The morphology of plant body is shaped by genetically coded developmental programme together with environmental factors. The influence of environmental factors on the morphology is much more important in plants that in other multicellular organisms. The developmental programme provides a general scheme that is modified by environmental signals. Phytohormone auxin is a regulator of plant morphogenesis and its distribution in the plant body is an important mechanism controling the growth and development of plants and coordinating the developmental programme with environmentally-induced changes. This thesis investigates factors important for transport of auxin from cells, second part is dedicated to bioinformatic analysis of the transporters from the PIN protein family. For investigation of signals involved in regulation of activity of auxin efflux transporters I have selected (based on published information) physiological signals influencing auxin transport. These signals were changed by treatment with chemicals and resulting changes in auxin transport were measured (on the cellular level) with the intention to discover signals that can rapidly (within minutes) change the activity of auxin efflux transporters. The signals, which satisfy these requirements were subjected to further investigation. He detailed...

Para medicamentos administrados oralmente, as etapas de liberação do fármaco a partir da forma farmacêutica e sua subsequente absorção constituem importantes processos para que a adequada biodisponibilidade oral ocorra. Deste modo, as características de solubilidade e de permeabilidade são de extrema importância para que mecanismos relacionados à absorção sejam compreendidos no âmbito das propriedades ADME (absorção, distribuição, metabolismo e excreção). Com base nisso, o Sistema de Classificação Biofarmacêutica (SCB) foi proposto como uma ferramenta que permite a classificação de fármacos em quatro classes distintas de acordo com a solubilidade e permeabilidade. De maneira complementar, o Sistema de Classificação Biofarmacêutica de Distribuição de Fármacos (SCBDF) foi proposto levando em consideração a solubilidade e o metabolismo das substâncias, além de considerar o impacto de transportadores presentes nos tecidos biológicas, inclusive no trato gastrintestinal (TGI). Assim, o presente trabalho teve como objetivo avaliar os mecanismos envolvidos na permeabilidade de fármacos antirretrovirais (estavudina, lamivudina e zidovudina) por meio do modelo de perfusão in situ com coleta de sangue mesentérico em ratos, considerando os aspectos relacionados ao efluxo e ao metabolismo pré-sistêmico que ocorrem nos enterócitos. Além disso, estudos in vitro em culturas celulares MDCK e MDCK-MDR1 foram realizados a fim de auxiliar na elucidação dos mecanismos de transporte dos referidos fármacos. Para a realização dos estudos de perfusão in situ, ratos Wistar foram anestesiados e a porção do jejuno foi canulada para permitir a entrada do fármaco solubilizado no interior do intestino, bem como a coleta das amostras de perfusato em intervalos regulares de tempo. A veia mesentérica também foi canulada para viabilizar a obtenção das amostras de sangue durante os experimentos. Para os estudos de efluxo, o verapamil foi adicionado à solução de perfusão como inibidor de Pgp (glicoproteína-P), enquanto que o cetoconazol foi empregado como inibidor de enzimas CYP3A. Em modelo in vitro MDCK e MDCK-MDR1, os experimentos foram conduzidos bidirecionalmente com o uso de GG918 como inibidor de P-gp. Em todos os experimentos realizados, o metoprolol e a ranitidina foram empregados como marcadores de alta e de baixa permeabilidade, respectivamente. Os resultados de permeabilidade mostraram que a estavudina e a zidovudina apresentam características de alta permeabilidade, enquanto a lamivudina apresentou o menor resultado dentre os três fármacos. Os ensaios bidirecionais em MDCK, no entanto, mostraram que os três antirretrovirais apresentam baixos valores de permeabilidade, uma vez que seus resultados foram significativamente menores que o valor encontrado para o metoprolol. Com relação à avaliação do mecanismo de efluxo, tanto a lamivudina quanto a zidovudina apresentaram interações significativas com a P-gp nos dois métodos empregados (perfusão in situ e MDCK-MDR1), uma vez que o aumento nos valores de permeabilidade foi constatado quando o inibidor de P-gp foi empregado. Os estudos de metabolismo intestinal realizados por meio do modelo de perfusão in situ mostraram que nenhum dos fármacos antirretrovirais apresentou interação significativa com as enzimas CYP3A quando o cetoconazol foi empregado como inibidor, uma vez que não foram constatadas mudanças significativas nos valores de permeabilidade. A comparação entre os resultados de permeabilidade efetiva (Pef) e de permeabilidade aparente (Pap), obtidos por meio da quantificação das amostras de perfusato e de plasma, respectivamente, permitiu verificar que as diferenças estatísticas entre estes dois parâmetros podem indicar variados mecanismos de transporte, uma vez que a Pap constata a quantidade da substância que realmente foi capaz de superar as barreiras físicas e bioquímicas presentes na parede do TGI. Logo, a Pap é considerada um parâmetro mais próximo das condições in vivo. Esta diferença foi constatada apenas para a zidovudina nos ensaios de transporte de