La ?-oxidación es un proceso metabólico esencial en las células eucarióticas. Tradicionalmente, esta ruta catabólica ha sido considerada en plantas como la vía principal de degradación de ácidos grasos en las células. Sin embargo, en los últimos años, la ?-oxidación de plantas está siendo objeto de un gran interés científico por su implicación en funciones relacionadas con el desarrollo y la defensa. En este contexto, aunque en estudios bioquímicos previos se había propuesto la participación de reacciones de -oxidación en la biosíntesis de ácido salicílico (SA) y ácido jasmónico (JA), moléculas señalizadoras clave en las respuestas de defensa de plantas frente a patógenos y herida, no se había descrito la implicación de ningún enzima de ?-oxidación hasta la realización de este trabajo. De todos los pasos enzimáticos implicados en esta ruta, la familia de las 3-cetoacil-CoA tiolasas (KAT) son las enzimas y genes menos estudiados. Este trabajo se ha centrado en la caracterización molecular y funcional de los distintos genes que codifican proteínas KAT de Arabidopsis, principalmente del gen KAT2 que codifica la proteína con la función KAT mayoritaria en ?-oxidación en Arabidopsis. Para determinar las posibles funciones del gen KAT2 en procesos relacionados con el desarrollo y con la defensa de las plantas, se generaron plantas transgénicas con pérdida o ganancia de función del gen y otras donde la secuencia promotora de KAT2 se fusionó a genes delatores, las cuales permitieron caracterizar en mayor profundidad el patrón de expresión de este gen en Arabidopsis. Los análisis de expresión realizados demostraron que la herida activa transcripcionalmente genes de -oxidación con un patrón de inducción específico. Concretamente, el gen KAT2 aumentó su expresión a través de una vía de señalización independiente de la señalización mediada por JA y posiblemente dependiente de ácido abcísico. Además, plantas transgénicas con una expresión reducida del gen KAT2 mostrar / Castillo López Del Toro, MC. (2008). Función del gen 3-cetoacil-CoA tiolasa 2 (KAT2) en defensa y desarrollo. Participación de los peroxisomas en las respuestas a herida en Arabidopsis thaliana [Tesis doctoral no publicada]. Universitat Politècnica de València. https://doi.org/10.4995/Thesis/10251/3783 / Palancia

Sudden Infant Death (SIDS) has been associated with medium-chain acyl-CoA dehydrogenase (MCAD) deficiency, an inborn error of fatty acid oxidation. Blood and tissue samples from a large cohort of SIDS victims were analyzed for the presence of dodecanoic acid (C₁₂) by gas chromatography. A subgroup of these cases had a significantly higher blood concentration than age-matched controls, suggesting MCAD deficiency. An animal study using Sprague-Dawley rats was done to mimic the effects of MCAD deficiency. Significantly increased blood concentrations of dodecanoic acid were observed. Decreased values in heart and liver were puzzling findings. The data indicate that dodecanoic acid is a blood marker for MCAD deficiency.

<p>  </p> <p>Biosynthesis of fatty acids and specialized metabolites, such as polyketides, is dependent on the C-C bond forming enzymatic activity of carboxylases and <u>k</u>eto<u>s</u>ynthases (KS). Carboxylases and KS perform complex carbon-carbon bond forming reactions via a ping-pong mechanism; the catalytic interactions of which are still unclear. The KS reaction involves the Claisen condensation of an acylated enzyme with a malonyl-thioester, driven forward by the energy of the malonyl-thioester decarboxylation. Similarly, the carboxylase proceeds via a carboxyl-biotin-enzyme intermediate, and a subsequent C-C bond forming reaction. Engineering the substrate specificity of these enzyme involved in producing polyketides is sought after for the purpose of producing novel, derivative polyketides. These derivative polyketides may have serve as effective new antibiotics, of which discovery has waned. Unfortunately, incomplete understanding of protein-protein interactions, conformational changes, and substrate orientation in catalysis leads to not well informed engineering attempts. A challenge in deducing the catalytic details of enzymes acting on malonyl-thioesters in general is the hyper-reactivity of their β-ketoacid and thioester substrates, which are prone to hydrolysis and decarboxylation. Many structures of malonyl-CoA bound enzymes feature hydrolysis of the thioester, preventing determination of enzyme:substrate interactions in structure-function studies. To work around this problem of innate reactivity, groups have synthesized a variety of acyl-thioester analogs for probing the details of enzyme catalysis with mixed success. The success of these enzyme:analog mechanistic studies appears to hinge upon the similarity of the analog to the natural substrate. Here, we demonstrate the synthesis of near-natural, acyl-thioester analogs, featuring single atom substitutions. Using a novel UV-vis assay, we have determined <em>K</em>i values of our analogs with paradigmatic KSs <em>E. coli</em> FabH. These <em>K</em>i values are marginally higher than the substrate <em>K</em>m values, suggesting the KSs bind the analogs as they would natural substrates. Using this information, we have conducted preliminary X-ray crystallography experiments to determine the carboxylase:analog and KS:analog catalytic interactions, which will allow for new insight into debated C-C bond forming catalytic details. The information presented in this thesis and additional studies on protein-protein interactions can be leveraged into informed engineering studies of PKS enzymes.</p>

