vagues de calcium inter-astrocytaire en la favorisant lorsque les réseau sont peu couplés ; (3) joue un rôle important dans l’apparition de phénomènes de résonance stochastique. / Over the last 20 years, astrocytes, a hitherto under-investigated type of brain cells, have gradually rose to prominence owing to multiple experimental discoveries. In contrast with neurons, these cells do not propagate electrical signals but communicate instead through changes in their intracellular calcium concentration. Recent discoveries indicate that, far from being isolated cells, astrocytes respond to neuronal activity and, although this is still controversial, seem to modulate synaptic transmission through the release of `gliotransmitter' molecules (in reference to neurotransmitters). Like neurons, astrocyte are organized in networks and communicate their calcium activity by intercellular diffusion of second messengers, forming intercellular calcium waves. Two networks, one of neurons and the other of astrocytes, thus coexist in the brain; while neuronal networks have been the subject of intense experimental and theoretical investigations, astrocyte networks have been much less investigated. Notably, it was only discovered recently that astrocyte network topology could be more complex than what the hitherto dominant view held (astrocytes organized in a syncytium deprived of any topological specificities). The work presented in this thesis is mainly related to the effect that different network topologies could have on astrocyte calcium signaling. The mechanisms that drive calcium signaling in astrocytes are, at both subcellular and intercellular levels, still not completely understood. Even in the best documented case of astrocyte somatic response to neuronal stimulation, the precise characteristic required from the stimulation to elicit an astrocytic response are still unknown. Similarly, the mechanisms governing intercellular calcium wave propagation in astrocyte networks are not fully known; notably, the effects of the recently documented network heterogeneity on calcium wave propagation have not been investigated. Finally, at the subcellular level, astrocytes display an extremely ramified and complex morphology that also hosts calcium activity. The work presented in this thesis make use of modeling and simulation in order to determine the possible effects of astrocyte network organization on their calcium signaling. We propose that astrocyte network topology: (1) controls single-cell responses to neuronal stimulation; (2) drives the propagation of intercellular calcium waves by favoring it when networks are weakly coupled; (3) can determine the appearance of stochastic resonance phenomena; (4) can be modulated by neuronal activity.

Muitos subtipos de receptores são ativados pelo mesmo ligante, mas estão acoplados a diferentes mensageiros secundários podendo produzir sinalização divergente em uma célula, enquanto receptores ativados por diferentes ligantes, mas que compartilham o mesmo mensageiro secundário, podem produzir sinalização convergente. Para examinar as bases mecanísticas que influenciam a proliferação e a diferenciação celular determinamos as funções de liberação intracelular de Ca2+ e a excitabilidade celular mediada pelos receptores purinérgicos e colinérgicos utilizando imageamento de cálcio por microscopia confocal. Para tanto, caracterizamos a participação dos subtipos P2X1-7 e P2Y1,2,4,6 de receptores purinérgicos aos níveis dos transcritos de mRNA e de expressão protéica, assim como pela atividade de induzir os transientes de [Ca2+]i, aumento na concentração livre de cálcio intracelular, durante a diferenciação neuronal de células P19 de carcinoma embrionário, que foram utilizadas como modelo in vitro para o desenvolvimento neuronal precoce. Em células embriônicas os receptores P2Y1,2, P2X4 ou os heteromultímeros de P2X com farmacologia semelhante ao do receptor P2X4 foram os responsáveis pelos transientes de [Ca2+]i induzidos pelo ATP e seus análogos. Ao término da diferenciação neuronal, os receptores P2Y2,6 e P2X2 foram os principais mediadores das respostas de [Ca2+]i. Obtivemos evidências do envolvimento destes receptores na indução da proliferação tanto de células embriônicas como de progenitores neuronais, por ensaios de incorporação de BrdU, e da indução da diferenciação neuronal das células progenitoras, na presença de vários agonistas e antagonistas de receptores purinérgicos. Como resultado desses estudos, a regulação