The focus of this study was analytical investigations of Egyptian paintings, mainly Coptic icons and Islamic wooden ceilings, dating from 1300-1900 using multiinstrumental techniques. Twenty three Coptic icons and three wooden ceilings dated from different periods and painted by different painters in case of icons were examined. The materials used including pigments, media, varnishes, ground layers and gold layers. The surface stratigraphy of paint samples, their layered structured and the composition of materials used in each layer were analysed. Variations in painting techniques, pigments palettes, paint media and varnishes applied in Egyptian paintings according to painters, time and type of paintings were revealed. A total of twenty-eight organic and inorganic pigments were identified in this study, of which nine have never been previously included as a part of the Egyptian pigment palettes, namely; smalt, lapis lazuli, indigo, pararealgar, Prussian blue, chrome yellow, barium yellow, barium white and hydromagnesite. The identification of hydromagnesite, which has never been to date considered as a pigment either in Egypt or elsewhere and the identification of smalt from the mid-14th century, whose reported earliest large scale use was in the 16th century. Two types of resins were identified as a constituent of the oil/resin varnish applied on Coptic icons of which Venice turpentine has been identified for the first time as an ingredient of Egyptian varnishes. The identification of mosaic gold in an 18th C. icon, a novel usage of dammar resin and the multilayered structure of the white ground layers were revealed. / Egyptian Ministry of Higher Educations

This thesis describes the development and use of a computer-automated microscopy routine for characterization of respirable dust particles from coal mines. Respirable dust in underground coal mining environments has long been known to pose an occupational health hazard for miners. Typically following years of exposure, coal workers' pneumoconiosis (CWP) and silicosis are the most common disease diagnoses. Although dramatic reductions in CWP and silicosis cases were achieved across the US between about 1970-1999 through a combination of regulatory dust exposure limits, improved ventilation and dust abatement practices, a resurgence in disease incidence has been noted more recently – particularly in parts of Appalachia. To shed light on this alarming trend and allow for better understanding of the role of respirable dust in development of disease, more must be learned about the specific characteristics of dust particles and occupational exposures. This work first sought to develop an automated routine for the characterization of respirable dust using scanning electron microscopy with energy dispersive x-ray (SEM-EDX). SEM-EDX is a powerful tool that allows determination of the size, shape, and chemistry of individual particles, but manual operation of the instrument is very time consuming and has the potential to introduce user bias. The automated method developed here provides for much more efficient analysis – with a data capture rate that is typically 25 times faster than that of the manual method on which it was based – and also eliminates bias between users. Moreover, due to its efficiency and broader coverage of a dust sample, it allows for characterization of a larger and more representative number of particles per sample. The routine was verified using respirable dust samples generated from known materials commonly observed in underground coal mines in the central Appalachian region, as well as field samples collected in this region. This effort demonstrated that particles between about 1-9μm were accurately classified with respect to defined chemical categories, and suggested that analysis of 500 particles across a large area of a sample filter generally provides representative results. The automated SEM-EDX routine was then used to characterize a total of 210 respirable dust samples collected in eight Appalachian coal mines. The mines were located in three distinct regions (i.e., northern, mid-central and south-central Appalachia), which differed in terms of primary mining method, coal seam thickness and mining height, and coal and/or rock mineralogy. Results were analyzed to determine whether number distributions of particle size, aspect ratio, and chemistry classification vary between and within distinct mine regions, and by general sampling location categories (i.e., intake, feeder, production, return). Key findings include: 1) Northern Appalachian mines have relatively higher fractions of coal, carbonate, and heavy mineral particles than the two central Appalachian regions, whereas central Appalachian mines have higher fractions of quartz and alumino-silicate particles. 2) Central Appalachian mines tended to have more mine-to-mine variations in size, shape, and chemistry distributions than northern Appalachian mines. 3) With respect to particle size, samples collected in locations in the production and return categories have the highest percentages of very small particles (i.e., 0.94-2.0μm), followed by the feeder and then the intake locations. 4) With respect to particle shape, samples collected in locations in the production and return categories have higher fractions of particles with moderate (i.e., length is 1.5 to 3x width) to relatively high aspect ratios (i.e., length is greater than 3x width) compared to feeder and intake samples. 5) Samples with relatively high fractions of alumino-silicates have higher fractions of particles with moderate aspect ratios than samples with low alumino-silicate fractions. 6) Samples with relatively high fractions of quartz particles have higher fractions of particles with moderate aspect ratios and higher percentages of very small particles than samples with no identified quartz particles. 7) Samples with high fractions of carbonates have higher percentages of particles with relatively low aspect ratios (i.e., length and width are similar) than samples with no identified carbonate particles. / Master of Science