Background: Aspirin, the pro-drug of salicylate, is associated with reduced incidence of death from cancers and is commonly prescribed in combination with metformin in individuals with type 2 diabetes. Salicylate activates the AMP-activated protein kinase (AMPK) via Ser108 of the AMPK β1 subunit, a mechanism that is distinct from metformin, which increases AMP:ATP. Many cancers have high rates of fatty acid synthesis and AMPK inhibits this pathway through phosphorylation of acetyl-CoA carboxylase (ACC). It is unknown if targeting the AMPK-ACC-lipogenic pathway using salicylate and metformin may be effective for inhibiting cancer cell survival. Results: Salicylate suppresses clonogenic survival of prostate and lung cancer cells at therapeutic concentrations of aspirin. These clinically achievable concentrations of salicylate activated AMPK per the increasing phosphorylation of ACC and suppressing the activity of mTOR effectors kinase p70-S6 kinase and S6; effects that were enhanced with the addition of metformin and blunted in mouse embryonic fibroblasts (MEFS) deficient in AMPK β1. MEF cells deficient in AMPK β1 were more resistant to salicylates inhibitory effect on proliferation. Supplementation of media with fatty acids and mevalonate reverses the suppressive effects on cell survival indicating the inhibition of de novo lipogenesis is likely important. Conclusions: Salicylate increases ACC phosphorylation, reduces phosphorylation of mTOR targets and inhibits de novo lipogenesis in prostate and lung cancer cells, with concentrations of salicylate achievable through the ingestion of Aspirin (0.25-1.0mM) these effects are blunted in AMPK β1 deficient cells. Effects on AMPK activity via ACC phosphorylation as well as reductions in mTOR signalling targets and de novo lipogenesis are enhanced when used in combination with metformin. Suppressive effects on prostate and lung cancer cell survival are ameliorated when media is supplemented with mevalonate and fatty acids. Pre-clinical studies evaluating the use of salicylates alone and with metformin to inhibit de novo lipogenesis and the growth of prostate and lung cancers are warranted. / Thesis / Master of Science (MSc)

The statin family of hydroxymethylglutaryl coenzyme A reductase (HMGCR) inhibitors, used to control hypercholesterolemia, triggers apoptosis of various human tumour cells. HMGCR is the rate-limiting enzyme of the mevalonate (MVA) pathway, a fundamental metabolic pathway required for the generation of a number of biochemical end-products including cholesterol and isoprenoids, but the contribution of the MVA pathway to human cancer remains largely unexplored. Furthermore, as only a subset of tumour cells has been shown to be highly responsive to statins, the identification of appropriate subsets of patients will be required to successfully advance these agents as anticancer therapeutics. To this end, there were two major aims to this work: 1) Elucidate a molecular rationale for the observed therapeutic index of statin-induced apoptosis in normal and tumour cells; 2) Identify molecular determinants of sensitivity for statin-induced apoptosis in human tumour cells. To address the first aim we demonstrated that dysregulation of the MVA pathway, achieved by ectopic expression of either full length HMGCR (HMGCR-FL) or its novel splice variant lacking exon 13 (HMGCR-D13), increases transformation. Ectopic HMGCR promotes growth of transformed and non-transformed cells under anchorage-independent conditions or as xenografts in immunocompromised mice. We also show that high mRNA levels of HMGCR and four out of five other MVA pathway genes correlate with poor prognosis in primary breast cancer, suggesting the MVA pathway may play a role in the etiology of human cancers. To address the second aim, we show that dysregulation of the MVA pathway is a key determinant of sensitivity to statin-induced apoptosis in multiple myeloma. In a panel of 17 distinct myeloma cell lines, half were sensitive to statin-induced apoptosis and the remainder were insensitive. Interestingly, in sensitive cells, the classic feedback response to statin exposure is lost, a feature we demonstrated could distinguish a subset of statin-sensitive primary myeloma cells. We further illustrated that statins are highly effective and well tolerated in an orthotopic model of myeloma using cells harboring a dysregulated MVA pathway. Taken together, this work provides a molecular rationale and determinants of sensitivity for statin-induced apoptosis of human tumour cells.

