Les peignes de longueurs d'onde, produisant des dizaines de porteuses optiques régulièrement espacées à partir d'une seule source laser, présentent un grand intérêt pour les systèmes de communication à haut débit. Ce travail de thèse porte sur les peignes générés par les diodes laser à blocage de modes basées sur des nanostructures semi-conductrices à basse dimensionnalité. Dans cette étude, les performances en verrouillage de modes de lasers Fabry-Pérot mono-section basés sur différents systèmes de matériaux sont comparées sur la base de la largeur du spectre optique d'émission et de la capacité à produire des impulsions courtes à faible gigue temporelle. En remarquant que les lasers à base de bâtonnets quantiques InAs sur InP présentent de meilleures caractéristiques par rapport aux autres matériaux examinés, leurs propriétés spécifiques en termes de stabilité des peignes de fréquences optiques et de chirp des impulsions sont étudiées plus en détail. Le chirp est d'abord étudié par la technique FROG (frequency-resolved optical gating). Ensuite, la dispersion chromatique du matériau laser est évaluée afin de vérifier si elle peut expliquer les grandes valeurs de chirp mesurées par FROG. Pour cela la technique de réflectométrie optique dans le domaine fréquentiel est utilisée et ses capacités uniques de mesure ont été étudiées et validées. Enfin, ces lasers sont employés avec succès pour les transmissions haut débit à l'aide de la technique de modulation optique OFDM (orthogonal frequency-division multiplexing) en détection directe. Débits de l'ordre du térabit par seconde, ainsi que le faible coût de l’architecture du système, sont très prometteurs pour les data centers / Optical frequency combs, generating tens of equally spaced optical carriers from a single laser source, are very attractive for next-generation wavelength division multiplexing (WDM) communication systems. This PhD thesis presents a study on the optical frequency combs generated by mode-locked laser diodes based on low-dimensional semiconductor nanostructures. In this work, the mode-locking performances of single-section Fabry-Pérot lasers based on different material systems are compared on the basis of the optical spectrum width, the timing jitter and pulse generation capabilities. Then, noticing that InAs quantum dashes grown on InP exhibit on average better characteristics than other examined materials, their unique properties in terms of comb stability and pulse chirp are studied in more detail. Laser chirp, in particular, is first investigated by frequency resolved optical gating (FROG) characterizations. Then, chromatic dispersion of the laser material is assessed in order to verify whether it can account for the large chirp values measured by FROG. For that, a high sensitivity optical frequency-domain reflectometry setup is used and its measurement capabilities are extensively studied and validated. Finally, the combs generated by quantum dash mode-locked lasers are successfully employed for high data rate transmissions using direct-detection optical orthogonal frequency division multiplexing. Terabit per second capacities, as well as the low cost of this system architecture, appear to be particularly promising for future datacom applications

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Die elektrische Signalverarbeitung in Nervenzellen basiert auf deren erregbarer Zellmembran. Üblicherweise wird angenommen, dass die in der Membran eingebetteten leitfähigen Ionenkanäle nicht auf direkte Art gekoppelt sind und dass die Kapazität des von der Membran gebildeten Kondensators konstant ist. Allerdings scheinen diese Annahmen nicht für alle Nervenzellen zu gelten. Im Gegenteil, verschiedene Ionenkanäle “kooperieren” und auch die Vorstellung von einer konstanten spezifischen Membrankapazität wurde kürzlich in Frage gestellt. Die Auswirkungen dieser Abweichungen auf die elektrischen Eigenschaften von Nervenzellen ist das Thema der folgenden kumulativen Dissertationsschrift. Im ersten Projekt wird gezeigt, auf welche Weise stark kooperative spannungsabhängige Ionenkanäle eine Form von zellulärem Kurzzeitspeicher für elektrische Aktivität bilden könnten. Solche kooperativen Kanäle treten in der Membran häufig in kleinen räumlich getrennte Clustern auf. Basierend auf einem mathematischen Modell wird nachgewiesen, dass solche Kanalcluster als eine bistabile Leitfähigkeit agieren. Die dadurch entstehende große Speicherkapazität eines Ensembles dieser Kanalcluster könnte von Nervenzellen für stufenloses persistentes Feuern genutzt werden -- ein Feuerverhalten von Nutzen für das Kurzzeichgedächtnis. Im zweiten Projekt wird ein neues Dynamic Clamp Protokoll entwickelt, der Capacitance Clamp, das erlaubt, Änderungen der Membrankapazität in biologischen Nervenzellen zu emulieren. Eine solche experimentelle Möglichkeit, um