No description available.

The work presented in this thesis was aimed to investigate the structure-function relationship of several photosynthetic Light-Harvesting Complexes (LHCs) including Chlorophyll Protein 29 (CP29) and Light-Harvesting Complex II (LHCII) of green plants, and Fenna-Matthews-Olson (FMO) complex of green sulfur bacterium Chlorobium tepidum. Based on the exciton calculations, a model was proposed to the electronic excited states (EES) of both CP29 and LHCII complexes by incorporating a considerable part of the current information offered by structure determination, mutagenesis analysis and spectroscopy in the modeling. The essential parameters for characterizing the excited states, Qy dipole orientations and site energies were assigned by suggesting a model that can explain both the key features of the linear (polarized) absorption spectra and the time scales of the energy transfer processes in CP29 and LHCII. The idea of offering structural information through setting connection between the spectroscopy and the spectral simulations were supported by the presented results on CP29 and LHCII. New spectroscopic measurements (absorption, linear dichroism (LD) and circular dichroism), carried out at 4 K on the FMO complex were presented, and also the LD spectrum was corrected for the degree of orientation of the sample, in order to provide comparison of not only the shape but also the size of the simulated and experimental spectra. The EES structure of the FMO complex was studied by simulating the measured optical spectra with more realistic model than the previously applied models. Simulations have been carried out with a computer program based on exciton model, which includes inhomogeneous, homogeneous and lifetime broadenings explicitly.

The nature of the ground state and the first (lowest) singlet excited state geometrical conformations and electronic transitions in the aromatic five-membered heterocyclic oligomers &ndash / oligothiophenes (nT), oligofurans (nF), and oligopyrroles (nP)- containing up to six monomer units (total of 18 molecules) were explored using several computational methodologies. Geometry optimizations were carried out at Austin Model 1 (AM1), Restricted Hartree-Fock (RHF/6-31G*), and Density Functional Theory (DFT, B3LYP/6-31G*) levels for the ground-state conformations of these structurally well-defined heterocyclic oligomers. The Configuration Interaction Singles (CIS) method with the 6-31G* basis set was chosen in computation of the optimal geometry of the lowest singlet excited state. Lowest singlet excitation S1&szlig / S0 energies were calculated using the Zerner&rsquo / s Intermediate Neglect of Differential Overlap for Spectroscopy (ZINDO/S), CIS (CIS/6-31G*), and Time-Dependent DFT (TDDFT/6-31G* and TDDFT/6-31+G*) methods. In computation of the emission S1&agrave / S0 energies, we have employed all methods above except ZINDO/S. In investigation of geometries of the ground and lowest singlet excited state, we compared the bond length alternation (BLA) parameters, Dri in the conjugated backbone of the oligomers. Saturation of the geometrical parameters at the center of oligomers was observed after a certain chain length. Among all methodologies used in computation of excitation (S1&szlig / S0) and emission (S1&agrave / S0) energies, TDDFT results showed the best agreement with experimental data. Fits of computed and experimental excitation energies to an exponential function using the least squares method enabled us to predict Effective Conjugation Length (ECL) values. We obtained the ECLs of 17 (17), 16 (15), and 14 (13) monomer units for polythiophene (PTh), polyfuran (PFu), and polypyrrole (PPr), which have very good agreement with the results obtained from the fits of experimental data (the values in parentheses).

