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  • About
  • The Global ETD Search service is a free service for researchers to find electronic theses and dissertations. This service is provided by the Networked Digital Library of Theses and Dissertations.
    Our metadata is collected from universities around the world. If you manage a university/consortium/country archive and want to be added, details can be found on the NDLTD website.
41

Simulations of Skin Barrier Function: Free Energies of Hydrophobic and Hydrophilic Transmembrane Pores in Ceramide Bilayers

Anwar, Jamshed, Notman, R., Noro, M.G., den Otter, W.K., Briels, W.J. January 2008 (has links)
No / Transmembrane pore formation is central to many biological processes such as ion transport, cell fusion, and viral infection. Furthermore, pore formation in the ceramide bilayers of the stratum corneum may be an important mechanism by which penetration enhancers such as dimethylsulfoxide (DMSO) weaken the barrier function of the skin. We have used the potential of mean constraint force (PMCF) method to calculate the free energy of pore formation in ceramide bilayers in both the innate gel phase and in the DMSO-induced fluidized state. Our simulations show that the fluid phase bilayers form archetypal water-filled hydrophilic pores similar to those observed in phospholipid bilayers. In contrast, the rigid gel-phase bilayers develop hydrophobic pores. At the relatively small pore diameters studied here, the hydrophobic pores are empty rather than filled with bulk water, suggesting that they do not compromise the barrier function of ceramide membranes. A phenomenological analysis suggests that these vapor pores are stable, below a critical radius, because the penalty of creating water-vapor and tail-vapor interfaces is lower than that of directly exposing the strongly hydrophobic tails to water. The PMCF free energy profile of the vapor pore supports this analysis. The simulations indicate that high DMSO concentrations drastically impair the barrier function of the skin by strongly reducing the free energy required for pore opening. / EPSRC
42

Etude de la perméabilisation de la membrane plasmique et des membranes des organites cellulaires par des agents chimiques et physiques / Study of plasma membrane and organelles membranes permeabilization by chemical and physical agents

Ménorval, Marie-Amélie de 25 November 2013 (has links)
Il est possible de perméabiliser la membrane plasmique des cellules par des agents chimiques (tels que les polyéthylènes glycols ou le diméthylsulfoxyde) ou par des agents physiques (tels que les ultrasons ou les impulsions électriques). Cette perméabilisation peut être réversible ou non, ce qui signifie qu’après la perméabilisation, la membrane retrouve son intégrité et ses propriétés d’hémi-perméabilité ou pas. Ces techniques peuvent être utilisées pour faire rentrer des médicaments ou des acides nucléiques dans les cellules ou pour générer des fusions cellulaires. Une approche récente, la dynamique moléculaire, utilise des simulations numériques pour prédire les effets des agents perméabilisants sur les membranes à l’échelle moléculaire, et permet d’apporter de nouvelles données pour comprendre les mécanismes moléculaires, encore peu connus à ce jour.Les impulsions dites « classiques » en électroperméabilisation, de l’ordre de la dizaine de millisecondes à la centaine de microsecondes et d’amplitude de champ de l’ordre de 100 kV/m, perméabilisent la membrane plasmique uniquement. Cependant, récemment, des impulsions plus courtes, dites impulsions nanoseconde (quelques nanosecondes) et de plus grande amplitude de champ (de l’ordre de 10 MV/m) ont été utilisées et permettent d’affecter également les membranes des organites cellulaires. Les travaux de cette thèse portent dans un premier temps sur les effets perméabilisants d’un agent chimique (le diméthylsulfoxyde, DMSO) en comparant les modèles prédictifs de la dynamique moléculaire avec des expériences in vitro sur des cellules. Le modèle numérique prédit trois régimes d’action en fonction de la concentration du DMSO. Utilisé à faible concentration, il y a déformation de la membrane plasmique. L’utilisation d’une concentration intermédiaire entraîne la formation de pores membranaires et les fortes concentrations de DMSO ont pour conséquence la destruction de la membrane. Les expériences in vitro faites sur des cellules ont confirmé ces résultats en suivant l’entrée de marqueurs de perméabilisation. Cette étude a été comparée avec la perméabilisation par un agent physique (les impulsions électriques). Dans un deuxième temps, ces travaux traitent du développement et de l’utilisation d’un nouveau dispositif d’exposition des cellules aux impulsions nanoseconde qui permet d’appliquer des champs électriques très élevés et d’observer par microscopie leurs au niveau cellulaire. Pour finir, ce dispositif a été utilisé avec des impulsions nanoseconde pour générer des pics calciques dans de cellules souches mésenchymateuses qui présentent des oscillations calciques spontanées liées à leur état de différenciation. Ces pics induits sont dus à la libération de calcium stocké dans les organites et/ou à la perméabilisation de la membrane plasmique permettant l’établissement d’un flux de calcium intramembranaire. Il est aussi possible d’utiliser des impulsions microseconde pour générer des pics calciques dans ces cellules. Dans ce cas, les pics calciques ne sont dus qu’à la perméabilisation de la membrane plasmique. En jouant sur l’amplitude des champs électriques appliqués et sur la présence ou l’absence de calcium externe, il est possible de manipuler les concentrations calciques cytosoliques en mobilisant le calcium interne ou externe. Une des particularités de ces nouveaux outils est de pouvoir être déclenchés et arrêtés instantanément, sans réminiscence, contrairement aux molécules chimiques permettant de produire des pics calciques. Ces outils pourraient donc permettre de mieux comprendre l’implication du calcium dans des mécanismes comme la différenciation, la migration ou la fécondation. / It is possible to permeabilize the cellular plasma membrane by using chemical agents (as polyethylen glycols or diméthylsulfoxyde) or physical agents (as ulstrasounds or electric pulses). This permeabilization can be reversible or not, meaning that after the permeabilization, the membrane recovers its integrity and its hemi-permeable properties. These techniques can be used for the uptake of medicines or nucleic acids or to generate cellular fusions. A recent approach, the molecular dynamics, uses numerical simulations to predict the effects of permeabilizing agents at the molecular scale, allowed generating of new data to understand the molecular mechanisms that are not completely known yet.The pulses so called “classical” in electropermeabilization, from the range of the ten of milliseconds to the hundred of microseconds and with a field amplitude in the range of 100 kV/m, can only permeabilize the plasma membrane. However, more recently, shorter pulses, so called nanopulses (few nanosecondes) and with an higher field amplitude (in the range of 10 MV/m) have been used and allow to affect also cellular organelles membranes.This thesis is, in a first time, about the permeabilizing effects of a chemical gent (the diméthylsulfoxyde, DMSO) by comparing predictive models from molecular dynamics with experiments in vitro on cells. The numerical model predicts three regimes of action depending on the DMSO concentration. Used at low concentration, there is a plasma membrane deformation. The use of an intermediate concentration lead to membrane pores formation and higher DMSO concentrations resulted in membrane destruction. The experiments done in vitro on cells confirmed these results using the following of permeabilization markers. This study has been compared to permeabilization due to a physical agent (electric pulses).Secondly, it is about the development and the use of a new cell exposure device for nanopulses that permit to apply very high electric fields and to observe induced cellular effects simultaneously by microscopy.To finish, this device has been used with nanopulses to generate calcium peaks in mesenchymal stem cells that are presenting spontaneous calcium oscillations in correlation to their differentiation state.. These induced peaks are due to the release of the calcium stored in organelles and/or to plasma membrane permeabilization leading to a intramembrane calcium flux establishment. It is also possible to use microsecond pulses to generate calcium peaks in these cells. In this case, the calcium peaks are due to the plasma membrane permeabilization . By changing the amplitude of the applied electric fields and the presence or the absence of external calcium, it is possible to manipulate cytosolic calcium concentrations by mobilizing internal or external calcium. One feature of these new tools is to be triggered and stopped instantly without reminiscence, unlike chemical molecules permitting the production of calcium peaks. These tools could therefore lead to a better understanding of the involvement of calcium in mechanisms such as differentiation, migration or fertilization.
43