Cette étude a pour objet d’apporter des éléments de compréhension quant à l’amélioration de la résistance à la corrosion des alliages de ZnMg(Al), en comparaison du Zn, en milieu atmosphérique chloré. Le cheminement de réflexion part de considérations fondamentales et tend vers des conditions réelles d’utilisation. La première étape a consisté à synthétiser et caractériser des films de ZnO dopé Mg et notamment l’évolution de la structure cristalline, la structure électronique, la résistivité, (…) avec le dopage. La pertinence de ces paramètres a ensuite été évaluée et discutée au regard de la stabilité de ces films en solution. Dans un second temps, les produits de corrosion formés, en laboratoire, en présence ou non de chlorures, sur des phases pures de Zn et ZnMg, ont été caractérisés. Les processus physico-chimiques liés à la formation de ces produits ont ensuite été discutés, afin de mettre en lumière le rôle du Mg dans l’amélioration de la résistance à la corrosion. La dernière étape, s’est attachée à caractériser des produits de corrosion formés après 6 mois en milieu naturel, en atmosphère marine, sur des phases pures de Zn et ZnMg, et des revêtements industriel de type ZnMgAl. Les résultats obtenus ont permis de mettre en évidence une meilleure stabilité en solution des films de Zn0.84Mg0.16O en comparaison du ZnO, en corrélation avec une présence accrue de liaisons hydroxyles, une augmentation de la résistivité et de la fonction de travail. Ces trois paramètres sont apparus également pertinents, sur les produits de corrosion formés en laboratoire et naturellement en présence de Mg et de Mg, Al, et corrélés à l’amélioration de la résistance à la corrosion. / The aim of this study was to provide some understanding about the improvement of the corrosion resistance of ZnMg and ZnMgAl alloys in comparison to Zn, in chloride content atmospheric environment, from fundamental considerations gradually towards the actual use of these materials. The first approach consisted in the synthesis and physicochemical characterization of films of magnesium doped zinc oxide and particularly the evolution of parameters such as the crystal structure, the electronic structure (band gap), the resistivity, (…) with doping. The relevance of these parameters was then evaluated and discussed regarding to the stability of these films in a solution of pH 8.4. The second stage focused on the characterization of corrosion products formed in the laboratory with or without chloride, on pure Zn and ZnMg. The physico-chemical processes related to the formation of these products were then discussed to highlight the role of Mg in the improvement of the corrosion resistance of ZnMg alloys in comparison with the Zn. The third and final stage consisted in the characterization of corrosion products formed in marine atmosphere on pure Zn and ZnMg, as well as on industrial coating-type ZnMgAl, after 6 months of exposure. The results obtained in this study showed a better stability in solution of solid solution films of Zn0.84Mg0.16O in comparison with the ZnO, correlated with the increase of hydroxyl bonds, associated with an increase of resistivity and work function. These three parameters appeared also relevant regarding the corrosion products formed naturally in the laboratory and in the presence of Mg and Mg-Al, and correlated with improvement of the corrosion resistance.

Le platine (Pt), le palladium (Pd) et le rhodium (Rh), font partie des Eléments du Groupe du Platine (EGP), utilisés dans les catalyseurs automobiles. En raison de leur émission dans l'environnement, ces éléments peuvent aujourd'hui être considérés comme des contaminants émergeants et traceurs de la contamination automobile. Cette étude porte sur la dispersion des EGP depuis leur source (monolithes et émission à l'échappement) jusqu'au champ proche (atmosphère, poussières de chaussées, eaux de ruissellement, sédiment,sol de bord de route). Leur mobilité à partir de monolithes a été étudiée en présence d'eau de ruissellement et de molécules organiques. Leur spéciation a été évaluée dans les poussières de chaussées et les sédiments. Les teneurs en EGP dans les monolithes étudiés montrent le remplacement de Pt par Pd dans les catalyseurs récents. L'abondance relative des EGP dans les échantillons environnementaux est Pd > Pt > Rh. Les expérimentations de mobilisation montrent que la mobilisation des EGP est plus significative au contact des molécules organiques, est dépendante du pH de la solution et augmente avec l'âge du monolithe. Rh est l'élément le plus mobilisable dans les monolithes. La spéciation montre que les EGP sont peu mobiles. Dans la part mobilisable, ils sont majoritairement liés à la fraction dite organique. / Platinum (Pt), palladium (Pd) and rhodium (Rh) (platinum-group elements; PGEs),are used in automotive catalytic converters to remove harmful emissions from exhaust gas. Nevertheless, nowadays, the PGEs are emerging as new environmental emission contaminators due to their increasing use. The goal of this research is to study the distribution of PGEs from the source (i.e. automotive catalytic converters and exhaust gas) to the environmental samples (i.e. atmospheric particles, road dust,storm water, pond sediments, and road-side soil). The mobility of PGEs from the converters in contact with run off water and natural complexing agents were studied. Also, the speciation of PGEs was investigated in road dust and pond sediments. Comparison of PGE contents in different catalysts confirms the replacement of Pt by Pd in more recent converters. Besides, the relative abundance of PGEs in environmental samples shows higher concentration of Pd compared toPt and Rh (i.e. Pd>Pt>Rh). The results of testing PGEs mobilization in catalytic converters demonstrate more significant mobilization by organic molecules as compared to run off water. Our results also show the dependency of PGEs mobilization on pH and on catalyst age. Among the PGEs, Rh was the most mobilized element in catalytic converters. More importantly, the speciation test shows that while PGEs are low mobile elements, in the mobilizable fraction, PGEs are in the organic fraction.