da proliferação e diferenciação celular foi principalmente devida aos subtipos de receptores P2Y1 e P2Y2, já que estes efeitos foram eliminados após a depleção dos depósitos intracelulares de cálcio e pela demonstração de que estes eram os possíveis receptores funcionais. Entre os receptores colinérgicos, fornecemos evidências para a expressão de receptores nicotínicos (nAChRs) e muscarínicos (mAChRs) funcionais durante a diferenciação de células P19. Detectamos a expressão e a atividade dos subtipos de nAChRs formados pelos subtipos α2-α7, β2, β4 e M1-M3 e M5 de mAChRs durante a diferenciação neuronal. As respostas de [Ca2+]i induzidas pelos agonistas dos nAChRs foram observadas em células P19 embriônicas e neuronais. As respostas de [Ca2+]i mediadas pelos receptores muscarínicos, em níveis próximos aos basais em células embriônicas, aumentaram durante a diferenciação. As elevações na [Ca2+]i induzidas pelos nAChRs em células indiferenciadas foram devidas ao influxo de Ca2+ do meio extracelular. Em células diferenciadas em neurônios, os aumentos de transientes de [Ca2+]i induzidos pelos nAChRs foram parcialmente inibidas após o pré-tratamento das células com a rianodina, enquanto as respostas de [Ca2+]i mediadas pelos mAChR não foram afetadas na presença deste composto, sugerindo uma contribuição da liberação de Ca2+ a partir dos depósitos de Ca2+ sensíveis à rianodina para as elevações mediadas pelos nAChRs. Demonstramos também, que a nicotina, agindo através dos nAChRs, inibiu a proliferação em células embriônicas, porém, a induziu em células progenitoras neuronais pela mobilização de Ca2+ dos depósitos intracelulares. A muscarina induziu em células embriônicas o aumento na proliferação via mAChRs acoplados às proteínas Gαq/11, e promoveu a diferenciação neuronal via M2 mAChRs em células precursoras neuronais. Estes dados sugeriram que a acetilcolina agindo via mAChR funciona como um mitógeno que ativa as proteínas quinases de trifosfato de inositol (IP3) e que poderia estar envolvida na síntese de DNA durante os estágios iniciais da neurogênese. Nós ainda provemos evidências que as oscilações de [Ca2+]i são características para cada estágio da diferenciação e são iniciadas pela liberação de Ca2+ mediada pelo IP3. As análises da determinação do fenótipo neuronal na presença de vários inibidores da transdução do sinal induzido pelo cálcio residem na liberação de Ca2+ induzida pelo IP3 é necessária para o progresso da diferenciação neuronal. Assim, os sinais espontâneos de [Ca2+]i são propriedades intrínsecas das células em diferenciação. A modulação de sua freqüência e amplitudes especifica a aquisição de um fenótipo de célula neuronal. / Various receptors subtypes are activated by the same ligand although coupled to different second messengers. These receptors act either by inducing divergent signaling in one cell, whereas in another cell different receptors may stimulate the very same pathways producing convergent signaling. We have characterized intracellular Ca2+- release and -influx mediated by purinergic and cholinergic receptors using calcium imaging by confocal microscopy to evaluate the mechanistic bases which influence cell proliferation and differentiation We have characterized the participation of purinergic subtypes P2X1-7 and P2Y1,2,4,6 receptor subtypes at mRNA transcription and protein expression levels as well as receptor-induced changes in free intracellular calcium concentration ([Ca2+]i) during differentiation of P19 embryonal carcinoma cells as an in vitro model for early neuronal development. The participation of individual P2X and P2Y receptor subtypes in the differentiation process was studied by employing different available purinergic receptor agonists and antagonists. In embryonic cells, P2Y1,2, P2X4 receptors, or P2X-heteromultimers with similar P2X4 pharmacology were responsible for ATP and ATP-analog-induced [Ca2+]i transients. Following completion of neuronal differentiation, P2Y2,6 receptors and P2X2 subtypes were the major mediators of the [Ca2+]i-response. Regulation of cell proliferation and differentiation of P19 embryonic and progenitor cells was mostly due to P2Y1 and P2Y2 receptor activation, as these effects were abolished following depletion of intracellular calcium stores, and they are probably the unique functional P2Y receptors at these stages of differentiation. We also provide evidence for expression of functional nicotinic (nAChRs) and muscarinic acetylcholine receptors (mAChRs) during