efluxo, uma vez que o valor médio de Pef não representou a mesma conclusão fornecida pelo valor médio de Pap. Os resultados obtidos permitiram concluir que os fármacos antirretrovirais apresentam permeabilidade de moderada a alta em função do possível envolvimento de carreadores de influxo. Além disso, os três fármacos antirretrovirais interagiram de alguma forma com a P-gp, sendo os resultados referentes à lamivudina e à zidovudina mais significativos. Embora tenha sido constatada o envolvimento da P-gp na permeabilidade da zidovudina, sua elevada fração absorvida indica que a absorção desta substância não é limitada por este mecanismo e que a ação do carreador de efluxo não é clinicamente relevante neste caso. Com relação aos estudos de metabolismo, a presença de enzimas CYP3A nos enterócitos também não representou uma condição desfavorável para a absorção dos antirretrovirais. Assim, a avaliação dos mecanismos no presente trabalho contribuiu para a caracterização biofarmacêutica da estavudina, lamivudina e zidovudina e as metodologias descritas podem ser empregadas nas etapas iniciais de desenvolvimento farmacêutico com o objetivo de assegurar a segurança e a eficácia de medicamentos. / For orally administered pharmaceutical products, the drug release from the dosage form and its absorption are considered important processes for adequate oral bioavailability. Thus, the solubility and permeability characteristics are extremely important for understanding of mechanisms related to the absorption in the scope of the ADME properties (absorption, distribution, metabolism and excretion). Based on that, the Biopharmaceutics Classification System (BCS) was proposed as a tool for classifying drugs into four classes considering their solubility and permeability characteristics. In an additional way, the Biopharmaceutics Drug Disposition Classification System (BDDCS) was proposed considering the solubility and metabolism of compounds. Besides, the BDDCS also considers the impact of transporters in biological tissues, such as in the gastrointestinal tract (GIT). Thus, this study aimed to evaluate the mechanisms involved in the permeability of antiretroviral drugs (stavudine, lamivudine and zidovudine) using the intestinal in situ perfusion model with mesenteric blood sampling in rats, considering efflux and intestinal pre-systemic metabolism that occur in the enterocytes. Furthermore, in vitro studies in cell cultures MDCK and MDCK-MDR1 were performed in order to elucidate the transport mechanisms of the drugs. For intestinal in situ perfusion studies, Wistar rats were anesthetized and a portion of jejunum was cannulated to allow the drug entry into the intestine, as well as the perfusate sampling at regular time intervals. The mesenteric vein was also cannulated to allow blood sampling during the experiments. For efflux studies, verapamil was used as P-gp (P-glycoprotein) inhibitor while ketoconazole was used as CYP3A inhibitor. In in vitro model MDCK and MDCK-MDR1, the experiments were performed bidirectionally using GG918 as P-gp inhibitor. For all experiments, metoprolol and ranitidine were used as markers of high and low permeability, respectively. Permeability results showed that stavudine and zidovudine present high permeability characteristics while lamivudine showed the lowest value. However, bidirectional studies in MDCK showed that the antiretroviral drugs present low permeability since their results are far from metoprolol\'s results. Regarding efflux studies, both lamivudine and zidovudine presented relevant interaction with P-gp in in situ perfusion and MDCK-MDR1 models, since the increase in permeability values was observed when P-gp inhibitor was added. Metabolism studies performed through intestinal in situ perfusion showed that none of antiretroviral drugs interact significantly with CYP3A enzymes, since that no variation in permeability results were noticed. Comparison between effective permeability (Peff) and apparent permeability (Papp), obtained from prefusate and plasma, respectively, allowed to check that statistical differences between these two parameters can indicate different transport mechanisms, since Papp is related to the drug amount that really overcome the physical and biochemical barriers in the gut. Thus, Papp is considered the closest parameter to in vivo condition. This difference was observed for zidovudine in efflux studies, since Peff values does not match with the conclusion provided by the Papp. The results obtained allowed to conclude that the antiretroviral drugs presents moderate to high permeability due to the involvement of influx carriers. Furthermore, the antiretroviral drugs interacted with the P-gp, but lamivudine and zidovudine showed significant results. Although the involvement between zidovudine and P-gp is observed, its high fraction absorbed indicates that the absorption is not limited by efflux transporter, which is not relevant clinically. Regarding 32 metabolism studies, CYP3A enzymes is not considered as a limiting condition for absorption of the antiretroviral drugs. Thus, the evaluation of the mechanisms contributes for biopharmaceutical characterization of stavudine, lamivudine and zidovudine and the methodologies used in this study can be applied in early drug development to ensure adequate safety and efficacy of pharmaceutical products.

