<p>Duchenne muscular dystrophy (DMD) is a severe hereditary disorder caused by a loss of dystrophin, an essential musculoskeletal protein. Decades of promising research have yielded only modest gains in survival and quality of life for these patients and there have been no approved gene therapies for DMD to date. There are two significant hurdles to creating effective gene therapies for DMD; it is difficult to deliver a replacement dystrophin gene due to its large size and current strategies to restore the native dystrophin gene likely require life-long administration of a gene-modifying drug. This thesis presents a novel method to address these challenges through restoring dystrophin expression by genetically correcting the native dystrophin gene using engineered nucleases that target one or more exons in a mutational hotspot in exons 45-55 of the dystrophin gene. Importantly, this hotspot mutational region collectively represents approximately 62% of all DMD mutations. In this work, we utilize various engineered nuclease platforms to create genetic modifications that can correct a variety of DMD patient mutations.</p><p>Initially, we demonstrate that genome editing can efficiently correct the dystrophin reading frame and restore protein expression by introducing micro-frameshifts in exon 51, which is adjacent to a hotspot mutational region in the dystrophin gene. Transcription activator-like effector nucleases (TALENs) were engineered to mediate highly efficient gene editing after introducing a single TALEN pair targeted to exon 51 of the dystrophin gene. This led to restoration of dystrophin protein expression in cells from DMD patients, including skeletal myoblasts and dermal fibroblasts that were reprogrammed to the myogenic lineage by MyoD. We show that our engineered TALENs have minimal cytotoxicity and exome sequencing of cells with targeted modifications of the dystrophin locus showed no TALEN-mediated off-target changes to the protein coding regions of the genome, as predicted by in silico target site analysis. </p><p>In an alternative approach, we capitalized on the recent advances in genome editing to generate permanent exclusion of exons by using zinc-finger nucleases (ZFNs) to selectively remove sequences important in specific exon recognition. This strategy has the advantage of creating predictable frame restoration and protein expression, although it relies on simultaneous nuclease activity to generate genomic deletions. ZFNs were designed to remove essential splicing sequences in exon 51 of the dystrophin gene and thereby exclude exon 51 from the resulting dystrophin transcript, a method that can potentially restore the dystrophin reading frame in up to 13% of DMD patients. Nucleases were assembled by extended modular assembly and context-dependent assembly methods and screened for activity in human cells. Selected ZFNs had moderate observable cytotoxicity and one ZFN showed off-target activity at two chromosomal loci. Two active ZFN pairs flanking the exon 51 splice acceptor site were transfected into DMD patient cells and a clonal population was isolated with this region deleted from the genome. Deletion of the genomic sequence containing the splice acceptor resulted in the loss of exon 51 from the dystrophin mRNA transcript and restoration of dystrophin expression in vitro. Furthermore, transplantation of corrected cells into the hind limb of immunodeficient mice resulted in efficient human dystrophin expression localized to the sarcolemma. </p><p>Finally, we exploited the increased versatility, efficiency, and multiplexing capabilities of the CRISPR/Cas9 system to enable a variety of otherwise challenging gene correction strategies for DMD. Single or multiplexed sgRNAs were designed to restore the dystrophin reading frame by targeting the mutational hotspot at exons 45-55 and introducing either intraexonic small insertions and deletions, or large deletions of one or more exons. Significantly, we generated a large deletion of 336 kb across the entire exon 45-55 region that is applicable to correction of approximately 62% of DMD patient mutations. We show that, for selected sgRNAs, CRISPR/Cas9 gene editing displays minimal cytotoxicity and limited aberrant mutagenesis at off-target chromosomal loci. Following treatment with Cas9 nuclease and one or more sgRNAs, dystrophin expression was restored in Duchenne patient muscle cells in vitro. Human dystrophin was detected in vivo following transplantation of genetically corrected patient cells into immunodeficient mice. </p><p>In summary, the objective of this work was to develop methods to genetically correct the native dystrophin as a potential therapy for DMD. These studies integrate the rapid advances in gene editing technologies to create targeted frameshifts that restore the dystrophin gene around patient mutations in non-essential coding regions. Collectively, this thesis presents several gene editing methods that can correct patient mutations by modification of specific exons or by deletion of one or more exons that results in restoration of the dystrophin reading frame. Importantly, the gene correction methods described here are compatible with leading cell-based therapies and in vivo gene delivery strategies for DMD, providing an avenue towards a cure for this devastating disease.</p> / Dissertation