Estrutura e ambiente local de dimetil sulfóxido (DMSO) em diferentes meios iônicos / Structure and local environment of dimethyl sulfoxide (DMSO) in different ionic media

Avila, Jocasta Neves Libório de 29 October 2018 (has links)
Apesar de ser utilizado há muito tempo como solvente para espécies orgânicas e inorgânicas, bem como carreador de fármacos, muitos aspectos relativos à auto-associação intermolecular do dimetil sulfóxido (DMSO) e às suas interações com espécies iônicas são ainda motivos de controvérsia na literatura. No presente estudo, a estrutura e ambiente local de dimetil sulfóxido (DMSO) em diferentes meios iônicos foram estudados por meio de três abordagens diferentes. Na primeira abordagem, o efeito de não-coincidência Raman (NCR) observado na banda atribuída ao modo ν(S=O) do DMSO, ca. 1050 cm-1, foi investigado para o líquido puro e em soluções de tetracloreto de carbono (CCl4) e água. Além disso, foi investigado o efeito de espécies iônicas (Kl, KSCN, KBr, TBAN3, TBAOCN, LiClO4, Mg(ClO4)2) na frequência ν(S=O), bem como no NCR das soluções. Os resultados de NCR juntamente com as técnicas de infravermelho, RMN e de medidas de propriedades físico-químicas mostraram que essas espécies iônicas não somente afetam a estrutura de associação do DMSO, como são capazes de interagir fortemente com o solvente. Na segunda abordagem, com a finalidade de modular as propriedades de um líquido iônico, fez-se a análise estrutural das misturas envolvendo DMSO e água como solventes e o líquido iônico EAN como soluto por meio das técnicas de espalhamento de raios-X e de nêutrons. Os resultados mostraram que a estrutura cátion-ânion do EAN é afetada pela presença de DMSO e, que em ambos os solventes são evidentes fortes ligações de hidrogênio entre o cátion EA+ e os oxigênios do solvente e do ânion nitrato. As moléculas de água não afetam drasticamente a estrutura do EAN, pois seu caráter doador/aceptor de LH e seu tamanho permite a formação de pontes entre cátion e o ânion, no entanto, EAN consegue distorcer a rede tridimensional de ligação de hidrogênio da água. Por outro lado, as moléculas de DMSO afastam os ânions da região polar do EA+ na competição pela formação de LH com o cátion e o EAN, por sua vez, provoca a ruptura das estruturas de associação do DMSO. Na terceira abordagem, misturas envolvendo três diferentes SEPs (uma classe de líquidos iônicos); Relina, MUCHCl e DMUCHCl; com DMSO foram investigadas por meio de suas propriedades físico-químicas e por espectroscopia Raman, tendo em vista modular as propriedades dos SEPs. Neste caso, os resultados não apontaram para interações fortes e específicas envolvendo as espécies iônicas e o DMSO, mas a um maior empacotamento do sistema, onde os desvios de suas propriedades físico-químicas com relação à idealidade são negativos e sua mobilidade iônica juntamente com a análise dos espectros vibracionais não evidenciaram interações específicas. No entanto, as viscosidades e densidades diminuíram nas misturas e a mobilidade iônica foi favorecida. / Although it has long been used as a solvent for organic and inorganic species, as well as drug carriers, many aspects concerning the intermolecular self-association of dimethyl sulfoxide (DMSO) and their interactions with ionic species are still controversial in the literature. In the present study, the structure and local environment of dimethyl sulfoxide (DMSO) in different ionic media were studied using three different approaches. In the first approach, the Raman non-coincidence effect (NCE) observed in the band assigned to the DMSO ν(S = O) mode, ca. 1050 cm-1, was investigated for the pure liquid and in its solutions of carbon tetrachloride (CCl4) and water. In addition, the effect of ionic species (K1, KSCN, KBr, TBAN3, TBAOCN, LiClO4, Mg (ClO4)2) on the frequency ν(S = O) as well as the NCE of the solutions were investigated. The results of NCR together with the infrared, NMR and physico-chemical properties measurements showed that these ionic species not only affect the association structure of DMSO, but are also capable of interacting strongly with the solvent. In the second approach, with the purpose of modulating the properties of an ionic liquid, the structural analysis of the mixtures involving DMSO and water as solvents and the ionic liquid EAN as a solute were carried out by X-ray and neutron scattering techniques. The results showed that the cation-anion structure of the EAN is affected by the presence of DMSO and that in both solvents strong hydrogen bonds between the EA+ cation and the oxygen from solvent and from nitrate anion are evident. The water molecules do not affect the structure of the EAN drastically, because its LH donor/acceptor character and its size allows the formation of bridges between cation and anion, however, EAN can distort the hydrogen bonding three-dimensional network in water. On the other hand, the DMSO molecules repels the anions from the polar head of EA+ in the competition in forming LH with the cation, however EAN break down DMSO association structures. In the third approach, mixtures involving three different SEPs (a class of ionic liquids); Relina, MUCHCl and DMUCHCl; with DMSO were investigated by means of their physicochemical properties and by Raman spectroscopy, in order to modulate the properties of SEPs. In this case, the results did not point to strong and specific interactions involving the ionic species and DMSO, but to a greater packaging of the system, where the deviations of its physicochemical properties with respect to the ideality are negative and its ionic mobility together with the analysis of the vibrational spectra showed no specific interactions. However, the viscosities and densities decreased in the mixtures and the ionic mobility was favored.
44