Neste trabalho de Mestrado, foram feitos estudos do comportamento fotofísico da fisetina em diversos solventes através de medidas de absorção de luz UV-Visível, fluorescência estática e resolvida no tempo e da interação entre fisetina (3,3\',4\',7-tetrahidroxiflavona) e 7-hidroxiflavona com ciclodextrinas ( beta e gama) (CDs) através de experimentos de absorção de luz UV-Visível, sinal induzido de dicroísmo circular, fluorescência estática e resolvida no tempo, anisotropia de estado estacionário e RMN de 1H, focando a dependência destas medidas em função da temperatura e do pH. Os resultados experimentais foram comparados com estudos mecânico-quânticos baseados no modelo semi-empírico SAM1 (AMPAC), e nos funcionais B3LYP e MPW1PW91, da Teoria do Funcional de Densidade, empregando os conjuntos de funções de base 6-311G* e 3-21G**. Os estudos da fisetina em diferentes solventes próticos e apróticos mostraram que a fluorescência da sonda é fortemente dependente do solvente. Resultados experimentais indicam a formação de complexos de inclusão entre as CDs e os flavonóides acima. A fisetina com ?-CD forma complexo de estequiometria 1:1 nos meios neutro/ácido e básico, cujos valores de constante de complexação são 900 +- 100 +_ 240 +_ 90 (L/mol), respectivamente. Os dados teóricos evidenciaram que a inclusão da fisetina na beta-CD ocorre preferencialmente pelo anel fenila. O complexo com a gama-CD apresenta estequiometria de 1:1 em meio ácido/neutro e de 1:2 em meio básico, com constantes de complexação de 94 +- 30 e 130 +- 10 (L/mol), respectivamente. Os estudos com a 7-hidroxiflavona revelaram que somente ocorre a formação de complexos com a beta-CD de estequiometria 1:1 e não há dependência do pH. As constantes de complexação obtidas nos meios ácido/neutro e básico são similares, 1430 +-- 510 e 1220 +- 165 L/mol, respectivamente. / In this work, the photophysics of fisetin (3,3\',4\',7-tetrahydroxyflavone) in several solvents was studied through UV-vis absorption spectra, steady-state and time-resolved fluorescence measurements. The interaction between fisetin and 7-hydroxyflavone and cyclodextrins (b- e g-) (CDs) was also investigated by UV-vis absorption spectra, induced signal of circular dichroism, steady-state and time-resolved fluorescence, steady-state anisotropy, and 1H NMR, with dependence on pH and temperature. Some experimental data were compared with quantum-mechanics studies based on the SAM1 (AMPAC) semi-empirical model, as well as with the B3LYP and MPW1PW91 functional models from the Density Functional Theory using the 6-311G* and 3-21G* basis sets. The study of the photophysics of fisetin in protic and aprotic solvents showed a complex behavior and a strong dependence on the solvent. The occurrence of many equilibria between the possible structures of fisetin, e.g. the normal, a few deprotonated ones, and the tautomer due to the excited state intramolecular proton transfer can be responsible for the complex analyses of these experimental data. The spectroscopic measurements show that, at pH 4.0 and 6.5, the complex fisetin - b-CD is formed in a Fis:b-CD 1:1 stoichiometry and an equilibrium constant (K) of 900 ± 100 L/mol. In basic medium (pH 11.5), K decreases to 240 ± 90 L/mol. Molecular modeling points out that the inclusion complex is formed preferentially via entry of the fisetin phenyl group into b-CD. On the other hand, the fisetin - g-CD has a stoichiometry of 1:1 in acid/neutral solutions and of 1:2 in basic conditions. The K values are 94 ± 30 e 130 ± 10 (L/mol), respectively. The 7-hydroxyflavone can only form inclusion complexes with b-CD. The stoichiometry is 1:1 and there is no dependence on pH. Both equilibrium constants determined either in acid or basic medium is very similar to each other, 1430 ± 510, and 1220 ± 165 L/mol, respectively. For this reason, we suppose that the inclusion of this compound into b-CD is also through the phenyl ring of the flavonoid.