Mémoire numérisé par la Direction des bibliothèques de l'Université de Montréal.

Mémoire numérisé par la Direction des bibliothèques de l'Université de Montréal.

High-value industrial oils are essential for many processes and have great economic and environmental impacts. The tung tree produces a high-value seed oil. Approximately 80% of tung oil is α-eleostearic acid, which has a high degree of unsaturation thus giving it properties as a drying oil. The identification of the biological components in tung is imperative to further the knowledge of its processes. Four unique tung acyl-CoA binding proteins, VfACBP3a, VfACBP3b, VfACBP4, and VfACBP6 were identified and the genes encoding them were cloned and analyzed to determine their biological roles. The VfACBPs were observed to be similar to other organisms' ACBPs, especially Arabidopsis thaliana. In addition, each gene was expressed in all tung tissues. They were shown to interact with VfDGAT1 and VfDGAT2, two known components of tung lipid metabolism. Finally, VfACBP3a and VfACBP6 were expressed in the seeds of transgenic plants to study the effects of VfACBP expression on seed lipid fatty acid content.

Introdução: Disfunção diastólica (DD) e diminuição da reserva contrátil do ventrículo esquerdo aumentam o risco cardiovascular de pacientes com hipertensão arterial sistêmica. As estatinas, pelos seus benefícios sobre a fibrose miocárdica, podem melhorar a função diastólica ou reserva contrátil de forma mais eficaz que inibidores da enzima de conversão da angiotensina (I-ECA) nesses pacientes. Objetivos: Investigar o efeito aditivo da estatina ao I-ECA na função diastólica e reserva contrátil de hipertensos com níveis de colesterol limítrofe. Métodos: Pacientes hipertensos com DD e LDL-colesterol < 160mg/dl submeteram-se a uma fase experimental para atingir pressão arterial sistólica (PAS) < 135mmHg e pressão arterial diastólica (PAD) < 85mmHg com enalapril ou enalapril e hidroclorotiazida. Quatro semanas após atingir o objetivo terapêutico, 55 pacientes foram aleatorizados para receber 80mg de sinvastatina (n = 27) ou placebo (n = 28) por um período de 20 semanas. Ecocardiograma de repouso e de estresse com dobutamina foram realizados antes e após o tratamento. O volume máximo do átrio esquerdo (VAE) foi medido pelo método biplanar de Simpson. Foram obtidas as velocidades de Doppler convencional e tecidual (DT) na diástole precoce (E, e) e diástole tardia (A, a) em repouso e durante estresse. As velocidades de DT foram a média dos 4 anéis mitrais basais. A reserva contrátil e a reserva diastólica do VE foram calculadas. A PA foi aferida mensalmente em consultório e o perfil lipídico foi dosado a cada 2 meses. Resultados: Após 20 semanas, a sinvastatina reduziu significativamente a PAS (-4±2mmHg; p=0,02), os níveis de colesterol total (-47±6 para estatina versus 6,2±5mg/dl para placebo; p<0,0001), LDL-colesterol (-41±5 para estatina versus 9,6±4mg/dl para placebo; p<0,0001) e triglicérides (-22,8±11,1 para estatina versus 15,3±8,3mg/dl para placebo; p<0,01). A razão E/A aumentou significativamente no grupo estatina (1,00±0,05 para 1,18±0,06 para estatina versus 1,06±0,05 para 1,06±0,04 para placebo; p=0,03), ao mesmo tempo em que o VAE reduziu significativamente neste grupo quando comparado ao placebo (24,5±0,9 para 21,1±0,8ml/m² para estatina versus 23,5±1,0 para 23,2±1,1ml/m² para placebo; p=0,048). A velocidade de e aumentou marginalmente no grupo estatina (9,6±0,6 para 10,2±0,5cm/s; p=0,05), mas sem diferença entre os grupos. A reserva contrátil aumentou significativamente em ambos os grupos (0,53±0,03 para 0,66± 0,05, p=0,009 para placebo versus 0,58±0,05 para 0,70±0,05, p=0,02 para estatina). Não houve correlação entre razão E/A, VAE e mudanças na pressão arterial ou níveis de colesterol. Houve uma moderada correlação positiva entre pressão arterial e LDL-colesterol (r=0,54; p=0,004). Conclusões: 1) A adição da sinvastatina ao enalapril melhora parâmetros de função diastólica em pacientes hipertensos com níveis de colesterol limítrofe, sendo este efeito independente da redução da pressão arterial ou do colesterol. 