systematisch die Rolle der Kapazität zu untersuchen, gab es bisher nicht. Nach einer Reihe von Tests in Simulationen und Experimenten wurde die Technik mit Körnerzellen des *Gyrus dentatus* genutzt, um den Einfluss von Kapazität auf deren Feuerverhalten zu studieren. Die Kombination beider Projekte zeigt die Relevanz dieser oft vernachlässigten Facetten von neuronalen Membranen für die Signalverarbeitung in Nervenzellen. / Electrical signaling in neurons is shaped by their specialized excitable cell membranes. Commonly, it is assumed that the ion channels embedded in the membrane gate independently and that the electrical capacitance of neurons is constant. However, not all excitable membranes appear to adhere to these assumptions. On the contrary, ion channels are observed to gate cooperatively in several circumstances and also the notion of one fixed value for the specific membrane capacitance (per unit area) across neuronal membranes has been challenged recently. How these deviations from the original form of conductance-based neuron models affect their electrical properties has not been extensively explored and is the focus of this cumulative thesis. In the first project, strongly cooperative voltage-gated ion channels are proposed to provide a membrane potential-based mechanism for cellular short-term memory. Based on a mathematical model of cooperative gating, it is shown that coupled channels assembled into small clusters act as an ensemble of bistable conductances. The correspondingly large memory capacity of such an ensemble yields an alternative explanation for graded forms of cell-autonomous persistent firing – an observed firing mode implicated in working memory. In the second project, a novel dynamic clamp protocol -- the capacitance clamp -- is developed to artificially modify capacitance in biological neurons. Experimental means to systematically investigate capacitance, a basic parameter shared by all excitable cells, had previously been missing. The technique, thoroughly tested in simulations and experiments, is used to monitor how capacitance affects temporal integration and energetic costs of spiking in dentate gyrus granule cells. Combined, the projects identify computationally relevant consequences of these often neglected facets of neuronal membranes and extend the modeling and experimental techniques to further study them.

Computational methods, including homology modelling, in-silico dockings, and molecular dynamics simulations have been used to study the functional dynamics and interactions of K⁺ channels. Molecular models were built of the inwardly rectifying K⁺ channel Kir2.2, the bacterial homolog K⁺ channel KirBac3.1, and the twin pore (K2P) K⁺ channels TREK-1 and TRESK. To investigate the electrostatic energy profile of K⁺ permeating through these homology models, continuum electrostatic calculations were performed. The primary mechanism of KirBac3.1 gating is believed to involve an opening at the helix bundle crossing (HBC). However, simulations of Kir channels have not yet revealed opening at the HBC. Here, in simulations of the new KirBac3.1-S129R X-ray crystal structure, in which the HBC was trapped open by the S129R mutation in the inner pore-lining helix (TM2), the HBC was found to exhibit considerable mobility. In a simulation of the new KirBac3.1-S129R-S205L double mutant structure, if the S129R and the S205L mutations were converted back to the wild-type serine, the HBC would close faster than in the simulations of the KirBac3.1-S129R single mutant structure. The double mutant structure KirBac3.1-S129R-S205L therefore likely represents a higher-energy state than the single mutant KirBac3.1-S129R structure, and these simulations indicate a staged pathway of gating in KirBac channels. Molecular modelling and MD simulations of the Kir2.2 channel structure demonstrated that the HBC would tend to open if the C-linker between the transmembrane and cytoplasmic domain was modelled helical. The electrostatic energy barrier for K⁺ permeation at the helix bundle crossing was found to be sensitive to subtle structural changes in the C-linker. Charge neutralization or charge reversal of the PIP2-binding residue R186 on the C-linker decreased the electrostatic barrier for K⁺ permeation through the HBC, suggesting an electrostatic contribution to the PIP2-dependent gating mechanism. Multi-scale simulations determined the PIP2 binding site in Kir2.2, in good agreement with crystallographic predictions. A TREK-1 homology model was built, based on the TRAAK structure. Two PIP2 binding sites were found in this TREK-1 model, at the C-terminal end, in line with existing functional data, and between transmembrane helices TM2 and TM3. The TM2-TM3 site is in reasonably good agreement with electron density attributed to an acyl tail in a recently deposited TREK-2 structure.