Duchenne muscular dystrophy (DMD) is a fatal, muscle-wasting disorder due to mutations/deletions in the dystrophin gene. Whilst improvements in palliative care have increased the life expectancy of patients, cardiomyopathy and respiratory complications are still the leading causes of death. A potential therapy for the treatment of DMD is antisense oligonucleotides (AOs), which modulate dystrophin pre-mRNA splicing to restore the dystrophin reading frame and generate a truncated functional protein. Conjugation of AOs to cell penetrating peptides (CPP), such as Pip5e-, significantly improves delivery to skeletal muscles and to the heart, which is imperative given the impact of cardiomyopathy to mortality. However, it should be noted that the contribution of skeletal muscles, such as the core respiratory muscle, the diaphragm, in dystrophic cardiopulmonary function is poorly understood. The specific aims of the work in this thesis were to (i) understand the effect of the diaphragm on cardiac function using magnetic resonance imaging (MRI), (ii) screen a number of derivatives of Pip5e (Pip6) in an effort to discover further promising peptides and define the properties integral to heart penetrating capacity, and (iii) assess whether Pip6-PMOs restore cardiac function (MRI) following a repeat, low dose regimen. In short, the specific restoration of dystrophin in the diaphragm of the dystrophic mouse model, the mdx mouse, did not improve cardiac function, highlighting the importance of a body-wide therapy. The screening of multiple Pip5e-PMO derivatives revealed 3 promising peptides with improved cardiac splicing capacity; however, serial deletions of amino acids from the central core resulted in the diminution of dystrophin restoration, possibly due to a reduction in hydrophobicity. Finally, the Pip6-PMO treatment regimen substantially restored dystrophin protein (28% in heart) and stabilised cardiac function, even with an increased work load. In conclusion, this study illustrates the importance of a body-wide treatment, such as the CPP strategy (Pip-PMO). These Pip-PMO conjugates demonstrate high dystrophin restoration in a number of muscles, including cardiac muscle, and have a beneficial effect on cardiac function.

Thèse numérisée par la Direction des bibliothèques de l'Université de Montréal.

Background: Duchenne and Becker muscular dystrophies, collectively referred to as dystrophinopathies, are recessive X-linked disorders characterized by progressive muscle weakness and ultimately cardiac and respiratory failure. Immediate family members are often primary caregivers of individuals with a dystrophinopathy. Methods: We explored the impact of this role by inviting primary caregivers (n = 209) of males diagnosed with childhood-onset dystrophinopathy who were identified by the Muscular Dystrophy Surveillance, Tracking, and Research Network (MD STARnet) to complete a mailed questionnaire measuring perceived social support and stress, spirituality, and family quality of life (FQoL). Bivariate and multivariate analyses examined associations between study variables using the Double ABCX model as an analytic framework. Results: Higher stressor pile-up was associated with lower perceived social support (r = -0.29, p <.001), availability of supportive family (r = -0.30, p <.001) or non-family (r = -0.19, p <.01) relationships, and higher perceived stress (r = 0.33, p <.001); but not with spirituality (r = -0.14, p > 0.05). FQoL was positively associated with all support measures (correlations ranged from: 0.25 to 0.58, p-values 0.01-0.001) and negatively associated with perceived stress and control (r = -0.49, p <.001). The association between stressor pile-up and FQoL was completely mediated through global perceived social support, supportive family relationships, and perceived stress and control; supportive non-family relationships did not remain statistically significant after controlling for other mediators. Conclusions: Findings suggest caregiver adaptation to a dystrophinopathy diagnosis can be optimized by increased perceived control, supporting family resources, and creation of a healthy family identity. Our findings will help identify areas for family intervention and guide clinicians in identifying resources that minimize stress and maximize family adaptation.