Ziel ist die räumliche Abbildung biologischer Materialien (Knochen, Kollagenfibrillen und Zähne) hinsichtlich deren Struktur auf der Nanometerskala mit Hilfe der Nanotomographie. Die Nanotomographie ist eine moderne dreidimensionale Volumenabbildungsmethode auf der Nanometerskala basierend auf der Rasterkraftmikroskopie. Für die Nanotomographie wurden Ätzprotokolle an Zähnen, Kollagenfibrillen und Knochen entwickelt, die einen gleichmäßigen Abtrag bewirken. Lineare Verschiebungen der aufgenommenen Schichten werden mit Hilfe der manuellen Registrierung korrigiert und zu einem Volumenbild rekonstruiert. Ein zentrales Ergebnis sind dabei erste hochaufgelöste Volumenbilder einzelner Kollagenfibrillen im nativen Knochen. Neben der konventionellen Nanotomographie wird ein Ansatz zur automatisierten Nanotomographie mit einer Auflösung von 10 nm am Beispiel des menschlichen Knochens und Zahnes demonstriert. Mit Hilfe von mikroskopischen und elektronenmikroskopischen Techniken wurden die verschiedenen Strukturebenen des humanen Zahn und Knochens abgebildet und die räumlichen Strukturen der TM-AFM-Bilder auf der Mikro- und Nanometerskala eingeordnet. Darüber hinaus konnte mit Hilfe analytischer Messmethoden die chemische Zusammensetzung des kortikalen nativen Knochens erfasst werden und Änderungen durch das Ätzen detektiert werden.

The diploma thesis deals with the treatment of polycaprolactone (PCL) nanofibers. PCL fibers were subjected to the deposition of plasma amine polymers in a low pressure pulsed radiofrequency capacitively coupled discharge using cyclopropylamine monomer (CPA). Collagen as an extracellular matrix (ECM) protein was immobilized and cell proliferation on the modified nanofiber surface was monitored. Untreated PCL fibers were also subjected to the deposition of an antibacterial copper layer, and the fibers were characterized by scanning electron microscopy (SEM), X-ray photoelectron spectroscopy (XPS), and energy dispersive spectroscopy (EDX).

No description available.

Nanomaterials display interesting physical and chemical properties depending on their shape, size and composition. Self assembly is an intriguing route to producing nanomaterials with controllable compositions and morphologies. DNA has been used to guide the self assembly of materials, resulting in: (1) metal nanowires; (2) metal or semiconductor nanorods; (3) carbon nanotubes; and (4) semiconductor, metal or biological nanoparticles. My work expands the range of DNA templated nanomaterials and develops novel ways of using DNA to pattern nanostructures on surfaces. I have performed the first synthesis of silver nanorods on single stranded DNA, an attractive material for localizing DNA coupled nanostructures through hybridization. I have demonstrated an ionic surface masking protocol to reduce ~70% of non specific metal deposition (a pervasive problem) during electroless plating of DNA with silver or copper. I have designed and constructed discrete three branched DNA junctions as scaffolding for self assembling three terminal, individually gateable nanotransistors. I have labeled these DNA structures with single streptavidin molecules, as a model for the placement of semiconductor nanocrystals at the junctions. Moreover, I have shown selective silver and copper plating of branched DNA constructs, with crystallinity that depends on plating conditions. I have fabricated DNA templated nickel nanostructures on surfaces and demonstrated their reversible interaction with a histidine labeled protein, as a model system for patterning histidine tagged nanostructures on surfaces. Previous methods were limited to decorating DNA scaffolds using streptavidin-biotin interactions. Finally, I have developed DNA shadow nanolithography, which uses angled thin film deposition and anisotropic etching to transfer patterns of surface aligned DNA onto substrates as nanoscale trenches with linewidths <30 nm. Nanotrenches can be post processed with microfabrication methods to modify their properties; I have constructed metal lines and nanopores from such trenches. This dissertation summarizes the principles and methods for synthesis and characterization of DNA templated nanomaterials. These biologically templated constructs may be useful in the fabrication of self assembled chemical and electrical sensors, and as structural materials for nanofabrication and nanopatterning on surfaces.