2) A PAS reduz com a sinvastatina, sendo esta redução correlacionada à redução do LDL-colesterol. 3) A reserva contrátil melhora com o tratamento com enalapril independente do uso da sinvastatina / Background: Diastolic dysfunction (DD) and decreased contractile reserve associated with hypertension are a surrogate for increased cardiovascular risk. Statins have experimental benefits on myocardial fibrosis, and could improve diastolic function or contractile reserve to a greater extend than ACE-inhibitors in hypertension. Objectives: Test in a double-blinded, placebo-controlled randomized study the effects of simvastatin added to enalapril treatment on DD and contractile reserve in hypertensive patients with average cholesterol levels. Methods: Hypertensive patients with DD and LDL-cholesterol < 160mg/dl underwent a run-in phase to achieve a systolic blood pressure (SBP) < 135mmHg and diastolic blood pressure (DBP) < 85mmHg with enalapril. Hydrochlorothiazide was added when need to achieve SBP or DBP control. Four weeks after reaching the optimum anti-hypertensive regimen, 55 patients were randomized to receive 80mg simvastatin (n = 27) or placebo (n = 28) for a period of 20 weeks. Transthoracic echocardiograms at rest and with dobutamine stress were performed before and after treatment. Left atrial volume (LAV) was measured by biplane modified Simpsons rule. Conventional mitral Doppler velocities were obtained at early diastole (E), late diastole (A) and E/A ratio was calculated, also Tissue Doppler velocities from mitral annulus (average from 4 basal walls) were measured at early diastole (e), late diastole (a) and systole (s); both at rest and during stress. The contractile and diastolic reserves were calculated at low dose of dobutamine stress. Blood pressure was measured monthly and lipid profile was analyzed every two months. Results: After 20 weeks, statin group showed a significant decrease in SBP (-4±2mmHg; p=0.02), total cholesterol (-47±6 for statin and 6.2±5mg/dl for placebo; p<0,0001), LDL-cholesterol (-41±5 for statin and 9.6±4mg/dl for placebo; p<0,0001) and tryglicerides levels (-22.8±11 for statin and 15.3±8mg/dl for placebo; p<0,01). E/A ratio increased significantly in statin group (1±0.05 to 1.18±0.06 for statin and 1,06±0,05 to 1,06±0,04 for placebo; p=0.03) at the same time that left atrial volume decreased (24.5±0.9 to 21.1±0.8ml/m² for statin and 23.5±1.0 to 23.2±1.1ml/m² for placebo; p=0.048). Moreover, e velocity had a trend to increase in statin (9.6±0.6 to 10.2±0.5cm/s; p=0.05) but there was no difference from placebo. Contractile reserve increased equally in both groups at lower dose of dobutamine (0.53±0.03 to 0.66±0.05, p=0.009 for placebo; 0.58±0.05 to 0.70±0.05, p=0.02 for statin). There was no correlation between E/A ratio, LAV and changes in blood pressure or cholesterol levels. There was a positive moderate correlation of blood pressure and LDL-cholesterol changes (r=0.54; p=0.004). Conclusions: 1) Simvastatin added to enalapril treatment in hypertensive patients with average cholesterol levels improves parameters of diastolic function independent of blood pressure or cholesterol changes. 2) Simvastatin decrease in SBP is correlated with LDL-cholesterol decrease. 3) Contractile reserve improves with hypertensive treatment irrespective to treatment with simvastatin