Introdução: Distrofia muscular progressiva nas formas de Duchenne (DMD) e Becker (DMB) são doenças caracterizadas por progressiva degeneração musculoesquelética e substituição por tecido fibrogorduroso. O envolvimento cardíaco está presente em 80% dos pacientes, apresenta curso clínico silencioso e é diagnosticado tardiamente pelos métodos tradicionais. Objetivos: 1. Investigar a progressão da fibrose miocárdica pela ressonância magnética cardíaca (RMC), em ensaio clínico randomizado para tratamento ou não com IECA, de pacientes com DMD e DMB e fração de ejeção ventricular esquerda (FEVE) preservada, por um período de 02 anos. 2. Investigar se há mutações genéticas específicas que sejam preditoras do acometimento miocárdico diagnosticado pela RMC. 3. Comparar os achados do ECG, radiografia de tórax e ecocardiograma com os da RMC. Métodos: Entre 1/6/2009 e 1/6/2012 foram incluídos 76 pacientes com diagnóstico de DMD e DMB. Todos os pacientes realizaram duas RMCs com intervalo médio de 2,05±0,11 anos, com técnicas de cine ressonância para avaliação da função ventricular e realce tardio miocárdico para avaliação da fibrose miocárdica. A fibrose miocárdica foi quantificada por software específico para obtenção do percentual da massa de fibrose do VE com análise semi automática, utilizando os desvios padrões da média dos valores de intensidade do sinal do miocárdio normal. Os valores acima de 5 desvios padrões da média do miocárdio normal foram considerados como fibrose miocárdica. Os 42 pacientes com fibrose miocárdica e FEVE normal foram randomizado em 2 grupos, com 21 deles recebendo tratamento com IECA e 21 sem qualquer tratamento para cardiomiopatia. Após 2 anos, novas RMCs foram realizadas para avaliar a evolução da fibrose e a FEVE. Resultados: Notou-se fibrose miocárdica em 72,3% dos pacientes, sendo que 55,6 % não apresentavam disfunção sistólica. Verificou-se uma correlação positiva significativa entre idade e percentual de fibrose na RMC basal (r=0,338, p=0,014) e seguimento (r=0,315, p=0,006). Os pacientes randomizados e tratados com IECA apresentaram menor evolução do percentual de fibrose do que os randomizados não tratados (3,1±7,4% versus 10,0±6,2% respectivamente, p=0,001). Na análise linear multivariada, verificamos que pertencer ao grupo tratado diminui a progressão do percentual de fibrose (y=-4,51x+29,63 ajustado por idade, CK e percentual de fibrose basal, p=0,039) e indica uma tendência de menor probabilidade de apresentar fração de ejeção do VE < 50% na RMC seguimento (OR= 3,18, p= 0,102, por regressão logística). Os pacientes com mutação nos exons menores que 45 do gene da distrofina apresentaram maior percentual de fibrose que os com mutação dos exons maiores ou iguais ao 45 na RMC basal (27,9±18,4% versus 12,1±13,4%, respectivamente, p=0,006) e seguimento (33,1±21,1% versus 18,8±16,9%, respectivamente, p=0,024). A avaliação conjunta por métodos tradicionais (radiografia de tórax, ECG e ecocardiografia) apresentou baixa sensibilidade de 47,3% e valor preditivo negativo de 34,1% para o diagnóstico do envolvimento cardíaco na DMD e DMB, em pacientes com FEVE normal e fibrose miocárdica na RMC. Conclusões: O ensaio clínico randomizado, por um período de 2 anos, em pacientes com DMD e DMB, com fibrose miocárdica diagnosticada pela RMC e FEVE preservada, demonstrou significativa maior progressão da fibrose miocárdica nos pacientes que não fizerem uso de IECA. Existe uma correlação significativa entre o local de mutação no gene da distrofina e o acometimento cardíaco. O ECG, o eco e radiografia de tórax apresentaram baixa sensibilidade e baixo valor preditivo negativo para detecção do envolvimento cardíaco precoce nos pacientes com DMD e DMB / Introduction: Duchenne and Becker muscular dystrophies (DMD and BMD) are diseases characterized by progressive skeletal muscle degeneration and replacement by fibro fatty tissue. Cardiac involvement is frequent, as high as 70 - 80% of patients, and often develops clinically silent, without any evident early clinical signs. Traditional diagnostic methods (ECG, chest x-ray and echocardiography) are only able to diagnose cardiac involvement at a later stage. Objectives: 1. To investigate the progression of myocardial fibrosis by cardiac magnetic resonance (CMR), in a randomized clinical trial for treatment with ACE inhibitors, in patients with DMD or BMD and preserved left ventricular ejection fraction (LVEF), for a period of 02 years. 