Projet I : Les endospores représentent un état de dormance des bactéries leur permettant de résister à des conditions extrêmes et de persister pendant des années. La formation d'endospores a façonné l'évolution puisqu’elle se produit exclusivement chez les Firmicutes. Plusieurs études ont rapporté la formation d'endospores chez des espèces en dehors des Firmicutes, en particulier chez deux espèces de Protéobactéries, Rhodobacter johrii et Serratia marscescens, et une espèce d'Actinobacteries, Mycobacterium marinum. Le fait d’identifier les endospores en dehors des Firmicutes pourrait affecter la forme de l'arbre de vie et aiderait dans notre lutte contre les agents pathogènes humains. Par conséquent, nous avons visé d’étudier l'endosporulation chez ces trois espèces en utilisant des approches avancées d'imagerie et d'analyse, y compris la microscopie corrélative alliant la microscopie optique et électronique (CLEM), la tomographie de cryo- électron (cryo-ET) et la lipidomique. Nous avons utilisé la bactérie sporulante bien caractérisée Bacillus subtilis comme contrôle positif de la sporulation. L'examen de R. johrii, S. marcescens et M. marinum en utilisant CLEM et cryo-ET a montré que les objets à phase brillante ne ressemblaient à aucun stade de l'endosporulation. Les cryo-tomogrammes ont montré que les objets à phase brillante chez S. marcescens étaient des débris cellulaires agrégés de cellules mortes, alors qu'ils présentaient des structures granulaires typiques des cellules bactériennes chez les R. johrii et M. marinum. L'analyse lipidomique chez R. johrii a identifié les structures granulaires comme des granules de stockage potentiels enrichis en triacylglycérides (TAG). Nous pensons que les TAG peuvent fournir une source d'énergie pour résister à l'épuisement des nutriments. Des approches biochimiques et bioinformatiques supplémentaires ont soutenu nos conclusions selon lesquelles R. johrii, S. marcescens et M. marinum sont des bactéries non sporulantes. Projet II : Les plasmides jouent un rôle vital dans la propagation des gènes de résistance au sein et entre les espèces bactériennes. Par conséquent, il est essentiel de comprendre les systèmes bactériens impliqués dans le transfert et la maintenance des plasmides pour mieux aider dans notre lutte contre la propagation de la résistance aux antibiotiques. Dans cette thèse de doctorat, nous avons cherché à caractériser l'opéron alp7ARC, en utilisant l'homologue de l'actine bactérienne Alp7A pour séparer le plasmide pLS20 codant pour la résistance à la tétracycline dans B. subtilis. La stabilité du plasmide s'est avérée dépendante de l'opéron alp7ARC, indiquant un rôle essentiel dans la ségrégation plasmidique. Nos résultats préliminaires sur Alp7A ont montré qu'il s'assemble dans une nouvelle nanostructure tubulaire plutôt que des filaments, suggérant un nouveau mécanisme de ségrégation de l'ADN par Alp7A. Nous avons également étudié la structure d'Alp7A in vivo en utilisant une combinaison d'approches, notamment la biologie moléculaire, la Cryo-ET et la fLM. Nous avons également utilisé la CLEM pour localiser Alp7A dans des cellules entières à une résolution macromoléculaire. En outre, nous avons étudié la structure et la fonction d'Alp7A in vitro en transfectant B. subtilis et E. coli avec diverses constructions plasmidiques incorporant des mutations dans le gène d’Alp7A. Nous avons déployé différentes méthodes pour la purification de la protéine Alp7A, y compris la séparation par chromatographie, et le fractionnement au sulfate d'ammonium. J'ai discuté des divers défis que nous avons rencontrés dans ces expériences, tels que la contamination, l'instabilité de la protéine Alp7A et l'épaisseur bactérienne. Enfin, j'ai proposé des approches expérimentales alternatives qui aideraient à étudier le mécanisme de ségrégation des plasmides par Alp7ARC. / Project I: Endospores represent a dormant state of bacteria that allows them to withstand extreme conditions and persist for years. Endospore formation has shaped evolution, whereby it exclusively occurs in Firmicutes. Several studies have reported endospore formation in species outside of Firmicutes, particularly in two species of Proteobacteria, Rhodobacter johrii and Serratia marcescens, and one species of Actinobacteria, Mycobacterium marinum. Identifying endospores outside of Firmicutes would affect the shape of the tree of life and aid in our fight against human pathogens. Therefore, we aimed to investigate endosporulation in these three species using advanced imaging and analytical approaches, including correlative light and electron microscopy (CLEM), cryo-electron tomography (cryo-ET), and lipidomics. We used the well-characterized sporulating bacterium Bacillus subtilis as a positive control of sporulation. Examination of R. johrii, S. marcescens, and M. marinum using CLEM and cryo-ET showed that phase-bright objects did not resemble any stages of endosporulation. Cryo-tomograms revealed that the phase-bright objects in S. marcescens were aggregated cellular debris of dead cells, whereas they displayed granular structures typical of bacterial cells in R. johrii and M. marinum. Lipidomic analysis in R. johrii identified the granular structures as potential storage granules enriched with triacyl-glycerides (TAGs). We speculate that TAGs may provide an energy source to withstand the nutrient depletion. Additional biochemical and bioinformatics approaches supported our conclusions that R. johrii, S. marcescens, and M. marinum are non-sporulating bacteria. Project II: Plasmids play a vital role in the spread of resistance genes within and across bacterial species. Therefore, it is essential to understand the bacterial systems involved in the transfer and maintenance of plasmids to better aid in our fight against the spread of antibiotic resistance. In this doctorate, we aimed to characterize the alp7ARC operon, employing the bacterial actin homolog Alp7A to segregate the tetracycline resistance-encoding plasmid pLS20 in B. subtilis. The stability of the plasmid was shown to be dependent on the alp7ARC operon, indicating an essential role in plasmid segregation. Preliminary results on Alp7A showed that it assembles into a novel tubular nanostructure rather than filaments, suggesting a novel mechanism for DNA segregation by Alp7A. We further studied the structure of Alp7A in vivo using combination of approaches, including molecular biology, cryo-ET, and fLM. We also used CLEM to localize Alp7A in whole cells to a macromolecular resolution. Besides, we investigated the structure and function of Alp7A in vitro by transfecting E. coli with various plasmid constructs and purification by several methods, including affinity chromatography and ammonium sulfate precipitation. I discussed the diverse challenges we encountered in these experiments, such as bacterial thickness, contamination, and Alp7A protein instability. Finally, I proposed alternative experimental approaches for investigating the mechanism of plasmid segregation by Alp7ARC.