Les ataxies épisodiques (EA) d’origine génétique sont un groupe de maladies possédant un phénotype et génotype hétérogènes, mais ont en commun la caractéristique d’un dysfonctionnement cérébelleux intermittent. Les EA de type 1 et 2 sont les plus largement reconnues des ataxies épisodiques autosomiques dominantes et sont causées par un dysfonctionnement des canaux ioniques voltage-dépendants dans les neurones. La présente étude se concentrera sur les mutations causant l'EA-1, retrouvées dans le senseur de voltage (VSD) de Kv1.1, un canal très proche de la famille des canaux Shaker. Nous avons caractérisé les propriétés électrophysiologiques de six mutations différentes à la position F244 et partiellement celles des mutations T284 A/M, R297 K/Q/A/H, I320T, L375F, L399I et S412 C/I dans la séquence du Shaker grâce à la technique du ‘’cut open voltage clamp’’ (COVC). Les mutations de la position F244 situées sur le S1 du canal Shaker sont caractérisées par un décalement des courbes QV et GV vers des potentiels dépolarisants et modifient le couplage fonctionnel entre le domaine VSD et le pore. Un courant de fuite est observé durant la phase d'activation des courants transitoires et peut être éliminé par l'application du 4-AP (4-aminopyridine) ou la réinsertion de l'inactivation de type N mais pas par le TEA (tétraéthylamonium). Dans le but de mieux comprendre les mécanismes moléculaires responsables de la stabilisation d’un état intermédiaire, nous avons étudié séparément la neutralisation des trois premières charges positives du S4 (R1Q, R2Q et R3Q). Il en est ressorti l’existence d’une interaction entre R2 et F244. Une seconde interface entre S1 et le pore proche de la surface extracellulaire agissant comme un second point d'ancrage et responsable des courants de fuite a été mis en lumière. Les résultats suggèrent une anomalie du fonctionnement du VSD empêchant la repolarisation normale de la membrane des cellules nerveuses affectées à la suite d'un potentiel d'action. / The genetic episodic ataxias form a group of disorders with heterogeneous phenotype and genotype, but share the common feature of intermittent cerebellar dysfunction. Episodic ataxia (EA) types 1 and 2 are most widely recognised amongst the autosomal dominant episodic ataxias and are caused by dysfunction of neuronal voltage-gated ion channels. The present study focuses on mutations causing EA-1 located in the voltage sensor domains (VSDs) of Kv1.1. A member of the Shaker channel family. Here, we have characterised the electrophysiological properties of six different mutations at the position of F244 and we also reported the partiality effects of these following mutations T284A/M, R297K/Q/A/H, I320T, L375F, L399I S412C/I on Shaker sequence using the cut open voltage clamp technique (COVC). We have shown that mutations of F244 in the S1 of the Shaker Kv channel positively shift the voltage dependence of the VSD movement and alter functional coupling between VSD and pore domain. The mutations causing immobilization of the VSD movement during activation and deactivation and responsible for creating a leak current during activation, are removed by the application of 4-AP (4-aminopyridine) or by reinsertion of N-type inactivation but not by TEA (tetraethylamonium). Insights into the molecular mechanisms responsible for the stabilization of the intermediate state have been investigated by separately neutralizing the first three charges (R1Q, R2Q and R3Q) in the S4 segment. The result suggests an interaction between R2 and F244 mutants. It was established that a second co-evolved interface exists between S1 and the pore helix near the extracellular surface and it acts as a second anchor point. It is also responsible for generation of leak currents. The results suggest a dysfunction of the VSD in which the affected nerve cells cannot efficiently repolarize following an action potential because of altered delayed rectifier function

L’objectif de cette thèse a été de développer des outils d’exploration des modifications perceptuelles lors de l’écoute de sons complexes dans la schizophrénie et de confronter les résultats de ces outils à des données neurophysiologiques. Le premier résultat de notre thèse est d’avoir confirmé dans la modalité auditive des modifications de l’organisation perceptuelle lors de l’écoute de sons complexes. En effet, nous avons montré, chez les patients souffrant de schizophrénie comparativement aux témoins, d’une part une difficulté de catégorisation des sons environnementaux de type son d’impact, et d’autre part, une modification de la perception de la familiarité et de la bizarrerie pour des sons environnementaux et abstraits, indiquant une modification d’organisation des données de l’audition dans une forme univoque et consensuelle.Le deuxième résultat de notre thèse est d’avoir confirmé, par une méthode d’induction perceptuelle consistant à présenter des stimuli plus ou moins envahissants, la présence d’un sentiment d’envahissement perceptuel plus important chez les patients souffrants de schizophrénie comparativement aux témoins. Cet envahissement perceptuel était corrélé significativement avec une mesure neurophysiologique du filtrage sensoriel par potentiels évoqués dans le paradigme des doubles clics audio (diminution d’amplitude de la composante P50 au deuxième stimulus comparativement au premier stimulus). Nous avons également traduit et validé en langue française un auto-questionnaire appelé Sensory Gating Inventory (SGI) permettant de compléter l’évaluation psychophysiologique des modifications perceptuelles reliées aux anomalies du filtrage sensoriel. / The aim of this PhD was to develop tools for analyzing perceptual modifications induced by complex sounds in schizophrenia and to relate these changes to neurophysiological data. The first result of our work enabled to confirm that complex sounds modify the auditory perceptual organization. Indeed, we first showed a deficit of categorization of environmental sounds (impact sounds) in patients with schizophrenia compared with controls, and secondly a difference in the perception of familiarity and strangeness for environmental and abstract sounds, indicating a modification of data organization of hearing in a unique and consensual form.The second result of our work revealed, by a perceptual induction method, the presence of a larger perceptual sense of inundation in patients suffering from schizophrenia compared with controls when submitted to more or less invasive stimuli. This perceptual inundation was significantly correlated with a neurophysiological measurement of sensory gating with evoked responses in the paradigm of double audio clicks (decrease in amplitude of the P50 component after the second stimulus as compared to the first stimulus). We have also translated a self-administered questionnaire called “Sensory Gating Inventory” (SGI) to French and validated it in order to complete the psychophysiological assessment of perceptual changes related to abnormal sensory gating.