Estrutura e ambiente local de dimetil sulfóxido (DMSO) em diferentes meios iônicos / Structure and local environment of dimethyl sulfoxide (DMSO) in different ionic media

Jocasta Neves Libório de Avila 29 October 2018 (has links)
Apesar de ser utilizado há muito tempo como solvente para espécies orgânicas e inorgânicas, bem como carreador de fármacos, muitos aspectos relativos à auto-associação intermolecular do dimetil sulfóxido (DMSO) e às suas interações com espécies iônicas são ainda motivos de controvérsia na literatura. No presente estudo, a estrutura e ambiente local de dimetil sulfóxido (DMSO) em diferentes meios iônicos foram estudados por meio de três abordagens diferentes. Na primeira abordagem, o efeito de não-coincidência Raman (NCR) observado na banda atribuída ao modo ν(S=O) do DMSO, ca. 1050 cm-1, foi investigado para o líquido puro e em soluções de tetracloreto de carbono (CCl4) e água. Além disso, foi investigado o efeito de espécies iônicas (Kl, KSCN, KBr, TBAN3, TBAOCN, LiClO4, Mg(ClO4)2) na frequência ν(S=O), bem como no NCR das soluções. Os resultados de NCR juntamente com as técnicas de infravermelho, RMN e de medidas de propriedades físico-químicas mostraram que essas espécies iônicas não somente afetam a estrutura de associação do DMSO, como são capazes de interagir fortemente com o solvente. Na segunda abordagem, com a finalidade de modular as propriedades de um líquido iônico, fez-se a análise estrutural das misturas envolvendo DMSO e água como solventes e o líquido iônico EAN como soluto por meio das técnicas de espalhamento de raios-X e de nêutrons. Os resultados mostraram que a estrutura cátion-ânion do EAN é afetada pela presença de DMSO e, que em ambos os solventes são evidentes fortes ligações de hidrogênio entre o cátion EA+ e os oxigênios do solvente e do ânion nitrato. As moléculas de água não afetam drasticamente a estrutura do EAN, pois seu caráter doador/aceptor de LH e seu tamanho permite a formação de pontes entre cátion e o ânion, no entanto, EAN consegue distorcer a rede tridimensional de ligação de hidrogênio da água. Por outro lado, as moléculas de DMSO afastam os ânions da região polar do EA+ na competição pela formação de LH com o cátion e o EAN, por sua vez, provoca a ruptura das estruturas de associação do DMSO. Na terceira abordagem, misturas envolvendo três diferentes SEPs (uma classe de líquidos iônicos); Relina, MUCHCl e DMUCHCl; com DMSO foram investigadas por meio de suas propriedades físico-químicas e por espectroscopia Raman, tendo em vista modular as propriedades dos SEPs. Neste caso, os resultados não apontaram para interações fortes e específicas envolvendo as espécies iônicas e o DMSO, mas a um maior empacotamento do sistema, onde os desvios de suas propriedades físico-químicas com relação à idealidade são negativos e sua mobilidade iônica juntamente com a análise dos espectros vibracionais não evidenciaram interações específicas. No entanto, as viscosidades e densidades diminuíram nas misturas e a mobilidade iônica foi favorecida. / Although it has long been used as a solvent for organic and inorganic species, as well as drug carriers, many aspects concerning the intermolecular self-association of dimethyl sulfoxide (DMSO) and their interactions with ionic species are still controversial in the literature. In the present study, the structure and local environment of dimethyl sulfoxide (DMSO) in different ionic media were studied using three different approaches. In the first approach, the Raman non-coincidence effect (NCE) observed in the band assigned to the DMSO ν(S = O) mode, ca. 1050 cm-1, was investigated for the pure liquid and in its solutions of carbon tetrachloride (CCl4) and water. In addition, the effect of ionic species (K1, KSCN, KBr, TBAN3, TBAOCN, LiClO4, Mg (ClO4)2) on the frequency ν(S = O) as well as the NCE of the solutions were investigated. The results of NCR together with the infrared, NMR and physico-chemical properties measurements showed that these ionic species not only affect the association structure of DMSO, but are also capable of interacting strongly with the solvent. In the second approach, with the purpose of modulating the properties of an ionic liquid, the structural analysis of the mixtures involving DMSO and water as solvents and the ionic liquid EAN as a solute were carried out by X-ray and neutron scattering techniques. The results showed that the cation-anion structure of the EAN is affected by the presence of DMSO and that in both solvents strong hydrogen bonds between the EA+ cation and the oxygen from solvent and from nitrate anion are evident. The water molecules do not affect the structure of the EAN drastically, because its LH donor/acceptor character and its size allows the formation of bridges between cation and anion, however, EAN can distort the hydrogen bonding three-dimensional network in water. On the other hand, the DMSO molecules repels the anions from the polar head of EA+ in the competition in forming LH with the cation, however EAN break down DMSO association structures. In the third approach, mixtures involving three different SEPs (a class of ionic liquids); Relina, MUCHCl and DMUCHCl; with DMSO were investigated by means of their physicochemical properties and by Raman spectroscopy, in order to modulate the properties of SEPs. In this case, the results did not point to strong and specific interactions involving the ionic species and DMSO, but to a greater packaging of the system, where the deviations of its physicochemical properties with respect to the ideality are negative and its ionic mobility together with the analysis of the vibrational spectra showed no specific interactions. However, the viscosities and densities decreased in the mixtures and the ionic mobility was favored.
45