Die vorliegende Arbeit beschäftigt sich mit der elektrischen Charakterisierung von Zinkoxid-Nanodrähten, die mittels gepulster Laserablation (PLD) hergestellt wurden. Ausgehend von den so generierten ZnO-Nanodraht-Ensembles werden Methoden zu deren elektrischer Untersuchung diskutiert und auf praktische Anwendbarkeit hin verglichen. Die entwickelten Methoden werden auf Ensembles von auf n-leitenden ZnO- und ZnO:Ga-Dünnschichten aufgewachsenen Phosphor-dotierten ZnO-Nanodrähten angewendet. Deren reproduzierbares, in Strom–Spannungs- (I–U-) Kennlinien beobachtetes diodenartiges Verhalten wird genauer beleuchtet. Im Zusammenhang mit der elektrischen Charakterisierung einzelner ZnO-Nano-drähte werden experimentelle Methoden zur Vereinzelung und zur Kontaktierung der vereinzelten ZnO-Nanodrähte diskutiert. Dabei werden sowohl etablierte Methoden wie Elektronenstrahllithographie (EBL) als auch neue Techniken wie elektronen- und ionenstrahlinduzierte Deposition (EBID/IBID) und Strom–Spannungs-Rastersondenmikroskopie (I-AFM) behandelt und ihre Eignung für eingehende elektrische Untersuchungen und reproduzierbare Messungen analysiert. Die geeignetsten Methoden werden schließlich eingesetzt, um spezifischen Widerstand sowie Ladungsträgermobilität und -dichte sowohl in nominell undotierten als auch in Aluminium-dotierten ZnO-Nanodrähten zu untersuchen und zu vergleichen. In der Ableitung der physikalischen Materialparameter aus den Messdaten wird dabei besonderes Augenmerk auf die Einbeziehung der geometrischen Besonderheiten der Nanodrähte gegenüber Volumenmaterial- und Dünnschichtproben gelegt. Im Zuge dessen wird unter anderem ein Modell für den elektrischen Widerstand in Nanodrähten mit ihrer Länge nach veränderlichem Querschnitt abgeleitet.