2. To investigate whether there are specific genetic mutations that are predictive of myocardial involvement detected by CMR. 3. To compare the findings of ECG, chest radiography and echocardiography with those found by CMR. Methods: Between 01/06/2009 and 01/06/2012 76 patients with DMD and BMD were included. All patients underwent two CMRs with a mean interval of 2.05±0.11 years, using cine resonance for function evaluation and myocardial delayed enhancement technique for myocardial fibrosis detection. Myocardial fibrosis was quantified by specific software for obtaining fibrosis mass, as percentage of LV mass, using semi-automatic fibrosis analysis and standard deviations of the mean values of signal intensity of the normal myocardium. A value of five standard deviations above the mean of a normal myocardium were considered myocardial fibrosis. The 42 patients with myocardial fibrosis and normal LVEF were randomized into 2 groups, with 21 of them receiving ACE inhibitor treatment and 21 no treatment for cardiomyopathy. After 2 years, new CMRs were performed to evaluate fibrosis extent and LVEF. Results: Myocardial fibrosis was noted in 72.3% of the patients, 55.6% showed no systolic dysfunction. There was a significant positive correlation between age and myocardial fibrosis at the CMR baseline (r=0.338, p=0.014) and follow-up (r=0.315, p=0.006). Patients randomized and treated with ACE inhibitors had lower evolution of myocardial fibrosis than those who were randomized and untreated (3.1±7.4% vs.10.0±6.2%, respectively, p=0.001). Using multivariate regression analysis, we found that belonging to the treated group decreases the progression of myocardial fibrosis (y=-4.51x+29.63 adjusted for age, CK and baseline myocardial fibrosis, p=0.039) and indicated a trend for lower probability of presenting LVEF<50% at follow-up CMR (OR= 3.18, p= 0.102, by logistic regression). Patients with mutations in exons less than 45 had greater extent of myocardial fibrosis than patients with mutations in exons greater than or equal to 45 in CMR at baseline (27.9±18.4% vs. 12.1±13.4%, respectively, p=0.006) and at follow-up (33.1±21.1% vs. 18.8±16.9%, respectively, p=0.024). Conclusions: In this 2-year follow-up randomized clinical trial in patients with DMD and BMD with preserved LVEF, myocardial fibrosis diagnosed by CMR, showed significantly greater progression in patients not receiving ACE inhibitors therapy. There was a significant correlation between the site of mutation in the dystrophin gene and cardiac involvement. ECG, echocardiography and chest radiography showed low sensitivity and low negative predictive value for early detection of cardiac involvement (myocardial fibrosis by CMR) in patients with DMD and BMD

Duchenne Muscular Dystrophy (DMD) is an X-linked recessive neuromuscular disease characterized by progressive muscle-wasting and loss of mobility. One-third of patients with DMD are also affected by cognitive impairments such as a lower than average IQ and impaired working memory, comorbid with neuropsychiatric disorders such as anxiety and autism-related behaviours. DMD is caused by mutations in the DMD gene resulting in the deletion of the full-length dystrophin protein (Dp427) and, dependent on mutation, other dystrophin isoforms. These isoforms are predominantly found in the brain and deletion may impact on cognition. The most commonly used animal model to study DMD is the mdx mouse which completely lacks Dp427 but no other DMD isoforms. Although the muscle phenotype is well-established, behavioural characterization of the mdx mouse model has been inconclusive. In this thesis I investigated the hippocampal and amygdala cellular and behavioural phenotypes of the mdx mouse. I show that post-natal neural stem-like cell division in the SGZ is altered in the absence of Dp427 resulting in enhanced symmetric division. I show in vitro that primary mdx cultures are fewer and smaller than wild-type, consistent with