Cheng Wai Ring Caroline. / Thesis (M.Phil.)--Chinese University of Hong Kong, 2004. / Includes bibliographical references (leaves 74-84). / Abstracts in English and Chinese. / Acknowledgement --- p.i / Abstract --- p.ii / 摘要 --- p.iv / Table of contents --- p.vi / Publications --- p.x / List of figures --- p.xi / List of tables --- p.xii / Abbreviations --- p.xiii / Chapter Chapter 1 --- Introduction / Chapter 1.1 --- Coronary Heart Disease --- p.2 / Chapter 1.1.1 --- Epidemiology --- p.2 / Chapter 1.2 --- Hypercholesterolemia and CHD --- p.3 / Chapter 1.2.1 --- Atherosclerotic plaque and lipoprotein --- p.4 / Chapter 1.2.2 --- NCEP ATP III guidelines --- p.5 / Chapter 1.2.2.1 --- CHD risk assessment --- p.5 / Chapter 1.2.2.2 --- Target lipid control --- p.8 / Chapter 1.2.2.3 --- Therapeutic lifestyle changes --- p.9 / Chapter 1.2.2.4 --- Pharmacological interventions --- p.10 / Chapter 1.2.2.5 --- Adherence to lipid-lowering therapy --- p.13 / Chapter 1.3 --- Adherence to drug therapy --- p.14 / Chapter 1.3.1 --- Definition of adherence --- p.14 / Chapter 1.3.2 --- Methods to assess adherence --- p.16 / Chapter 1.3.2.1 --- Expressions of adherence measurements --- p.20 / Chapter 1.3.3 --- Time effect on adherence --- p.21 / Chapter 1.3.4 --- Predictors of adherence --- p.22 / Chapter 1.3.5 --- Impact of poor adherence to statins --- p.23 / Chapter 1.4 --- Objectives and hypotheses --- p.25 / Chapter Chapter 2 --- Materials and Methods / Chapter 2.1 --- Study site --- p.27 / Chapter 2.2 --- Patient selection criteria --- p.28 / Chapter 2.2.1 --- Inclusion criteria --- p.28 / Chapter 2.2.2 --- Exclusion criteria --- p.29 / Chapter 2.3 --- Patient recruitment --- p.30 / Chapter 2.4 --- Assessments --- p.32 / Chapter 2.4.1 --- Adherence assessment --- p.32 / Chapter 2.4.1.1 --- Electronic monitoring --- p.32 / Chapter 2.4.1.2 --- Patient report --- p.33 / Chapter 2.4.1.3 --- Pill count --- p.34 / Chapter 2.4.1.4 --- Predictors of adherence --- p.34 / Chapter 2.4.2 --- Clinical outcome assessment --- p.35 / Chapter 2.4.2.1 --- Lipid control --- p.35 / Chapter 2.4.3 --- Economic outcome assessment --- p.35 / Chapter 2.4.3.1 --- Total direct medical cost --- p.35 / Chapter 2.4.3.2 --- Healthcare cost per member per month --- p.36 / Chapter 2.5 --- Sample size --- p.36 / Chapter 2.6 --- Statistical analysis --- p.37 / Chapter Chapter 3 --- Results / Chapter 3.1 --- Study sample --- p.40 / Chapter 3.1.1 --- Demographic characteristics --- p.41 / Chapter 3.1.2 --- Co-morbidity factors --- p.42 / Chapter 3.2 --- Adherence measurement --- p.44 / Chapter 3.2.1 --- Electronic monitoring --- p.44 / Chapter 3.2.2 --- Patient report --- p.45 / Chapter 3.2.3 --- Pill Count --- p.46 / Chapter 3.2.4 --- Correlation among methods for measuring adherence --- p.47 / Chapter 3.2.5 --- Trend of adherence and persistence over time --- p.48 / Chapter 3.2.6 --- Independent predictors of adherence --- p.49 / Chapter 3.3 --- Outcome assessment --- p.52 / Chapter 3.3.1 --- Clinical outcomes --- p.52 / Chapter 3.3.2 --- Economic outcomes --- p.52 / Chapter 3.4 --- Association between adherence and clinical outcomes --- p.53 / Chapter 3.4.1 --- Adherence and LDL-C reduction --- p.53 / Chapter 3.4.2 --- Adherence and NCEP ATP III target --- p.55 / Chapter 3.5 --- Association between adherence and economic outcomes --- p.55 / Chapter 3.5.1 --- Adherence and healthcare utilization --- p.55 / Chapter Chapter 4 --- Discussion and Conclusion / Chapter 4.1 --- Discussion --- p.59 / Chapter 4.1.1 --- Accuracy of patient report and pill count --- p.59 / Chapter 4.1.2 --- Persistence to statin therapy over time --- p.62 / Chapter 4.1.3 --- Predictors for patient adherence --- p.63 / Chapter 4.1.4 --- Clinical impacts of patient adherence --- p.66 / Chapter 4.1.5 --- Economic impacts of patient adherence --- p.68 / Chapter 4.1.6 --- Limitations --- p.70 / Chapter 4.2 --- Conclusion --- p.71 / References --- p.74 / Appendices / Appendix A-1. Framingham risk scoring system for male --- p.86 / Appendix A-2. Framingham risk scoring system for female --- p.87 / Appendix B-1. Information sheet provided to nurses of the Cardiology clinic --- p.88 / Appendix B-2. Information sheet provided to nurses of the Diabetes clinic --- p.89 / Appendix B-3. Information sheet provided to nurses of the Lipid clinic --- p.90 / Appendix C. Data collection form --- p.91 / Appendix D. Instruction sheet provided to the study patient --- p.94 / Appendix E. Unit cost of items from electronic dispensing record and Hong Kong Gazette 2003 for estimating total direct medical cost --- p.95