The effect of dimethyl sulfoxide on the induction of DNA strand breaks in plasmid DNA and colony formation of PC Cl3 mammalian cells by alpha-, beta-, and Auger electron emitters 223Ra, 188Re, and 99mTc

Runge, Roswitha, Oehme, Liane, Kotzerke, Jörg, Freudenberg, Robert 16 January 2017 (has links)
BACKGROUND: DNA damage occurs as a consequence of both direct and indirect effects of ionizing radiation. The severity of DNA damage depends on the physical characteristics of the radiation quality, e.g., the linear energy transfer (LET). There are still contrary findings regarding direct or indirect interactions of high-LET emitters with DNA. Our aim is to determine DNA damage and the effect on cellular survival induced by (223)Ra compared to (188)Re and (99m)Tc modulated by the radical scavenger dimethyl sulfoxide (DMSO). METHODS: Radioactive solutions of (223)Ra, (188)Re, or (99m)Tc were added to either plasmid DNA or to PC Cl3 cells in the absence or presence of DMSO. Following irradiation, single strand breaks (SSB) and double strand breaks (DSB) in plasmid DNA were analyzed by gel electrophoresis. To determine the radiosensitivity of the rat thyroid cell line (PC Cl3), survival curves were performed using the colony formation assay. RESULTS: Exposure to 120 Gy of (223)Ra, (188)Re, or (99m)Tc leads to maximal yields of SSB (80 %) in plasmid DNA. Irradiation with 540 Gy (223)Ra and 500 Gy (188)Re or (99m)Tc induced 40, 28, and 64 % linear plasmid conformations, respectively. DMSO prevented the SSB and DSB in a similar way for all radionuclides. However, with the α-emitter (223)Ra, a low level of DSB could not be prevented by DMSO. Irradiation of PC Cl3 cells with (223)Ra, (188)Re, and (99m)Tc pre-incubated with DMSO revealed enhanced survival fractions (SF) in comparison to treatment without DMSO. Protection factors (PF) were calculated using the fitted survival curves. These factors are 1.23 ± 0.04, 1.20 ± 0.19, and 1.34 ± 0.05 for (223)Ra, (188)Re, and (99m)Tc, respectively. CONCLUSIONS: For (223)Ra, as well as for (188)Re and (99m)Tc, dose-dependent radiation effects were found applicable for plasmid DNA and PC Cl3 cells. The radioprotection by DMSO was in the same range for high- and low-LET emitter. Overall, the results indicate the contribution of mainly indirect radiation effects for each of the radionuclides regarding DNA damage and cell survival. In summary, our findings may contribute to fundamental knowledge about the α-particle induced DNA damage.
46