Submitted by Sara Ribeiro (sara.ribeiro@ucb.br) on 2018-04-16T14:40:02Z No. of bitstreams: 1 FernandaNomiyamaFigueiredoDissertacao2018.pdf: 2178476 bytes, checksum: 23f38c14567d00ff189eaef20f904495 (MD5) / Approved for entry into archive by Sara Ribeiro (sara.ribeiro@ucb.br) on 2018-04-16T14:40:47Z (GMT) No. of bitstreams: 1 FernandaNomiyamaFigueiredoDissertacao2018.pdf: 2178476 bytes, checksum: 23f38c14567d00ff189eaef20f904495 (MD5) / Made available in DSpace on 2018-04-16T14:40:47Z (GMT). No. of bitstreams: 1 FernandaNomiyamaFigueiredoDissertacao2018.pdf: 2178476 bytes, checksum: 23f38c14567d00ff189eaef20f904495 (MD5) Previous issue date: 2018-03-06 / Klebsiella pneumoniae is one of the main bacterial agents that may cause infections related to health care assistance. K. pneumoniae frequently carries the resistance gene K. pneumoniae carbapenemase (KPC). Currently, tigecycline can be considered one of the last therapeutic options for KPC, but reports of tigecycline-resistant KPC isolates are on the rise, being indicated as most common mechanism the increased AcrAB-TolC efflux pump system expression. However, molecular tigecycline resistance mechanisms associated to AcrAB-TolC still remains obscure. Thus, the main goal of this study was to verify if tigecycline resistance can be related to the presence of mutations in the regulatory genes of AcrAB-TolC, AcrR and RamR. Therefore, 32 K. pneumoniae isolates were used, identification and antibiogram performed using Vitek 2 systems. The minimum inhibitory concentrations were confirmed using E-test. Primers were designed in order to verify mutations within AcrR and RamR genes. PCR analysis showed that the mutations found within these genes were transversions (94% for AcrR and 90% for RamR) and transitions (6% for AcrR and 10% for RamR). Nevertheless among the mutations, no distinction between tigecycline susceptible and resistant isolates was found. Some of the transversions caused change in the amino acid encoding 6 in AcrR and 15 in RamR. Presence of these types of mutations evaluation can be seen as the first bacterial resistance study step, as it may be caused by oxidative damage for bacterial DNA, frequently caused by antibiotic selective pressure. Tigecycline resistance found in this study`s clinical isolates may be associated to alterations in another genes that can trigger mechanisms associated to this antibiotic. / Klebsiella pneumoniae consiste em um dos principais agentes bacterianos causadores de infec????es relacionadas ?? assist??ncia ?? sa??de (IRAS). K. pneumoniae carrega frequentemente o gene de resist??ncia K. pneumoniae carbapenemase (KPC). Atualmente, a tigeciclina pode ser considerada uma das ??ltimas op????es terap??uticas para KPC, mas os relatos de isolados de KPC resistentes a tigecilina est??o em ascens??o, sendo a hiperexpress??o da bomba de efluxo AcrAB-TolC indicado como mecanismo mais comum. No entanto, os mecanismos moleculares de resist??ncia ?? tigeciclina associada ao AcrAB-TolC permanecem obscuros. Desta forma o objetivo deste trabalho foi verificar se a resist??ncia a tigeciclina pode estar relacionada ?? presen??a de muta????es nos genes ArcR e RamR, reguladores de AcrAB-TolC. Para tanto, 32 isolados de K. pneumoniae foram utilizados, sendo a identifica????o e o antibiograma feitos utilizando o sistema Vitek 2. A confirma????o das concentra????es inibit??rias m??nimas (CIMs) foram realizadas por E-test. Iniciadores foram desenhados para verifica????o de muta????es nos genes (AcrR e RamR). As an??lises por PCR mostraram que as muta????es encontradas nos genes AcrR e RamR foram substitui????es por transvers??o (94% e 90% para AcrR e RamR respectivamente) e transi????o (6% e 10% para AcrR e RamR respectivamente), por??m n??o foi identificada distin????o da presen??a de muta????es entre isolados sens??veis e resistentes a tigeciclina. Algumas tranvers??es ocasionaram mudan??a na codifica????o do amino??cido, sendo 6 em AcrR e 15 em RamR. A avalia????o da presen??a desses tipos de muta????es consiste em um primeiro passo para o estudo da resist??ncia bacteriana, j?? que pode ser causada por dano oxidativo ao DNA bacteriano, frequentemente ocasionado por press??o seletiva dos antibi??ticos. A resist??ncia a tigeciclina encontrada nos isolados cl??nicos do presente estudo, provavelmente pode estar associada a altera????es em outros genes desencadeadores de mecanismos de resist??ncia a tigeciclina.