neuronal differentiation of P19 cells. We have detected expression and activity of nAChRs formed by the subunits α2-α7, β2, β4, and M1-M3 and M5 mAChR subtypes along the differentiation process. Receptor response in terms of nicotinic agonist-evoked Ca2+ flux was observed in embryonic and neuronal-differentiated cells. However, mAChRs-induced calcium responses, merely present in undifferentiated P19 cells, increased during neuronal differentiation. The nAChR-induced [Ca2+]i response in undifferentiated cells was due to Ca2+ influx. However, in differentiated P19 neurons the nAChR-induced [Ca2+]i response was partially inhibited following pretreatment of the cells with ryanodine, while the mAChR-induced response remained unaffected, suggesting the contribution of Ca2+ release from ryanodine-sensitive stores to nAChR- but not mAChR-mediated Ca2+ responses. The presence of functional nAChRs in embryonic cells suggests that these receptors are involved in triggering Ca2+ waves during initial neuronal differentiation. In the present study we have also shown that nicotine, acting via nAChRs, inhibited proliferation in embryonic cells, but induced cell division of progenitor cells by Ca2+ mobilization from internal stores. Stimulation of progenitor cells by muscarine led to an increase in DNA synthesis mainly resulting from activation of Gαq/11-coupled mAChRs. Muscarine as well promoted differentiation of neural precursor cells by activation of M2 mAChRs subtypes. These data suggest that acetylcholine, acting via mAChRs, functions as a mitogen during early neurogenesis. We also provide evidence that oscillations of [Ca2+]i as characteristics for the respective stage of differentiation are initiated by triphosphate inositol (IP3)-mediated Ca2+-release. Neuronal cell fate determination analysis in the presence of various inhibitors of calcium-induced signal transduction underlined that IP3-mediated Ca2+-release is necessary for neuronal differentiation progress. Thus, spontaneous Ca2+-signals are an intrinsic property of differentiating neural precursor cells. Modulation of their frequency and amplitude is believed to direct the acquisition of a defined neuronal phenotype.

Kalzium ist ein wichtiger intrazelluläre Botenstoff, der extrazelluläre Signale in zelluläre Antworten übersetzt. Oft werden externen Signale in wiederholte Anstiege der zytosolischen Kalziumkonzentration übersetzt, die als Oszillationen bezeichnet werden. Diese interdisziplinäre Arbeit kombiniert biologische Experimente, analytische Methoden der theoretischen Physik und Computersimulationen, um den Oszillationsmechanismus zu charakterisieren. Von wesentlicher Bedeutung ist dabei die räumlich inhomogene Verteilung der Kanäle, die Kanalcluster bilden. Dies induziert zusammen mit Pumpen große Konzentrationsgradienten in der Nähe von offenen Clustern, was zu einer hierarchischen Organisation führt. Unter diesem Gesichtspunkt erwartet man, dass Kalziumoszillationen stochastisch sind und auf räumlicher Wechselwirkung beruhen. Diese Hypothese wird im ersten Teil der Arbeit experimentell verifiziert, indem Oszillationen vier verschiedener Zellarten analysiert werden. Der Kalziumsignalweg nutzt thermisches Rauschen konstruktiv um globale Signale zu bilden. Dabei werden molekulare Fluktuationen durch die hierarchische Struktur auf die zelluläre Ebene gehoben. Dies steht im Gegensatz zu der jahrzehntelang weitläufigen Auffassung, dass Kalzium ein repräsentatives Beispiel eines zellulären Oszillators ist. Des weiteren macht dieses Ergebnis Kalzium zu einem ersten natürlichen Beispiel für "array enhanced coherent resonance". Im Modellierungsteil dieser Arbeit wird ein physiologisches Modell für die intrazelluläre Kalziumdynamik entwickelt, das die dreidimensionale Struktur von Zellen berücksichtigt. Es verwendet ein detailliertes Kanalmodell und berücksichtigt sowohl Diffusion als auch Reaktionen mit Puffern. Der entwickelte parallele Green''s cell Algorithmus generiert in Abhängigkeit von physiologischen Parametern das gesamte Spektrum der experimentell bekannten Kalziumsignale und spiegelt die experimentellen Daten des ersten Teils in nahezu perfekter Weise wider. / Calcium is an important second messenger in cells serving as a critical link between extracellular stimuli and their cellular responses. The external signals are translated often into repeated increases of the cytosolic calcium concentration what is referred as oscillations. This work uses an interdisciplinary approach combining