Structural and Spectroscopic Studies of Solvated Metal Ions

Abbasi, Alireza January 2005 (has links)
<p>Crystallographic and spectroscopic studies have been performed of structures, coordination and chemical bonding for series of trivalent metal ions solvated by two oxygen-coordinating solvents, water and dimethyl sulfoxide (DMSO). The hydrated scandium(III) and lanthanoid(III) ions, La to Lu, are surrounded by tricapped trigonal prisms of aqua ligands in the isomorphous series of trifluoromethanesulfonates, [M(H<sub>2</sub>O)<sub>n</sub>](CF<sub>3</sub>SO<sub>3</sub>)<sub>3</sub>. For the smallest ions, M = Er, Tm, Yb, Lu, Sc, the hydration numbers decrease, <i>n</i> = 8.96(5), 8.8(1), 8.7(1), 8.5(1), 8.0(1), respectively, with decreasing size of the ion. The crystal structures at ambient temperature indicate randomly distributed vacancies of the capping oxygen atoms, and <sup>2</sup>H solid-state NMR of the diamagnetic [M(H<sub>2</sub>O)<sub>n</sub>](CF<sub>3</sub>SO<sub>3</sub>)<sub>3</sub>, M = Sc, Lu, Y and La compounds revealed increasing mobility of the water ligands in the coordination sphere with increasing temperature, also for the fully nonahydrated La<sup>III</sup> and Y<sup>III</sup> ions. The stretching force constants of the Ln-O bonds, evaluated from vibrational spectroscopy, increased from 0.81 to 1.16 N cm<sup>-1</sup> for the Ln-6O trigonal prism in a smooth correlation with the bond distances from La to Lu. For the capping Ln-3O bonds the increase from 0.49 to 0.65 N cm<sup>-1</sup> reflects the increased ligand-ligand repulsion with decreasing ion size. This is also the reason for the water deficiency of the Er, Tm, Yb, Lu and Sc salts, and for [Sc(H<sub>2</sub>O)<sub>8.0</sub>](CF<sub>3</sub>SO<sub>3</sub>)<sub>3</sub> the repulsion induced a phase transition at about 185 K that, by low temperature crystallography, was found to distort the coordination of water molecules toward a monocapped trigonal prism around the scandium(III) ion.</p><p>All crystal structures of the octakis(dimethyl sulfoxide)lanthanoid(III) iodides comprise discrete [Ln(dmso)<sub>8</sub>]<sup>3+</sup> complexes surrounded by iodide ions. The lanthanum(III) and praseodymium(III) compounds crystallize in the orthorhombic space group <i>Pbca</i> with more efficient packing than for the heavier and smaller ions in the lanthanoid series, which crystallize in the monoclinic space group <i>P2</i><sub>1</sub>/<i>n</i>. The group 13 metal ions, aluminium(III), gallium(III), indium(III), thallium(III), and also scandium(III) of group 3, form crystalline hexakis(dimethyl sulfoxide) solvates in the space group <i>R</i> 3, with octahedral MO<sub>6</sub> coordination entities, which are increasingly compressed along one threefold axis for increasing ionic size. EXAFS measurements on the solvated ions display similar M-O bond distances in dimethyl sulfoxide solution as in the solid solvates. For all the solid dimethyl sulfoxide solvates the strength and nature of the metal-oxygen bond has been evaluated by normal coordinate analysis of vibrational spectra, and correlated with the S-O stretching vibrational mode.</p><p>Distortions from regular octahedral six coordination are discussed for the hydrated isoelectronic soft mercury(II) and thallium(III) ions in the solid bisaquamercury(II) and trisaquatallium(III) trifluoromethanesulfonates, in terms of pseudo Jahn-Teller effects (PJTE). Mercury(II), generally more strongly influenced by PJTE distortions, displays a 2 + 4 Hg-O coordination forming chains that are held together in sheets by hydrogen bonds and in layers by van der Waals interactions, which explain the fragile structure of the crystals.</p>
47

Structural and Spectroscopic Studies of Solvated Metal Ions

Abbasi, Alireza January 2005 (has links)
Crystallographic and spectroscopic studies have been performed of structures, coordination and chemical bonding for series of trivalent metal ions solvated by two oxygen-coordinating solvents, water and dimethyl sulfoxide (DMSO). The hydrated scandium(III) and lanthanoid(III) ions, La to Lu, are surrounded by tricapped trigonal prisms of aqua ligands in the isomorphous series of trifluoromethanesulfonates, [M(H2O)n](CF3SO3)3. For the smallest ions, M = Er, Tm, Yb, Lu, Sc, the hydration numbers decrease, n = 8.96(5), 8.8(1), 8.7(1), 8.5(1), 8.0(1), respectively, with decreasing size of the ion. The crystal structures at ambient temperature indicate randomly distributed vacancies of the capping oxygen atoms, and 2H solid-state NMR of the diamagnetic [M(H2O)n](CF3SO3)3, M = Sc, Lu, Y and La compounds revealed increasing mobility of the water ligands in the coordination sphere with increasing temperature, also for the fully nonahydrated LaIII and YIII ions. The stretching force constants of the Ln-O bonds, evaluated from vibrational spectroscopy, increased from 0.81 to 1.16 N cm-1 for the Ln-6O trigonal prism in a smooth correlation with the bond distances from La to Lu. For the capping Ln-3O bonds the increase from 0.49 to 0.65 N cm-1 reflects the increased ligand-ligand repulsion with decreasing ion size. This is also the reason for the water deficiency of the Er, Tm, Yb, Lu and Sc salts, and for [Sc(H2O)8.0](CF3SO3)3 the repulsion induced a phase transition at about 185 K that, by low temperature crystallography, was found to distort the coordination of water molecules toward a monocapped trigonal prism around the scandium(III) ion. All crystal structures of the octakis(dimethyl sulfoxide)lanthanoid(III) iodides comprise discrete [Ln(dmso)8]3+ complexes surrounded by iodide ions. The lanthanum(III) and praseodymium(III) compounds crystallize in the orthorhombic space group Pbca with more efficient packing than for the heavier and smaller ions in the lanthanoid series, which crystallize in the monoclinic space group P21/n. The group 13 metal ions, aluminium(III), gallium(III), indium(III), thallium(III), and also scandium(III) of group 3, form crystalline hexakis(dimethyl sulfoxide) solvates in the space group R 3, with octahedral MO6 coordination entities, which are increasingly compressed along one threefold axis for increasing ionic size. EXAFS measurements on the solvated ions display similar M-O bond distances in dimethyl sulfoxide solution as in the solid solvates. For all the solid dimethyl sulfoxide solvates the strength and nature of the metal-oxygen bond has been evaluated by normal coordinate analysis of vibrational spectra, and correlated with the S-O stretching vibrational mode. Distortions from regular octahedral six coordination are discussed for the hydrated isoelectronic soft mercury(II) and thallium(III) ions in the solid bisaquamercury(II) and trisaquatallium(III) trifluoromethanesulfonates, in terms of pseudo Jahn-Teller effects (PJTE). Mercury(II), generally more strongly influenced by PJTE distortions, displays a 2 + 4 Hg-O coordination forming chains that are held together in sheets by hydrogen bonds and in layers by van der Waals interactions, which explain the fragile structure of the crystals.
48

New mono- and dinuclear ruthenium complexes containing the 3,5-bis(2-pyridyl)pyrazole ligand. Synthesis, characterization and applications