Para medicamentos administrados oralmente, as etapas de liberação do fármaco a partir da forma farmacêutica e sua subsequente absorção constituem importantes processos para que a adequada biodisponibilidade oral ocorra. Deste modo, as características de solubilidade e de permeabilidade são de extrema importância para que mecanismos relacionados à absorção sejam compreendidos no âmbito das propriedades ADME (absorção, distribuição, metabolismo e excreção). Com base nisso, o Sistema de Classificação Biofarmacêutica (SCB) foi proposto como uma ferramenta que permite a classificação de fármacos em quatro classes distintas de acordo com a solubilidade e permeabilidade. De maneira complementar, o Sistema de Classificação Biofarmacêutica de Distribuição de Fármacos (SCBDF) foi proposto levando em consideração a solubilidade e o metabolismo das substâncias, além de considerar o impacto de transportadores presentes nos tecidos biológicas, inclusive no trato gastrintestinal (TGI). Assim, o presente trabalho teve como objetivo avaliar os mecanismos envolvidos na permeabilidade de fármacos antirretrovirais (estavudina, lamivudina e zidovudina) por meio do modelo de perfusão in situ com coleta de sangue mesentérico em ratos, considerando os aspectos relacionados ao efluxo e ao metabolismo pré-sistêmico que ocorrem nos enterócitos. Além disso, estudos in vitro em culturas celulares MDCK e MDCK-MDR1 foram realizados a fim de auxiliar na elucidação dos mecanismos de transporte dos referidos fármacos. Para a realização dos estudos de perfusão in situ, ratos Wistar foram anestesiados e a porção do jejuno foi canulada para permitir a entrada do fármaco solubilizado no interior do intestino, bem como a coleta das amostras de perfusato em intervalos regulares de tempo. A veia mesentérica também foi canulada para viabilizar a obtenção das amostras de sangue durante os experimentos. Para os estudos de efluxo, o verapamil foi adicionado à solução de perfusão como inibidor de Pgp (glicoproteína-P), enquanto que o cetoconazol foi empregado como inibidor de enzimas CYP3A. Em modelo in vitro MDCK e MDCK-MDR1, os experimentos foram conduzidos bidirecionalmente com o uso de GG918 como inibidor de P-gp. Em todos os experimentos realizados, o metoprolol e a ranitidina foram empregados como marcadores de alta e de baixa permeabilidade, respectivamente. Os resultados de permeabilidade mostraram que a estavudina e a zidovudina apresentam características de alta permeabilidade, enquanto a lamivudina apresentou o menor resultado dentre os três fármacos. Os ensaios bidirecionais em MDCK, no entanto, mostraram que os três antirretrovirais apresentam baixos valores de permeabilidade, uma vez que seus resultados foram significativamente menores que o valor encontrado para o metoprolol. Com relação à avaliação do mecanismo de efluxo, tanto a lamivudina quanto a zidovudina apresentaram interações significativas com a P-gp nos dois métodos empregados (perfusão in situ e MDCK-MDR1), uma vez que o aumento nos valores de permeabilidade foi constatado quando o inibidor de P-gp foi empregado. Os estudos de metabolismo intestinal realizados por meio do modelo de perfusão in situ mostraram que nenhum dos fármacos antirretrovirais apresentou interação significativa com as enzimas CYP3A quando o cetoconazol foi empregado como inibidor, uma vez que não foram constatadas mudanças significativas nos valores de permeabilidade. A comparação entre os resultados de permeabilidade efetiva (Pef) e de permeabilidade aparente (Pap), obtidos por meio da quantificação das amostras de perfusato e de plasma, respectivamente, permitiu verificar que as diferenças estatísticas entre estes dois parâmetros podem indicar variados mecanismos de transporte, uma vez que a Pap constata a quantidade da substância que realmente foi capaz de superar as barreiras físicas e bioquímicas presentes na parede do TGI. Logo, a Pap é considerada um parâmetro mais próximo das condições in vivo. Esta diferença foi constatada apenas para a zidovudina nos ensaios de transporte de efluxo, uma vez que o valor médio de Pef não representou a mesma conclusão fornecida pelo valor médio de Pap. Os resultados obtidos permitiram concluir que os fármacos antirretrovirais apresentam permeabilidade de moderada a alta em função do possível envolvimento de carreadores de influxo. Além disso, os três fármacos antirretrovirais interagiram de alguma forma com a P-gp, sendo os resultados referentes à lamivudina e à zidovudina mais significativos. Embora tenha sido constatada o envolvimento da P-gp na permeabilidade da zidovudina, sua elevada fração absorvida indica que a absorção desta substância não é limitada por este mecanismo e que a ação do carreador de efluxo não é clinicamente relevante neste caso. Com relação aos estudos de metabolismo, a presença de enzimas CYP3A nos enterócitos também não representou uma condição desfavorável para a absorção dos antirretrovirais. Assim, a avaliação dos mecanismos no presente trabalho contribuiu para a caracterização biofarmacêutica da estavudina, lamivudina e zidovudina e as metodologias descritas podem ser empregadas nas etapas iniciais de desenvolvimento farmacêutico com o objetivo de assegurar a segurança e a eficácia de medicamentos. / For orally administered pharmaceutical products, the drug release from the dosage form and its absorption are considered important processes for adequate oral bioavailability. Thus, the solubility and permeability characteristics are extremely important for understanding of mechanisms related to the absorption in the scope of the ADME properties (absorption, distribution, metabolism and excretion). Based on that, the Biopharmaceutics Classification System (BCS) was proposed as a tool for classifying drugs into four classes considering their solubility and permeability characteristics. In an additional way, the Biopharmaceutics Drug Disposition Classification System (BDDCS) was proposed considering the solubility and metabolism of compounds. Besides, the BDDCS also considers the impact of transporters in biological tissues, such as in