an increase in symmetrical self-renewal whereas secondary cultures are fewer and larger, consistent with a shift in symmetric division producing transit-amplifying type 2a daughter cells. I next characterized the mdx mouse model using a battery of behavioural tests. Data presented here show that mdx mice do not exhibit an anxious phenotype, do not display autism-related behaviours, and do not display impairments in and spatial learning or memory. However, associative learning, as measured in the fear conditioning paradigm is enhanced in mdx mice. Lastly, I attempted to generate three different brain-specific dystrophin knock-out mouse models to examine role of other dystrophin isoforms. While none of the models were able to deplete dystrophin from brain, given the inverse relationship between Cre-mediated efficiency and the genetic distance of the loxP sites in the fDMDH mouse employed, I do provide important insight into the presence and absence of the muscle-specific enhancers in constructs commonly used to generate brain-specific mouse models. Taken together, this thesis provides converging evidence to indicate that loss of Dp427 impacts on fear associative learning and stem-cell like division in the SGZ but likely does not underlie the non-progressive cognitive impairments affecting one-third of all DMD patients.

The mdx mouse is widely used as a model for Duchenne Muscular Dystrophy, a fatal X-linked disease caused by a deficiency of the sub-sarcolemmal protein, dystrophin. This dissertation reports characterisation of the features of dystrophy in the mdx mouse, including parameters such as electrophysiological and contractile properties of dystrophic cardiac tissue, quantitative evaluation of kyphosis throughout the mdx lifespan, and contractile properties of respiratory and paraspinal muscles. Following these characterisation studies, the efficacy of antisense oligonucleotides (AOs) to induce alternative mRNA splicing in mdx skeletal muscles (diaphragm and paraspinal muscles) was evaluated. The left atria of younger (<6 weeks) and older (>15 months) mdx mice showed consistently lower basal forces and responsiveness to increased calcium, while action potential duration was significantly shorter in young mice (3 weeks) and older mice (9 and 12 months) (P<0.05). Cardiac fibrosis increased with age in mdx atria and ventricles and was elevated in young (6-8 weeks) and old (15 months) mdx compared to control mice (P<0.01). This study provided insights into DMD cardiomyopathy, and suggested that very young or old mdx mice provide the most useful models. Mdx mice show thoracolumbar kyphosis like boys with Duchenne Muscular Dystrophy. A novel radiographic index, the Kyphotic Index (KI), was developed and showed that mdx mice are significantly more kyphotic from 9 months of age, an effect maintained until 17 months (P<0.05). At 17 months, the paraspinal and respiratory muscles (latissimus dorsi, diaphragm and intercostal muscles) are significantly weaker and more fibrotic (P<0.05). Administration of AOs at four sites within the diaphragm at 4 and 5 months of age significantly increased twitch and tetanic forces compared to sham treated mdx (P<0.05). However, no difference in collagen was evident and dystrophin was not detected, possibly due to the low concentration of AO utilised. This study suggested that AOs can provide functional improvement in treated skeletal muscles. Monthly injections with AOs into the paraspinal muscles from 2 months to 18 months of age alleviated kyphosis, without significantly altering twitch and tetanic forces of latissimus dorsi, diaphragm and intercostal muscles. There was evidence of less fibrosis in diaphragm and latissimus dorsi muscles (P<0.05) and reduced central nucleation of the latissimus dorsi and intercostal muscles (P<0.05). Again, dystrophin was not detected by immunoblot. These studies indicate that very young and old mdx mice display previously uncharacterised dystrophic features, and are useful models for testing new therapies such as AOs. Low doses of AOs were shown to be safe and efficacious for long-term use, however there remains a need for testing higher concentrations and improved delivery strategies.