experimental techniques from biology, analytical tools from theoretical physics and computer simulations to clarify the question of the oscillation mechanism and how cells can generate globally coordinated calcium signals originated from local stochastic channel dynamics. In this context, the spatial inhomogeneous distribution of channels forming channel clusters plays a key role. Together with calcium pumps and buffers, this induces huge functional concentration gradients close to open clusters, leading to a hierarchical organization of calcium signals. Thus, calcium oscillations are predicted to be stochastic and to have a spatial character. This hypothesis is justified experimentally in the first part of this thesis by analyzing calcium oscillations of four different cell types. Hence, calcium signaling constructively uses thermal noise to build global signals. This contradicts the current opinion of the last decades of calcium being a representative cellular oscillator. Moreover, this makes calcium a first natural example of array enhanced coherent resonance. In the modeling part of this work, a physiological model for intracellular calcium dynamics in three spatial dimensions is developed that takes the spatial arrangement of cells seriously. It uses a detailed channel model for the discrete release sites and takes into account diffusion and buffer interaction of calcium. In dependence on physiologic parameters, the developed parallel Green''s cell algorithm generates in a natural way the whole spectrum of experimentally known calcium signals and fits the experimental data of the first part in an almost perfect manner.

Stochastische Effekte können einen großen Einfluss auf die Funktionsweise von biochemischen Netzwerken haben. Vor allem Signalwege, z.B. Calciumsignaltransduktion, sind anfällig gegenüber zufälligen Schwankungen. Daher stellt sich die wichtige Frage, wie dadurch der Informationstransfer in diesen Systemen beeinträchtigt wird. Zunächst werden eine Reihe von stochastischen Simulationsmethoden diskutiert und systematisch klassifiziert. Dies dient als methodische Grundlage der ganzen Dissertation. Der Schwerpunkt liegt hier auf approximativen und hybriden Ansätzen, einschließlich der Hybridmethode des Softwaresystems Copasi, deren Implementierung Teil dieser Arbeit war. Die Dynamik biochemischer Systeme zeigt in den meisten Fällen einen Übergang von stochastischem zu deterministischem Verhalten mit steigender Partikelzahl. Dieser Übergang wird für Calciumsignaltransduktion und andere Systeme untersucht. Es zeigt sich, dass das Auftreten stochastischer Effekte stark von der Sensitivität des Systems abhängt. Ein Maß dafür ist die Divergenz. Systeme mit hoher Divergenz zeigen noch mit hohen Teilchenzahlen stochastische Effekte und umgekehrt. Schließlich wird der Einfluss von zufälligen Fluktuationen auf die Leistungsfähigkeit von Signalpfaden erforscht. Dazu werden simulierte sowie experimentell gemessene Calcium-Zeitreihen stochastisch an die Aktivierung eines Zielenzyms gekoppelt. Das Schätzen des informationstheoretischen Maßes Transferentropie unter unterschiedlichen zellulären Bedingungen dient zur Abschätzung des Informationstransfers. Dieser nimmt mit steigender Partikelzahl zu, ist jedoch sehr abhängig von der momentanen Dynamik (z.B. spikende, burstende oder irreguläre Oszillationen). Die hier entwickelten Methoden, wie der Gebrauch der Divergenz als Indikator für den stoch./det. Übergang oder die stochastische Kopplung und informationstheoretische Analyse mittels Transferentropie, sind wertvolle Werkzeuge für die Analyse von biochemischen Systemen. / Stochastic effects in biochemical networks can affect the functioning of these systems significantly. Signaling pathways, such as calcium signal transduction, are particularly prone to random fluctuations. Thus, an important question is how this influences the information transfer in these pathways. First, a comprehensive overview and systematic classification of stochastic simulation methods is given as methodical basis for the thesis. Here, the focus is on approximate and hybrid approaches. Also, the hybrid solver in the software system Copasi is described whose implementation was part of this PhD work. Then, in most cases, the dynamic behavior of biochemical systems shows a transition from stochastic to deterministic behavior with increasing particle numbers. This transition is studied in calcium signaling as well as other test systems. It turns out that the