Les radiations peuvent endommager notre environnement biologique mais elles peuvent aussi être bienfaisantes si elles sont contrôlées. L'action initiale des radiations à l'échelle microscopique consiste en une excitation électronique dans une molécule. L'observation de la redistribution de l'énergie dans l'environnement de cette molécule excitée est primordiale à la compréhension et à la description de l'effet des rayonnements dans les systèmes biomoléculaires. Les agrégats de molécules isolés en phase gazeuse constituent des systèmes modèles prometteurs pour étudier les interactions entre molécules sous irradiation. La première partie de ce travail décrit la construction et la validation d'une ligne de faisceau permettant la production de paquets d'agrégats moléculaires froid injectables dans l'anneau de stockage RICE à RIKEN. La ligne de faisceau est composée d'une source electrospray, d'un filtre en masse quadripolaire, de guides d'ions d'un tube d'accélération, la pièce centrale étant un piège à ions cryogénique refroidi à 4 K. Le paquet d'ions froids, dont les ions ont été sélectionnés en masse et accélérés jusqu'à 20 keV, a été sondé avec un laser. La ligne a été validée par la mesure d'un spectre d'action du bleu de méthylène. La seconde partie de ce travail s'appuie sur les expériences réalisées auprès du dispositif d'irradiation d'agrégats moléculaires (DIAM-IPNL). La méthode COINTOF-VMI permet la mesure de la distribution de vitesse des molécules d'eau évaporées à partir d'un agrégat après collision à haute vitesse avec un atome d'argon. Les distributions de vitesse mesurées pour des agrégats mixtes pyridine protonée et eau présentent deux composantes : une partie à basse vitesse qui correspond à une évaporation après redistribution de l'énergie dans l'agrégat, et une partie à haute vitesse où la molécule d'eau est évaporée avant redistribution de l'énergie. La comparaison des résultats avec les distributions calculées par dynamique moléculaire statistique montre que la partie basse vitesse peut être interprétée comme la contribution des deux possibilités d'excitation induites par la collision : l'excitation de la pyridine protonée ou l'excitation d'une des molécules d'eau / Radiation can damage our biological environment, but it can also be beneficial under certain controlled conditions. Initial action at microscopic scale consists of electronic excitation in molecules. The redistribution of this excitation energy to the environment is the primary process to be understood to describe the radiation effect on biomolecular system. Isolated molecular clusters in gas-phase are a promising model system to study the molecular interaction under radiation.The first part of this work describes the construction and the validation of a beamline which can produce bunches of cold molecular cluster ions to be injected in the RIKEN cryogenic electrostatic (RICE} storage ring. The beamline is composed of an electrospray ion source, a quadrupole mass filter, ion guides and an acceleration tube; with the main part being a cryogenic ion trap cool down to SK. The cold ion bunches, in which the ions have been mass selected and accelerated to 20keV, was probed with a laser. The beamline was successfully taken into operation and a measurement of the methylene blue action spectrum in gas-phase was carried out. The second part of this work rely on experiment realized with the dispositif d'irradiation d'agrégats moléculaires (DIAM-IPNL}. The COINTOF-VMI method allows the measurement of the velocity distributions of evaporated molecules from a cluster after high velocity collisions with an argon atom. The velocity distribution measured for mixed clusters protonated pyridine and water has two components: a low velocity part which corresponds to the evaporation of a water molecule after energy redistribution in the cluster, and a high velocity part in which the molecule is evaporated before total energy redistribution. Comparison with the distribution calculated by statistic molecular dynamic simulation shows that the low velocity part can be interpreted as the contribution of two possible excitations induced by collision: excitation on protonated pyridine and excitation on a water molecule