the gastrointestinal tract (GIT). Thus, this study aimed to evaluate the mechanisms involved in the permeability of antiretroviral drugs (stavudine, lamivudine and zidovudine) using the intestinal in situ perfusion model with mesenteric blood sampling in rats, considering efflux and intestinal pre-systemic metabolism that occur in the enterocytes. Furthermore, in vitro studies in cell cultures MDCK and MDCK-MDR1 were performed in order to elucidate the transport mechanisms of the drugs. For intestinal in situ perfusion studies, Wistar rats were anesthetized and a portion of jejunum was cannulated to allow the drug entry into the intestine, as well as the perfusate sampling at regular time intervals. The mesenteric vein was also cannulated to allow blood sampling during the experiments. For efflux studies, verapamil was used as P-gp (P-glycoprotein) inhibitor while ketoconazole was used as CYP3A inhibitor. In in vitro model MDCK and MDCK-MDR1, the experiments were performed bidirectionally using GG918 as P-gp inhibitor. For all experiments, metoprolol and ranitidine were used as markers of high and low permeability, respectively. Permeability results showed that stavudine and zidovudine present high permeability characteristics while lamivudine showed the lowest value. However, bidirectional studies in MDCK showed that the antiretroviral drugs present low permeability since their results are far from metoprolol\'s results. Regarding efflux studies, both lamivudine and zidovudine presented relevant interaction with P-gp in in situ perfusion and MDCK-MDR1 models, since the increase in permeability values was observed when P-gp inhibitor was added. Metabolism studies performed through intestinal in situ perfusion showed that none of antiretroviral drugs interact significantly with CYP3A enzymes, since that no variation in permeability results were noticed. Comparison between effective permeability (Peff) and apparent permeability (Papp), obtained from prefusate and plasma, respectively, allowed to check that statistical differences between these two parameters can indicate different transport mechanisms, since Papp is related to the drug amount that really overcome the physical and biochemical barriers in the gut. Thus, Papp is considered the closest parameter to in vivo condition. This difference was observed for zidovudine in efflux studies, since Peff values does not match with the conclusion provided by the Papp. The results obtained allowed to conclude that the antiretroviral drugs presents moderate to high permeability due to the involvement of influx carriers. Furthermore, the antiretroviral drugs interacted with the P-gp, but lamivudine and zidovudine showed significant results. Although the involvement between zidovudine and P-gp is observed, its high fraction absorbed indicates that the absorption is not limited by efflux transporter, which is not relevant clinically. Regarding 32 metabolism studies, CYP3A enzymes is not considered as a limiting condition for absorption of the antiretroviral drugs. Thus, the evaluation of the mechanisms contributes for biopharmaceutical characterization of stavudine, lamivudine and zidovudine and the methodologies used in this study can be applied in early drug development to ensure adequate safety and efficacy of pharmaceutical products.

L’objectif de cette thèse a été d’élaborer une stratégie de détoxification la quantité d'un composé intracellulaire en permettant sa sortie hors de la cellule via l'utilisation d'un système d’efflux.L’hôte choisi pour cette étude est un nouvel organisme modèle, Deinococcus geothermalis. Nous avons utilisé les pompes d'efflux comme outils biologique pour permettre la sortie d'un composé devenu toxique en intracellulaire. Pour ce faire, nous avons dans un premier temps inséré par recombinaison homologue une sélection de gènes codant pour des pompes d’efflux hétérologues dans le chromosome de D. geothermalis. Puis la seconde étape a été de déterminé la susceptibilité des recombinants obtenus vis à vis de composés à forte valeur ajoutée. Un certain nombre de recombinants présentant une résistance plus élevée que la souche sauvage à plusieurs composés ont alors été sélectionnés. L'étape suivante a été de vérifier que le gain de résistance observé était effectivement dû à l’insertion dans l’enveloppe bactérienne d’une pompe d’efflux fonctionnelle. Pour ce faire, des tests d’efflux employant un marqueur fluorescent, le composé Hoechst 33342 ou avec un antibiotique fluorescent ont été réalisés. Nous avons réussi à obtenir la preuve de concept qu' un gène codant pour une pompe d'efflux hétérologue pouvait conduire à l'expression d'une protéine fonctionnelle chez D. geothermalis et cette protéine membranaire permettait la diminution la quantité intracellulaire d'un composé donné. / The objective of this thesis was to develop a strategy for detoxifying the amount of an intracellular compound by allowing its exit from the cell through the use of an efflux system.The host chosen for this study is a new model organism, Deinococcus geothermalis. We used efflux pumps as biological tools to allow the release of a compound that became toxic intracellularly. To do this, we first inserted by homologous recombination a selection of genes encoding heterologous efflux pumps into the D. geothermalis chromosome. Then the second step was to determine the susceptibility of the recombinants obtained to high value-added compounds. A number of recombinants with higher resistance than the wild multi-compound strain were then selected. The next step was to verify that the observed resistance gain was indeed due to the insertion of a functional efflux pump into the bacterial shell. To do this, efflux tests using a fluorescent marker, Hoechst compound 33342 or with a fluorescent antibiotic were performed. We were able to obtain proof of concept that a gene encoding a heterologous efflux pump could lead to the expression of a functional protein in D. geothermalis and that this membrane protein allowed the intracellular amount of a given compound to be decreased.