onset of stochastic effects is very dependent on the sensitivity of the specific system quantified by its divergence. Systems with high divergence show stochastic effects even with high particle numbers and vice versa. Finally, the influence of noise on the performance of signaling pathways is investigated. Simulated and experimentally measured calcium time series are stochastically coupled to an intracellular target enzyme activation process. Then, the information transfer under different cellular conditions is estimated with the information-theoretic quantity transfer entropy. The amount of information that can be transferred increases with rising particle numbers. However, this increase is very dependent on the current dynamical mode of the system, such as spiking, bursting or irregular oscillations. The methods developed in this thesis, such as the use of the divergence as an indicator for the transition from stochastic to deterministic behavior or the stochastic coupling and information-theoretic analysis using transfer entropy, are valuable tools for the analysis of biochemical systems.

cAMP-elevating agents such as adenosine and epinephrine (after binding to beta-adrenergic receptor) contribute to local vascular dilation and some of these dilations are endothelium-dependent. Previous intracellular Ca 2+ imaging studies in mouse microvessel endothelial cells reported that addition of adenosine or epinephrine induced a Ca2+ influx which is blocked by CNG channel blockers such as L-cis-diltiazem or LY83583. Inside-out patch clamp studies confirmed the existence of a cAMP-activated current in endothelial cells, strongly suggesting a functional role of CNG, in particular CNGA2, channels in endothelial cells. The current study went further to show that similar Ca2+ influx in response to adenosine or epinephrine occurred in endothelial cells in freshly isolated mouse aortic strips and was again blocked by L-cis-diltiazem. By measuring the isometric force developed in mouse aortic strips, we showed that CNGA2 channel-mediated Ca2+ influx in endothelial cells contributed to the endothelium-dependent vascular dilatation in response to adenosine and epinephrine. / In conclusion, cyclic nucleotides playa vital role in the regulation of intracellular Ca2+ concentration in vascular cells and Jurket T cells. / In Jurkat T cells, cyclic nucleotides regulated Ca2+ mobilization in a different way. Fluorescence-imaging studies showed that cGMP inhibited store-operated Ca2+ influx and histamine-induced Ca 2+ rise in Jurkat T cells through activation of PKG. / Thromboxane A2 (TxA2)-induced smooth muscle contraction has been implicated in cardiovascular, renal and respiratory diseases. This contraction can partly be attributed to TxA2-induced Ca2+ influx, which activates the Ca2+-calmodulin-MLCK pathway. This study aims to identify the channels that mediate TxA2-induced Ca2+ influx in vascular smooth muscle cells. Application of U-46619, a thromboxane A2 mimic, resulted in a constriction in endothelium-denuded small mesenteric artery segments. The constriction relied on the presence of extracellular Ca2+, because removal of extracellular Ca2+ abolished the constriction. This constriction was partially inhibited by a L-type Ca2+ channel inhibitor nifedipine (0.5-1 muM). The remaining component was inhibited by L-cis-diltiazem, a selective inhibitor for CNG channels, in a dose-dependent manner, Another CNG channel blocker LY83583 [6-(phenylamino)-5,8-quinolinedione] had similar effect. In primary cultured smooth muscle cells derived from rat aorta, application of U46619 (100 nM) induced a rise in cytosolic Ca2+, which was inhibited by L-cis-diltiazem. Immunoblot experiments confirmed the presence Of CNGA2 protein in vascular smooth muscle cells, These data suggest a functional role of CNG channels in U-46619-induced Ca 2+ influx and contraction of smooth muscle cells. / Leung, Yuk Ki. / "August 2010." / Adviser: Yao Xiaoxiang. / Source: Dissertation Abstracts International, Volume: 73-04, Section: B, page: . / Thesis (Ph.D.)--Chinese University of Hong Kong, 2011. / Includes bibliographical references (leaves 116-132). / Electronic reproduction. Hong Kong : Chinese University of Hong Kong, [2012] System requirements: Adobe Acrobat Reader. Available via World Wide Web. / Electronic reproduction. [Ann Arbor, MI] : ProQuest Information and Learning, [201-] System requirements: Adobe Acrobat Reader. Available via World Wide Web. / Abstract also in Chinese.