Sens Llorca, Cristina 17 March 2005 (has links)
Se han sintetizado dos nuevos complejos mononucleares de Ru, con formula [RuCl2(Hbpp)(dmso)2], a partir de la reacción entre [RuCl2(dmso)4] y Hbpp (3,5-bis(2-piridil)pirazola). El hecho que sólo tres de los seis posibles estereoisómeros se obtengan a partir de esta reacción, se ha racionalizado en base a factores estructurales y electrónicos. Estos complejos se han caracterizado de forma estructural, espectroscópica y electroquímica. En acetonitrilo en medio básico, el isómero trans,cis-[RuCl2(Hbpp)(dmso)2] da lugar a procesos de isomerización de enlace de un ligando dmso cuando el Ru(II) se oxida a Ru(III). Las constantes termodinámicas y cinéticas para el proceso se han determinado por voltametria cíclica. La irradiación de trans,cis-[RuCl2(Hbpp)(dmso)2] y cis(out),cis-[RuCl2(Hbpp)(dmso)2] con luz UV o solar da lugar a reacciones de fotosustitución de un ligando dmso por una molécula de acetonitrilo para dar un nuevo compuesto el cual ha sido caracterizado en solución por técnicas espectroscópicas y electroquímicas. Ambos complejos resultan catalizadores útiles en la transferencia de hidrógeno de isopropanol a acetofenona, obteniéndose 1-feniletanol como único producto y un 42.1% de conversión (36.1 ciclos metálicos) a 80ºC con el isómero trans,cis-[RuCl2(Hbpp)(dmso)2], que resulta significativamente más eficaz que el complejo cis(out),cis-[RuCl2(Hbpp)(dmso)2].La reacción de cis(out),cis-[RuCl2(Hbpp)(dmso)2] con trpy (2,2':6',2"-terpiridina) da lugar a los dos isómeros geométricos del complejo [Ru(Hbpp)(trpy)(Cl)]+, el in y el out. Estos complejos se han aislado y caracterizado por técnicas estructurales, espectroscópicas y electroquímicas. Estos cloro complejos han sido utilizados como precursores para la síntesis de los complejos análogos con ligandos aqua (in,out-[Ru(Hbpp)(trpy)(H2O)]2+) y piridina (in,out-[Ru(Hbpp)(trpy)(py)]2+), los cuales también han sido aislados y caracterizados. Las propiedades ácido-base de los aqua complejos, y del complejo out-py se han estudiado detalladamente por voltametria cíclica y mediante valoraciones espectrofotométricas ácido-base. El tratamiento matemático de los datos así obtenidos nos ha permitido determinar los valores de pKa para los distintos equilibrios de protonación de los complejos en los estados de oxidación II y III. El complejo out-aqua ha demostrado ser un buen catalizador para la oxidación electroquímica del alcohol benzílico, presumiblemente a benzaldehido. La constante de velocidad de segundo orden para el proceso ha sido determinada como 17.1 M-1 s-1, por simulación matemática.El dímero con un puente cloro, [Ru2Cl(bpp)(trpy)2]2+ ha sido preparado por dos rutas sintéticas diferentes. El dímero análogo con un puente acetato se ha obtenido por reacción del cloro dímero con un exceso de acetato sódico. El dímero con dos ligandos aqua [Ru2(bpp)(trpy)2(OH2)2]3+ puede obtenerse por hidrólisis ácida del complejo con un acetato puente o por hidrólisis básica del complejo con un puente cloro. Estos complejos han sido caracterizados por técnicas estructurales, espectroscópicas y electroquímicas. Las soluciones del dímero con dos ligandos aqua en medio ácido resultan inestables a la coordinación de aniones de la solución con el tiempo. Las propiedades ácido-base del dímero con dos aguas coordinadas han sido estudiadas por voltametria cíclica y mediante experimentos de electrólisis a potencial controlado. El pKa para la desprotonación de uno de los ligandos aqua ha sido determinado mediante una valoración espectrofotométrica ácido-base como 6.7. Este valor tan bajo de pKa se atribuye a la formación de la entidad {Ru2O2H3}, favorable termodinámicamente. Los espectros UV-vis para los distintos estados de oxidación del aqua dímero, de RuIIRuII a RuIIIRuIV, han sido obtenidos por oxidación química y electroquímica del complejo. Se han llevado a cabo estudios cinéticos de la oxidación, paso a paso, de RuII,II a RuIV,IV , y se han determinado las constantes de oxidación de segundo orden para los distintos procesos de oxidación. La capacidad del aqua dímero en la oxidación del agua a oxígeno molecular ha sido investigada en solución homogénea utilizando CeIV como oxidante. La evolución de oxígeno se ha demostrado por cromatografia de gases. Se ha obtenido una eficiencia del 73% y 18.6 ciclos catalíticos, cuando 1.83 x 10-6 moles de dímero se han mezclado con un exceso de 100 equivalentes de cerio. El dímero con dos aguas cataliza también la oxidación del agua de forma heterogénea, con el complejo adsorbido sobre una membrana de nafion, aunque la eficiencia es menor. Se ha propuesto un mecanismo intramolecular para la reacción de oxidación del agua. Consiste en la oxidación a 4 electrones del dímero, de RuII,II a RuIV,IV, el cual reacciona con el agua para formar oxígeno y revierte nuevamente al estado de oxidación II,II. Este modelo es consistente con estudios catalíticos de la evolución de oxígeno en función de las concentraciones de cerio y catalizador, llevados a cabo en solución ácida homogénea, que demuestran que la oxidación a 4 electrones del agua se encuentra catalizada por una sola molécula de complejo bajo concentraciones elevadas de cerio. La constante de pseudo-primer-orden para la evolución de oxígeno tiene un valor de 1.4 x 10-2 s-1, que es uno de los valores de constante más elevados obtenidos hasta la fecha. Desafortunadamente, el aqua dímero se desactiva durante el proceso de catálisis dando lugar a una especie naranja, la cual estamos actualmente tratando de caracterizar. / Two new mononuclear Ru complexes with formula [RuCl2(Hbpp)(dmso)2], 2a and 2b, have been prepared from [RuCl2(dmso)4] and Hbpp (3,5-bis(2-pyridyl)pyrazole). The fact that only three (2a and the pair of enantiomers 2b) from the six possible stereoisomers are obtained from this reaction, has been rationalized in terms of structural and electronic factors, particularly the intramolecular hydrogen bond between the inner dmso and the aminic proton of Hbpp. 2a and 2b have been structurally, spectroscopically and electrochemically characterized. In acetonitrile basic media, 2a has proven to undergo linkage isomerization reactions of one dmso ligand when going from RuII to RuIII. The kinetic and thermodynamic constants for this process have been determined by means of cyclic voltammetry. Irradiation of either 2a or 2b with UV or sunlight provokes the replacement of one dmso by an acetonitrile molecule so that a new compound is formed, which has been characterized in solution by spectroscopic and electrochemical techniques. The fact that only one of the two dmso ligands is substituted, compared to related systems where two successive substitutions of dmso for MeCN take place, suggests that the inner dmso is much more stable due to the hydrogen bond with the aminic proton of Hbpp. 2a and 2b have proven to be active catalysts in the hydrogen transfer from 2-propanol to acetophenone, yielding 2-phenylethyl alcohol as the only product and 42.1% conversion (36.1 metal cycles) at 80 ºC for 2a, which is markedly more efficient than 2b.Two geometrical chloro isomers with formula out and in-[Ru(Hbpp)(trpy)(Cl)]+, 2a (out) and 2b (in), are obtained from the reaction of cis(out),cis-[RuCl2(Hbpp)(dmso)2] and trpy (2,2':6',2"-terpyridine). Better yields of these complexes can be obtained by a different route which uses [RuCl3(trpy)] and bpp-BOC as starting materials. These compounds have been isolated and characterized by means of structural, spectroscopic and electrochemical techniques. 2a and 2b have been used as starting materials for the synthesis of the analogous aqua (out and in-[Ru(Hbpp)(trpy)(H2O)]2+; 3a and 3b) and pyridine (out and in-[Ru(Hbpp)(trpy)(py)]2+; 4a and 4b) complexes, which have also been isolated and characterized. The acid-base properties of the aqua complexes, 3a and 3b, and the pyridyne complex 4a have been thoroughly investigated by cyclic voltammetry (Pourbaix diagram) and acid-base spectrophotometric titrations. Mathematical treatment of the experimental data thus obtained has allowed us to determine the pKa values for the different protonation equilibria of the complexes in oxidation states II and III. 3a has been shown to be a good catalyst in the electrochemical oxidation of benzyl alcohol, presumably to benzaldehyde. The second-order rate constant for the process has been determined as 17.1 M-1 s-1 by mathematical simulation. Two different synthetic routes have been used to prepare the chloro-bridge dimer [Ru2(Cl)(bpp)(trpy)2]2+, 1, in good yield. The acetato-bridge dimer [Ru2(O2CCH3)(bpp)(trpy)2]2+, 2, has been obtained from 1 and excess sodium acetate. The diaqua complex [Ru2(bpp)(trpy)2(OH2)2]3+, 3, has been prepared from either basic hydrolysis of 1 or acid hydrolysis of 2. These complexes have been characterized by means of structural, spectroscopic and electrochemical techniques. Long-standing solutions of the diaqua dimer 3 in acidic media have proven to be unstable to coordination of anions from the solution. Crystals of the trifluoroacetato-bridge dimer 4 have been obtained in acidic CF3COOH media after some days. The acid-base properties of the diaqua dimer 3 have been thoroughly investigated by cyclic voltammetric and bulk electrolysis experiments, and the corresponding Pourbaix diagram obtained. The pKa for the one-proton deprotonation of one aqua ligand has been determined by acid-base spectrophotometric titration as 6.7. This low pKa value is attributed to the formation of the highly stable (Ru2O2H3) entity. The UV-vis spectra for the different oxidation states of 3, from RuIIRuII to RuIIIRuIV, have been obtained by either chemical or electrochemical oxidation of the complex. UV-vis kinetic studies on the stepwise oxidation from RuII,II to RuIV,IV have been performed, and the individual second-order rate constants for the different oxidation processes determined. The capability of 3 in water oxidation to molecular dioxygen has been investigated in homogeneous solution using CeIV as oxidant. Oxygen evolution has been clearly demonstrated by gas chromatography. An efficiency of 73% and 18.6 metal cycles were obtained using 1.83 x 10-6 mols of dimer and 100-fold molar excess of cerium. This complex has also been shown to catalyze water oxidation in a heterogenous Nafion membrane, but the yields of O2 evolution are lower. An intramolecular pathway for the water oxidation process has been proposed. It involves the four-electron oxidation of the RuII,II dimer to the RuIV,IV complex that reverts to the RuII,II oxidation state upon releasing of molecular dioxygen. This model is consistent with kinetic studies on the evolution of oxygen as a function of catalyst and cerium concentrations, performed in homogeneous acidic solution, which show that the four-electron oxidation of water is catalyzed by one molecule of complex under large excesses of cerium. The pseudo-first-order rate constant for oxygen evolution has been calculated as 1.4 x 10-2 s-1, which is among the highest values reported up to date. Unfortunately, the diaqua dimer 3 is deactivated during the catalysis to yield an orange species which we are currently trying to characterize.
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Oxidation characteristics of fluorine-, nitrogen-, and sulfur-containing organic compounds by UV/O3