Multidrug resistance (MDR), a phenomenon in which tumors that were initially sensitive, recur and start showing resistance not only to the initial chemotherapeutic agent but also to various anticancer drugs that are structurally and functionally different from the initial drug, constitutes one of the main reasons for the failure of chemotherapy. An important mechanism of MDR is the enhanced cellular efflux of anticancer agents due to an overexpression of ATP-binding cassette (ABC) transporters (i.e. efflux transporters), especially P-glycoprotein (Pgp), Multidrug Resistance-associated Protein 1 (MRP1) and Breast Cancer Resistance Protein (BCRP), in cancer cells. In order to reverse this resistance, there has been a lot of emphasis on the development of Pgp, MRP1 and BCRP inhibitors. Although this search has been ongoing for three decades, there are still no clinically available efflux transporter modulators. Tyrosine kinase inhibitors (TKIs) are a novel, rapidly growing class of anticancer agents that have a target-based mechanism of action, and their use transformed cancer chemotherapy due to higher specificity and enhanced safety profiles compared to conventional chemotherapeutic agents. Despite their tremendous success in treating various types of tumors, patients develop resistance to TKIs over time. Most of the FDA- approved TKIs are substrates of Pgp and/or BCRP, and as a result, these efflux transporters are also an important cause of conferred resistance against TKIs in cancer cells. Additionally, none of the 31 approved TKIs have an indication for use in brain tumors and interestingly, this may also due to the presence of Pgp and BCRP at the blood-brain barrier (BBB) and in the tumor cells, which prevent the TKI from crossing the BBB and reaching its target tumor site. Since Pgp- and BCRP- mediated TKI efflux has been shown to be involved in TKI resistance, the inhibition of these transporters could represent a potential TKI resistance reversal strategy. Over the last three decades, a large number of Pgp and/or BCRP inhibitors have been identified, but none of them have successfully made it to the clinic. It was observed that most drugs identified as inhibitors were either unable to achieve Pgp and BCRP inhibitory concentrations in-vivo without imparting severe toxicity, or did not possess adequate bioavailability and tissue distribution profiles in order to reach the tumor site. From these identified candidate inhibitors, after much thought and consideration, we chose to investigate TKIs and methylated flavones as modulators of efflux transporter-mediated TKI resistance. The overall goal of this project was to investigate the promising chemosensitizing potential of TKIs and methylated flavones in efflux transporter-mediated TKI resistance, both in-vitro and in-vivo. To identify potent efflux transporter inhibitor TKIs, we evaluated the effect of various TKIs on the accumulation of afatinib, the model TKI substrate, in Pgp- and BCRP- overexpressing cell lines. Afatinib was chosen as the model TKI substrate for our study because it undergoes very minimal metabolism in several species. Afatinib is a substrate of both Pgp and BCRP, but is not a substrate of uptake transporters. Therefore, it was anticipated that an in-vivo efflux transporter-mediated interaction with afatinib would most likely not be confounded or masked by other factors influencing its disposition. From the in-vitro cell uptake studies, we found that nilotinib is a potent inhibitor of both Pgp and BCRP, and it reversed Pgp- and BCRP- mediated afatinib efflux. Subsequently, an in-vivo study was carried out in mice to investigate the interaction between afatinib and nilotinib; and also the impact of nilotinib on the pharmacokinetics and tissue distribution of afatinib. Afatinib exposure in the plasma and in most tissues, namely liver, lung, kidney, heart, muscle, fat, and skin, was found to be significantly increased when nilotinib was coadministered with afatinib. Further, the nilotinib concentrations in most mice tissues was above that needed for Pgp and BCRP inhibition. These results showed that nilotinib could be a potent chemosensitizing agent for Pgp- and BCRP- mediated TKI resistance. Additionally, a significant increase in afatinib brain exposure was observed in the mice which were administered afatinib in combination with nilotinib. This is an interesting and important finding that could potentially be very useful in the treatment of primary and metastasized brain tumors. We also developed a physiologically based pharmacokinetic model of afatinib to characterize its tissue disposition in mice organs, and this model was then scaled up to humans. The developed model accurately predicted afatinib plasma exposure in healthy volunteers and patients with solid malignant tumors, renal impairment, and hepatic impairment. To investigate the chemosensitizing potential of methylated flavones in efflux transporter-mediated TKI resistance, the Bcrp1 inhibitory effect of 5,7-DMF and its effect on sorafenib accumulation was evaluated in-vitro. 5,7- DMF was found to be a potent inhibitor of Bcrp1 and consequently, its impact on the pharmacokinetics and tissue distribution of sorafenib was evaluated in mice. Results showed that co-administration with 5,7-DMF led to significantly greater sorafenib exposure in plasma and in most tissues collected. This indicated that 5,7-DMF may represent a promising chemosensitizing agent for Bcrp1-mediated TKI resistance due to its low toxicity and potent Bcrp1 inhibition. Our results may have important clinical implications as TKIs are currently the most widely used anticancer agents. 5,7-DMF may show great potential in reversing MDR in tumors expressing BCRP. On the other hand, TKI-TKI combination therapy, especially with nilotinib as the perpetrator, is an attractive strategy to combat both Pgp- and BCRP-mediated TKI resistance. Additionally, since nilotinib has a wide volume of distribution and can reach various tissues at concentrations sufficient enough to inhibit Pgp and BCRP; it could potentially be used as a chemosensitizer in the treatment of numerous types of cancers. Furthermore, its chemosensitizing potential could particularly be useful in the treatment of primary and metastatic brain tumors. Further studies are warranted to assess the chemosensitizing effect of nilotinib in tumor xenograft models.