Dans cette thèse, la dynamique des états excités des radicaux et biradicaux a été examinée en utilisant la spectroscopie pompe-sonde résolu en temps à l'échelle femto-seconde. Les molécules à couche ouverte jouent un rôle primordial comme intermédiaires dans les processus de combustions, dans la formation de la suie et des hydrocarbures aromatiques polycycliques, dans la chimie atmosphérique ou dans la formation des molécules organiques complexes dans le milieu interstellaire et dans les nuages galactiques. Dans tous ces processus les molécules sont souvent excitées, soit par échauffement thermique, soit par irridation. En conséquence la réactivité et la dynamique de ces états excités sont particulièrement intéressantes afin d'obtenir une compréhension globale de ces processus. Les radicaux et biradicaux ont été produits par pyrolyse à partir de molécules précurseur adaptées et ont été examinés dans un jet moléculaire dans des conditions sans collisions. Les radicaux ont ensuite été portés dans un état excité bien défini, et ionisés avec un deuxième laser. La spectrométrie de masse à temps de vol permet une première identification de la molécule qui est complété avec des spectres de photoélectrons, si le spectre de masse ne montre majoritairement qu'une seule masse. Les spectres de photoélectron ont été obtenus par l'imagerie de vitesse, permettant d'obtenir des informations sur l'état électronique au moment de l'ionisation des électrons. L'imagerie de vitesse des ions permets de distinguer des ions issu d'une ionisation directe et ceux issu d'une ionisation dissociative. Pendant cette thèse un algorithme modifié de pBasex a été développé et implémenté en python, un algorithme qui inverse des images sans interpolation des points expérimentaux. Pour des images bruitées cet algorithme montre une meilleure performance. / In this thesis the excited-state dynamics of radicals and biradicals were characterized with femto-second pump-probe spectroscopy. These open-shell molecules play important roles as combustion intermediates, in the formation of soot and polycyclic aromatic hydrocarbons, in atmospheric chemistry and in the formation of complex molecules in the interstellar medium and galactic clouds. In these processes molecules frequently occur in some excited state, excited either by thermal energy or radiation. Knowledge of the reactivity and dynamics of these excited states complete our understanding of these complex processes. These highly reactive molecules were produced via pyrolysis from suitable precursors and examined in a molecular beam under collision-free conditions. A first laser now excites the molecule, and a second laser ionizes it. Time-of-flight mass spectrometry allowed a first identification of the molecule, which was completed by the photoelectron spectrum. The photoelectron spectrum was obtained via velocity-map imaging, providing an insight in the electronic states involved. Ion velocity map imaging allowed separation of signal from direct ionization of the radical in the molecular beam and dissociative photoionization of the precursor. During this thesis a modified pBasex algorithm was developed and implemented in python, providing an image inversion tool without interpolation of data points. Especially for noisy photoelectron images this new algorithm delivers better results. / In der vorliegenden Dissertation wurde die Dynamik angeregter Zustände von Radikalen und Biradikalen mittels femtosekunden-zeitaufgelöster Anrege-Abfragespektroskopie untersucht. Radikale und Biradikale sind nicht nur wichtige Zwischenprodukte in Verbrennungsprozessen, sondern auch bei der Bildung von Ruß und polyzyklischen aromatischen Kohlenwasserstoffen beteiligt. Des Weiteren spielen sie eine wichtige Rolle in der Atmosphärenchemie und bei der Bildung komplexer Moleküle im interstellaren Medium. Von entscheidender Bedeutung ist in den genannten Prozessen die Anregung der Radikalen und Biradikale in energetisch höhere Zustände, dies geschieht entweder durch thermische Energie oder mittels Strahlung. Für das Verständnis der ablaufenden Vorgänge ist es zwingend erforderlich die Dynamik der angeregten zu verstehen. Die Radikale und Biradikale wurden dafür mittels Pyrolyse eines geeigneten Vorläufers erzeugt, und anschließend unter kollisionsfreien Bedingungen im Molekularstrahl spektroskopisch untersucht. Hierbei regt ein erster Laser das Molekül an, ein zweiter Laser ionisiert es. Mittels Flugzeitmassenspektrometrie wurden die Moleküle identifiziert, und mittels Photoelektronenspektroskopie weiter charackterisiert - unter der Bedingung, dass im Massenspektrum eine Masse dominiert. Das Photoelektronenspektrum wurde mittels Velocity-Map Imaging aufgenommen und gibt einen Einblick in den elektronischen Zustand im Augenblick der Ionisations. Die Velocity-Map Imaging-Technik von Ionen erlaubt außerdem die Unterscheidung von Ionen aus direkter Ionisation und dissoziativer Photoionisation. In diesem Rahmen wurde auch ein modifizierter pBasex-Algorithmus entwickelt und in Python implementiert. Dieser kommt im Gegensatz zum herkömmlichen pBasex-Algorithmus komplett ohne Interpolation der Datenpunkte aus. Besonders bei verrauschten Photoelektronenspektren liefert dieser Algorithmus bessere Ergebnisse.