Chang, Ken-Lin 10 September 2007 (has links)
DMSO (dimethyl sulfoxide) is a liquid with a high boiling point (189 oC) that has been extensively utilized in various industries owing to its ability to dissolve various organic and inorganic compounds. DMSO is increasingly being adopted as a detergent or a photo-resistant stripping solvent in manufacturing semiconductors and liquid crystal displays (LCD). Therefore, DMSO is now a major component of wastewater. The biological treatment of DMSO-containing wastewater generates noxious DMS (dimethyl sulfide) and other compounds that may cause odor problems. Also having a high water solubility and a moderate boiling point (110 oC), tetrafluoro propanol (TFP) has been extensively applied in the manufacture of CD-R and DVD-R, due to its ability to dissolve organic dyes. The spin coating process produces a large amount of wastewater containing TFP. No reports have been written on the biodegradability of TFP to the authors¡¦ knowledge. Additionally, HMDS (hexamethyldisilazane) has been extensively used in life science microscopy and material science. For instance, the semiconductor industry employs HMDS to promote the adhesion of photo-resistant material to oxide(s). HMDS is classified as a carcinogen, and has an ammonia odor. Condensing incinerators have been found to be unsuitable for treating HMDS-containing waste gases, because of the formation of silicon dioxide, which blocks porous adsorbents. Biological treatment also appears to be unpromising due to its low water solubility and limited biodegradability. This investigation evaluates the feasibility, effectiveness and oxidation characteristics of aqueous DMSO, TFP and gaseous HMDS (hexamethyldisilazane) by UV/O3 processes. A reactor made entirely of acrylic plastic with an effective volume of 10 L was employed for the reactions. The tested VOCs concentrations were adjusted to 400¡V890mg/L and 772¡V887 mg/L for DMSO and TFP, respectively, and the gas (ozone-enriched air) flow rate was controlled at 3L/min. The effects of various solution pH values (acidic, alkaline, uncontrolled), solution temperatures (26 oC, 37 oC, 48 oC and 60 oC), and UV wavelengths (254 nm and 185+254 nm) on the removal of tested VOCs were studied . Additionally, the operation costs of treating DMSO and TFP by UV/O3 were estimated. Experimental results demonstrate that acidic conditions (pH = 3.6) favored the degradation of DMSO, and that the removal efficiency could reach 95% at a volumetric UV intensity P/V of 2.25 W/L and a reaction time of 120 min. However, alkaline conditions (pH = 9.5) favored the decomposition of TFP, with the removal efficiency reaching 95% at P/V = 2.5 W/L and a reaction time of 60 min. Both DMSO and TFP exhibited zero-order degradation kinetics when sufficient ozone was supplied. Raising the oxidation temperature did not increase the UV/O3 oxidation of TFP in the tested concentration and temperature ranges. Operation costs of the UV/O3 per unit volume of wastewater with DMSO or TFP are comparable to those of the methods described in the literature. For the gaseous HMDS oxidation, two batch reactors with effective volumes of 1.2 and 5.8 L were used employed with the decomposition occurred under UV (185+254 nm) irradiation and UV (254 nm)/O3 processes. Tests were performed with initial HMDS concentrations of 32¡V41mg/m3 under various initial ozone dosages (O3 (mg)/HMDS (mg) =1¡V5), atmospheres (N2, O2, and air), temperatures (28 oC, 46 oC, 65 oC and 80 oC), relative humilities (20%, 50%, 65% and 99%) and volumetric UV power inputs (0.87 W/L, 1.74 W/L, 4.07 W/L and 8.16 W/L) to assess their effects on the HMDS degradation rate. Results of this study demonstrate that the decomposition rates for the UV (185+254 nm) irradiation exceeded those for the UV (254 nm)/O3 process for all conditions. UV (185+254 nm) decompositions of HMDS displayed apparent first-order kinetics. A process with irradiation of UV (185+254 nm) to HMDS in air saturated with water at temperatures of 46¡V80 oC favors the HMDS degradation. With the above conditions and a P/V of around 8 W/L, k≈ 0.20 s−1, and over 90% of the initial HMDS was degraded in a time of 12s. The main mechanisms for the HMDS in wet air streams irradiated with UV (185+254 nm) were found to be caused by OH free radical oxidation produced from photolysis of water or O (1D) produced from photolysis of oxygen. Economic evaluation factors of UV (185+254 nm) and UV (254 nm)/O3 processes at various UV power inputs were also estimated.
50