Campylobacter jejuni is the leading bacterial cause of human gastroenteritis in the United States. Increasing resistance of Campylobacter to clinical antibiotics raises an urgent need for novel strategies to prevent and control infections in humans and animal reservoirs, which necessitates a better understanding of Campylobacter pathogenesis. We hypothesize that multidrug efflux pump CmeABC and ferric enterobactin (FeEnt) iron acquisition systems, which play a critical role in Campylobacter pathogenesis, are novel targets for developing effective measures against Campylobacter. To test this, the molecular, antigenic, functional, and protective characteristics of two outer membrane proteins, CmeC (an essential component of CmeABC drug efflux pump) and CfrA (a FeEnt receptor), were examined. Both CmeC and CfrA are highly conserved and widely produced in C. jejuni strains. Anti-CmeC and Anti-CfrA antibodies inhibited the function of CmeABC efflux pump and CfrA, resulting enhanced susceptibility to bile salts and reduced utilization of FeEnt of C. jejuni, respectively. Immunoblotting analysis also indicated that CfrA is expressed and immunogenic in vivo. Amino acid substitution mutagenesis demonstrated that a highly conserved basic amino acid R327 in CfrA plays a critical role in FeEnt acquisition. The purified recombinant CmeC and a Salmonella live vaccine expressing the protective epitope of CfrA were evaluated as subunit vaccines against Campylobacter infection in the chicken model. CmeC vaccination elicited immune response but failed to reduce C. jejuni colonization in the intestine. However, Salmonella-vectored vaccine conferred significant protection against C. jejuni challenge. To further elucidate the role of iron acquisition in the pathogenesis of Campylobacter, whole genome sequence of a unique C. jejuni strain was determined using a 454 GS FLX sequencer with Titanium series reagents. Comparative genomics analysis led to the identification of a novel Campylobacter Enterobactin Esterase (Cee) that is essential in the CfrB-dependent FeEnt utilization pathway. Extensive genetic manipulation revealed molecular pathways and mechanistic features of the two orchestrated FeEnt acquisition systems in Campylobacter. This project provides critical information about the feasibility of targeting CmeC and CfrA for immune protection against Campylobacter colonization in the intestine, and increases our understanding of the critical role of FeEnt acquisition in the pathophysiology of Campylobacter.