The GERDA experiment searches for the neutrinoless double beta (0𝜈𝛽𝛽) decay of Ge-76. The observation of this decay would prove the Majorana character of the neutrino, i.e. that it is its own antiparticle. This would clarify the question which neutrino mass ordering is realized in nature and give a hint of the effective Majorana neutrino mass. Furthermore, the existence of the 0𝜈𝛽𝛽 decay would imply the violation of lepton number conservation which is a key feature in some theories explaining the asymmetry of matter and antimatter in the universe. The effective Majorana neutrino mass is connected with the half life of the 0𝜈𝛽𝛽 decay via a nuclear matrix element (NME), which is predicted by various theoretical models that are afflicted by large uncertainties. The accuracy of the different NMEs and their internal model assumptions can be increased by considering experimental investigations. While the NMEs for the 0𝜈𝛽𝛽 decay and the neutrino accompanied double beta (2𝜈𝛽𝛽) decay are numerically different, they rely on similar model assumptions. Thus, experimental constraints can be given by the 2𝜈𝛽𝛽 decay into the ground state, which has been already measured by GERDA with unprecedented precision for Ge-76, but also by the investigation of the 2𝜈𝛽𝛽 decay into excited states, which has not yet been observed for Ge-76. GERDA operates enriched germanium detectors in liquid argon (LAr) which serves as an additional background veto using the scintillation light that is created when energy is deposited in LAr. The signal signature of the decay into excited states can be enhanced with the application of the LAr veto, however, for that the efficiency of the LAr veto needs to be determined. One of the key parameters of the LAr efficiency is the attenuation of the scintillation light in LAr, which is dependent on the impurity composition and concentration in LAr. Therefore, the attenuation length of the scintillation light in LAr has been measured in GERDA with a dedicated setup in the course of this work. The analysis of the acquired data required intense computer simulations in order to describe the background for the measurement sufficiently. This also involved the measurement of the steel reflectivity in the visible and the UV region, where LAr scintillates. Therewith, the search for excited states has been performed in this work for the data accumulated in GERDA Phase I, Phase II and Phase II+ including the LAr veto for the latter two data sets. New limits have been set on the investigated excited states decay modes and some of the corresponding theoretical half life predictions could be disfavored, i.e. the underlying NMEs models can be constrained. The successor experiment LEGEND will continue searching for the 0𝜈𝛽𝛽 decay of Ge-76 using more germanium detectors together with an improved LAr veto. The investigation of the decay of Ge-76 into excited states will also be further pursued in LEGEND.

The aim of the doctoral thesis was to study advanced fluorescence techniques and its use in colloids or hyaluronan-surfactant systems and hydrogels based on hyaluronan, respectively. Steady-state and time-resolved fluorescence were used to study excited state proton transfer fluroescen probes in hyaluronan-surfactant systems to asses the influence of hyaluronan hydration to its interactions with oppositely charged surfactants. Firstly, different excited state proton transfer fluorescence probes were discussed to choose the most suitable candidate for next research. The influence of hyaluronan on inner environment of micells was determined based on the sensitivity of excited state proton transfer of chosen fluorescence probe 1-naphtol and, based on above mentioned experiments, the structure of hyaluronan hydration shell was discussed. The next part of doctoral thesis was focused on fluorescence lifetime correlation spectroscopy and on the development of method of nanorheology. Measured correlation functions were transformed to mean square displacement with developed MATLAB script. Firstly, the fluorescence method was compared with well described methods such as videomicrorheology and dynamic light scattering to asses the reliability of fluorescence correlation spectroscopy in microrheology. Secondly, nanorheology method was developed and its use in passive nanorheology of hyaluronan hydrogels was discussed. Based on mentioned experiments, the fluorescence correlation spectroscopy microrheology and nanorheology methods were optimized to use the methods in hydrogel research.