Les protéines de la membrane plasmique jouent un rôle fondamental dans la détection des informations véhiculées par le milieu extracellulaire et l’adaptation des cellules aux variations de l’environnement. Elles font l’objet d’une régulation fine qui permet de moduler leur présence à la membrane et de contrôler les voies de signalisation en aval. Dans ce contexte, les arrestines qui constituent une superfamille de protéines adaptatrices, se sont imposées comme des régulateurs clés depuis la découverte des β-arrestines et arrestines visuelles, spécifiques des eucaryotes supérieurs, et de leur rôle dans la régulation des récepteurs couplés aux protéines G hétéro-trimériques, jusqu’à l’identification plus récente de nouveaux membres apparentés, présents des mammifères jusqu’aux protistes, et partageant un rôle commun de régulation de cargos membranaires. Ce travail de thèse porte sur la caractérisation fonctionnelle de deux représentants du clan arrestine de l’amibe Dictyostelium discoideum, les protéines AdcB et AdcC. Ces deux protéines partagent une même organisation multimodulaire, spécifique aux Dictyostélides, qui associe au cœur arrestine, un domaine putatif C2 de type calcium-binding et deux modules SAMs, respectivement aux extrémités N- et C-terminales des protéines. Nous avons établi que ces domaines apportent des fonctions spécifiques à ces arrestines en leur conférant la capacité de lier des lipides anioniques in vitro en réponse au calcium à travers leur module C2, et de former des structures homo- et hétéro-oligomériques via leurs domaines SAMs. En dépit de ces similarités, AdcB et AdcC présentent un comportement différent in cellulo dans la mesure où seul AdcC transloque à la membrane plasmique en réponse à une élévation du calcium cytosolique, provoquée par la stimulation des cellules par les chimioattractants AMPc et acide folique ou le calcium lui-même. Ces résultats ont été complétés par une étude phénotypique des mutants invalidés pour ces arrestines et la recherche de partenaires qui ouvrent des pistes pour des études futures. / Integral proteins of the plasma membrane play a major role in the detection of environmental cues and in the adaptation of cells to variations of their environment. Regulatory mechanisms modulate their presence at the cell surface and control the signaling cascades activated in response to their stimulation. In this context, members of the arrestin revealed to be key regulators, since the discovery of β- and visual arrestins and their well-described role in the regulation of G-protein coupled receptors in complex organisms, and the more recent identification of arrestin-related proteins, present from mammals to protists and sharing functions in membrane cargo trafficking. This work aims at the functional characterization of two arrestin-related proteins of the social amoeba Dictyostelium discoideum, the AdcB and AdcC proteins. These two members of the arrestin clan share a similar multimodular organization, specific to Dictyostelids, with a putative N-terminal calcium-binding type C2 domain and two C-terminal SAM domains surrounding the arrestin module. We showed that the C2 domain confers calcium-dependent binding properties to anionic lipids in vitro and that the SAM domains allow the self-association and hetero-interaction of the two proteins in complexes of high molecular weight. Despite these similarities, AdcB and AdcC harbor a distinct behavior in vivo as only AdcC translocates to the plasma membrane in response to an intracellular calcium rise triggered by the chemoattractants acid folic and cAMP or extracellular calcium. In parallel, a phenotypic characterization of adcB and adcC single or double null mutants and a search for partners were conducted, that open new avenues for future research on these adaptor proteins.

Dissertation (Ph.D.)--University of South Florida, 2007. / Title from PDF of title page. Document formatted into pages; contains 214 pages. Includes vita. Includes bibliographical references.