Borrelia is a Gram-negative, corkscrew-shaped bacterium transmitted by infected ticks or lice. Borreliae are subdivided into pathogens of two diseases: Lyme disease, caused mainly by B. burgdorferi, B. afzelii and B. garinii; and relapsing fever caused primarily by B. duttonii, B. hermsii, B. recurrentis or B. crocidurae. Both diseases differ in their manifestations, duration times and dissemination patterns. Antibiotics are the major therapeutics, although unfortunately antibiotic treatment is not always beneficial. To date, drug resistance mechanisms in B. burgdorferi are unknown. Transporters of the resistance-nodulation-division (RND) family appear to be involved in drug resistance, especially in Gram-negative bacteria. They consist of three components: a cytoplasmic membrane export system, a membrane fusion protein (MFP), and an outer membrane factor (OMP). The major antibiotic efflux activity of this type in Escherichia coli is mediated by the tripartite multidrug resistance pump AcrAB-TolC. Based on the sequence homology we conclude that the besA (bb0140), besB (bb0141) and besC (bb0142) genes code for a similar efflux system in B. burgdorferi. We created a deletion mutant of besC. The minimal inhibitory concentration (MIC) values of B. burgdorferi carrying an inactive besC gene were 4- to 8-fold lower than in the wild type strain. Animal experiments showed that the besC mutant was unable to infect mice. Black lipid bilayer experiments were carried out to determine the biophysical properties of purified BesC. This study showed the importance of BesC protein for B. burgdorferi pathogenicity and resistance to antibiotics, although its importance in clinical isolates is not known. Due to its small genome, Borrelia is metabolically and biosynthetically deficient, thereby making it highly dependent on nutrients provided by their hosts. The uptake of nutrients by Borrelia is not yet completely understood. We describe the purification and characterization of a 36-kDa protein that functions as a putative dicarboxylate-specific porin in the outer membrane of Borrelia. The protein was designated as DipA, for dicarboxylate-specific porin A. DipA was biophysically characterized using the black lipid bilayer assay. The permeation of KCl through the channel could be partly blocked by titrating the DipA-mediated membrane conductance with increasing concentrations of different organic dicarboxylic anions. The obtained results imply that DipA does not form a general diffusion pore, but a porin with a binding site specific for dicarboxylates which play important key roles in the deficient metabolic and biosynthetic pathways of Borrelia species. The presence of porin P66 has been shown in both Lyme disease and relapsing fever spirochetes. In our study, purified P66 homologues from Lyme disease species B. burgdorferi, B. afzelii and B. garinii and relapsing fever species B. duttonii, B. recurrentis and B. hermsii were compared and their biophysical properties were further characterized in black lipid bilayer assay. Subsequently, the channel diameter of B. burgdorferi P66 was investigated in more detail. For this study, different nonelectrolytes with known hydrodynamic radii were used. This allowed us to determine the effective diameter of the P66 channel lumen. Furthermore, the blockage of the channel after addition of nonelectrolytes revealed seven subconducting states and indicated a heptameric structure of the P66 channel. These results may give more insight into the functional properties of this important porin.

La multi-résistance aux drogues des bactéries est un problème majeur en clinique. L'un des mécanismes de résistance consiste à effluer les composés toxiques hors de la cellule grâce à des protéines de la membrane interne nommées pompes d'efflux. Ces protéines appartiennent à cinq familles (MFS, RND, MATE, SMR et ABC) et peuvent fonctionner en association avec deux autres types de protéines (protéine du périplasme et protéine de la membrane externe) pour former un canal. Dans le cadre d'une thématique de recherche basée sur l'étude des mécanismes de résistance auxdrogues de la bactérie pathogène Legionella pneumophila, une approche bioinformatique menée sur lesgénomes de trois souches séquencés (souches Lens, Paris et Philadelphia) a permis d'identifier des protéinespouvant participer à l'efflux. Notre but a été de vérifier l'implication de ces protéines dans la résistance auxdrogues et dans la virulence de Legionella en ciblant un ou plusieurs gènes codant pour des composants desystèmes d'efflux. Pour inactiver les gènes, nous avons choisi une stratégie de recombinaison homologue. Lesrecombinants ont été testés pour leur sensibilité à des composés toxiques afin de voir si les gènes ciblés jouentun rôle dans l'efflux d'E. coli. Un de ces mutants, le mutant MF201, altéré pour le gène codant pour une protéinehomologue à TolC chez E. coli s'est avéré être 2 à 16 fois plus sensible aux drogues testées comparé à lasouche sauvage. De plus, ce mutant présente un défaut important de virulence dans Acanthamoeba castellanii,Dictyostelium discoideum et les macrophages U937. Ce premier résultat implique que la protéine TolC-like deLegionella aurait un rôle clef dans la relation hôte pathogène et sous-tend un lien entre multi-résistance auxdrogues et virulence. Par ailleurs une étude de l'expression des gènes codant pour des pompes à efflux a étéinitiée afin de comprendre leur rôle au cours du cycle infectieux de Legionella.

Pseudomonas aeruginosa is a Gram-negative opportunistic human pathogen known to cause a variety of infections that are difficult to treat due to extremely high resistance to almost all antibiotics currently in clinical use. One of the major contributors to this resistance is the active efflux of antibiotics from the cell, primarily by action of the Resistance Nodulation Division (RND) family of efflux pumps. These pumps are composed of three proteins; an inner membrane RND pump, a periplasmic membrane fusion adaptor protein, and an outer membrane protein. The mechanism by which the three proteins interact to form a functional complex is largely unknown and the methods currently available for their study involves expression systems geared for high levels of expression. In the case of membrane proteins which play a role in clinically relevant activities, such as multidrug resistance, an expression system which does not always reflect biologically relevant levels of protein in the cell is not ideal for studying their interactions as correlation of conclusions from interaction studies to true interactions may not be possible. In this study a single copy gene expression system was designed and demonstrated to better reflect clinically relevant levels of overexpression compared to a multi-copy expression system. Quantitative-real time PCR analysis of C-terminally hexa-histidine tagged outermembrane protein, OpmH, expression shows approximately 100-fold and 20-fold overexpression from multi-copy and single-copy expression systems respectively. OpmH-H6 was successfully purified from both multi copy and single copy expression systems with proportionate purification schemes indicating the feasibility of single copy expression systems for the study of membrane bound protein complexes. / UOIT