Controlled release gel formulations and preclinical screening of drug candidates

Ur-Rehman, Tofeeq January 2011 (has links)
Simple gel formulations may be applied to enhance the systemic and local exposure of potential compounds. The aim of this thesis is the development and characterization of controlled release formulations based on thermo-reversible poloxamer gels, which are suitable for novel drug delivery applications.  In particular co-solvents (DMSO, ethanol), mucoadhesive polymers (chitosan, alginate) and salts (sodium tripolyphosphate, CaCl2) have been used to enhance the applications of poloxamer 407 (P407) formulations in preclinical animal studies. The impact of these additives on the micellization and gelation properties of P407 aqueous solutions was studied by calorimetric methods, nuclear magnetic resonance spectroscopy (NMR) and “tube inversion” experiments. The drug release behavior of hydrophobic and hydrophilic drugs was characterized by using a membrane/membrane-free experimental setup. Finally, preliminary pharmacokinetic studies using a mouse model were conducted for screening of selected inhibitors of bacterial type III secretion and for evaluation of different formulations including P407 gel. All additives, used here, reduced the CMTs (critical micelle temperature) of dilute P407 solutions, with the exception of ethanol. The gelation temperature of concentrated P407 solutions was lowered in the presence of CaCl2, DMSO, TPP and alginate. 1H MAS (Magic Angle Spinning) NMR studies revealed that DMSO influences the hydrophobicity of the PPO segment of P407 polymers. Low concentrations of DMSO did not show any major effect on the drug release from P407 gels and may be used to improve the exposure of lead compounds in poloxamer gels. A newly developed in situ ionotropic gelation of chitosan in combination with TPP in P407 gels showed an enhanced resistance to water and reduced the release rates of model drugs. From preliminary pharmacokinetic studies in mice it was revealed that poloxamer formulations resulted in an increased plasma half-life of the lead compound.

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