La dystrophie musculaire de Duchenne (DMD) est la maladie neuromusculaire la plus fréquente de l'enfant. Son évolution progressive inexorable conduit habituellement au décès dans la troisième décade. La DMD constitue cependant une affection hétérogène pour la sévérité de l'atteinte musculaire, cognitive et cardiaque, et cette hétérogénéité n'est pas totalement expliquée par la localisation des mutations dans le gène de la dystrophine. Ma thèse comporte trois volets: (1) une analyse clinique multivariée d'une cohorte de DMD suivie à long terme qui nous a permis de définir 4 phénotypes distincts de DMD; (2) une étude de corrélation clinico-pathologique qui a identifié la fibrose endomysiale précoce comme seul facteur histologique prédictif de sévérité motrice; (3) la mise au point d'un modèle murin original de myofibrose dystrophique chez la souris mdx déficiente en dystrophine. 1- Étude multiparamétrique clinique. La saisie par la même équipe des données fonctionnelles musculaires, cardiaques, respiratoires et cognitives de 75 patients atteints de DMD (tous génotypés et présentant une absence complète de dystrophine musculaire), suivis pendant >10 ans, a permis d'établir un modèle multiparamétrique satisfaisant à deux dimensions principales, cognitive et motrice, et de définir 4 clusters phénotypiques : (i) DMD cognitive et motrice congénitale (20%), (ii) DMD classique (28%), (iii) DMD motrice pure modérée (22%), (iv) DMD motrice pure sévère (30%). La corrélation génotypephénotype était restreinte à la seule atteinte cognitive. Des indicateurs pronostics précoce ont été identifiés et validés sur une 2ème série de 34 patients. 2- Étude histopathologique. Les variations de sévérité de l'atteinte musculaire n'étant pas expliquées par la génétique moléculaire, nous avons cherché à corréler les paramètres moteurs et la biopsie musculaire prélevée dans le quadriceps à un stade précoce (3-7 ans) chez 25 patients (analyse stéréologique des images numérisées pour les paramètres élémentaires: nécrose/régénération, fibres hypercontractées, adipocytes, fibrose endomysiale et périmysiale). Seule la fibrose endomysiale était associée à un pronostic moteur défavorable (p<0.002) attesté par l'âge de perte de marche, la force du quadriceps et le testing musculaire global à 10 ans. Cette fibrose endomysiale dissociait les capillaires des myofibres (écartement x 2.5), et s'accompagnait d'une augmentation sélective des macrophages CD206+ activés dans la voie alterne (M2) et d'une diminution relative des cellules satellites musculaires (p<0.0001). Ces données suggèrent un rôle clé de la fibrose endomysiale (et des macrophages M2 profibrosant) et dans la sévérité clinique de la DMD. 3- Étude expérimentale. Ces éléments rendent nécessaire la mise au point d'un modèle expérimental de myofibrose dystrophique, la souris mdx présentant peu de fibrose et un déficit moteur modéré et tardif. Nous avons mis au point une nouvelle méthode de lésion musculaire focale profibrosante du tibialis antérieur chez la souris mdx (piqûres multiples quotidiennes pendant 15 jours). Une fibrose endomysiale attestée par un fort immunomarquage du collagène I (à 8, 30, 60 et 90 jours) a été quantifiée et corrélée à la perte de la force musculaire dans la patte lésée (comparée au muscle contralatéral). Ces résultats légitiment et préparent les futures stratégies thérapeutiques "anti-fibrosantes" dans la DMD

Thesis (Ph. D.)--Ohio State University, 2006. / Title from first page of PDF file. Includes bibliographical references (p. 147-163).

名古屋大学博士学位論文 学位の種類 : 博士(医学)(論文) 学位授与年月日:平成5年2月19日 竹中晃氏の博士論文として提出された