Nous étudions la dynamique d’anions hydroxyde et fluorure micro-solvatés dans un agrégat d’eau après photo-excitation. Du fait du coût numérique important des calculs ab-initio et de la faible transférabilité des potentiels modèles de la littérature, nous avons développé un nouveau modèle transférable permettant de décrire l’interaction d’un soluté quelconque avec une molécule d’eau. Nous avons également effectué une étude des propriétés statiques de F^-(H2O)n=1−7 et OH−(H2O)n=1−7 qui sert de référence pour la paramétrisation du modèle et fournit une base à l’interprétation des calculs de dynamique. De cette étude, nous avons déduit le nombre de molécules d’eau nécessaires pour stabiliser le premier état excité de F− et OH−. Nous avons aussi déterminé l’impact de la base sur la description des états excités. Enfin, nous avons mis en évidence un motif géométrique favorable à la recombinaison géminée. L’étude de trajectoires sur le premier état singulet excité pour F^-(H2O)3,5 et OH^-(H2O)3,5 montre des différences de comportement entre le fluorure et l’hydroxyde. Pour F^−, l’électron est très diffus et se transfère en une centaine de femtosecondes à l’eau. Dans le cas de OH^−, à cause du dipôle du radical OH qui maintient l’électron, le transfert de charge ne s’effectue que lorsque le radical OH tourne vers l’agrégat d’eau. Cette différence de comportement entre OH^−et F^−offre une piste pour la compréhension du phénomène de recombinaison géminée rapide observé pour OH^−. Nous avons également étudié le spectre d’énergie de détachement vertical de l’électron pour des agrégats d’eau négativement chargés qui constituent l’un des produits finaux de la dynamique des anions photo-excités. Ces résultats ont été discutés et comparés à l’expérience. Nous avons ainsi pu faire correspondre des structures géométriques aux pics des spectres mesurés expérimentalement. Nous discutons aussi du rôle de l’énergie interne des agrégats sur l’allure des spectres via son impact sur l’évaporation de molécules d’eau. / We study the dynamics of micro-solvated hydroxide and fluoride anions in water clusters after photoexcitation. Because ab-initio calculations are numerically expensive and model potentials from literature lack of transferability, we developed a transferable model, which allows us to describe the interaction between any solute and a water molecule. We have studied the statics properties of F^−(H2O)n=1−7 and OH^−(H2O)n=1−7. The results from this study serve as a basis for the parametrization of the model and for the interpretation of dynamics simulation. From this study, we deduced the number of water molecules needed to stabilize an excited state for F^−and OH^−. We investogated the impact of the basis on the description of the excited states At last, we highlight a favorable motif for geminate recombination. Study of trajectories on the first excited singlet states of F^−(H2O)3,5 and OH^−(H2O)3,5 shows differences in the dynamics between OH^−and F^− For F^−, the excess electron is very diffuse and transferred quickly to the water For OH−, because of the OH dipole, the excess electron remains bound to the neutral . OH, until charge transfer takes place when OH rotate to the water cluster. This difference provides a way to understand the fast geminate recombination process observed for OH^−. We also studied vertical detachment spectra of the electron for negatively charged water clusters which are the final products of the anions dynamics on the first excited state. These results are compared to experience from literature. We associate isomers to the experimentally observed peaks. We discuss the effect of internal energy on the shape of the spectra through water molecules evaporation

No description available.