L'imagerie par Résonance Magnétique (IRM) cardiaque est un domaine qui nécessite d'adapter la séquence au rythme du coeur, afin d'éviter le flou causé par un temps d'acquisition long devant les constantes de temps du mouvement. Ainsi, les temps séparant les impulsions radio-fréquence (RF) de la séquence sont aussi variables que les durées des cycles cardiaques sur lesquels on synchronise l'acquisition. Cela est cause d'imprécision sur l'image résultante, en particulier dans son caractère quantitatif. L'aimantation des spins n'est effectivement pas dans un état d'équilibre sur toute l'acquisition. La thèse présente deux axes principaux de recherche explorés ; le premier est une étude de l'impact de la variation du rythme cardiaque (présentée en outre dans le manuscrit) sur la mesure quantitative du temps de relaxation transversal T2. L'étude a été menée sur des objets fantômes et sur des volontaires sains. Deux méthodes de correction de la variation du rythme sont proposées, l'une basée sur la correction du signal au centre de l'espace de Fourier, l'autre basée sur une approche de reconstruction généralisée. Les résultats préliminaires sont encourageants, et des travaux ultérieurs seraient à entreprendre pour confirmer l'efficacité de ces méthodes. Ensuite, les variations temporelles du cycle cardiaque sont traitées à l'échelle d'un cycle, et nous proposons une méthode de mise en coïncidence des différents segments de l'électrocardiogramme (ECG) basée sur la déformation de l'ECG dans l'IRM probablement par effet magnétohydrodynamique. Cette méthode est mise au service de l'imagerie dans le cadre d'une séquence cinétique CINE dans laquelle une meilleure mise en correspondance des segments de cycles cardiaques successifs devrait permettre de gagner en qualité d'image, à condition d'avoir des résolutions spatiale et temporelle suffisamment fines. Les résultats apportés au cours de cette thèse sont préliminaires à de futures recherches nécessaires dans le domaine temporel de la séquence, beaucoup moins traité que le mouvement des organes / Cardiac Magnetic Resonance Imaging (MRI) requires to adapt the sequence to heart rate, so as to avoid the blur caused by the acquisition time longer than motion time constants. Thus, times between sequence radiofrequency pulses are as much variable as synchronization cardiac cycles durations. It causes imprecision on the resulting image, particularly for quantification. In fact, spins magnetization is not in a steady state during the acquisition. Two main research axis are presented in this thesis; the first one is a study of the impact of heart rate variation (described in the manuscript) on the transversal relaxation time T2 quantitative measurement. The study was lead on both phantom objects and on healthy volunteers. Two correction methods for heart rate variation are proposed, one based on the correction of the signal of the central line of the k-space, the other one based on a generalized reconstruction approach. First results are encouraging, and further works should be lead to confirm the methods efficacity. Then, heart rate variations are treated inside the cardiac cycle, and we propose a method to match the different segments of the electrocardiogram (ECG), based on the ECG deformation in the MR scanner probably due to by magnetohydrodynamic effect. This method is applied on imaging with a CINE kinetic sequence in which a better successive cardiac cycles segments matching should enable to improve image quality, at the condition to have sharp enough spatial and temporal resolutions. Results brought in this thesis are preliminary to necessary future researches in the sequence time domain, largely less addressed than organ motion

Ion channels are fundamental molecules in the nervous system that catalyze the flux of ions across the cell membrane. There are mounting evidences suggesting that the kinetic properties of ion channels undergo activity-dependent changes in various pathophysiological conditions. Here such activity-dependent changes were studied in case of two different ion channels; the rat brain derived voltage-gated Na+ channel, rNav1.2 and the human background leak K+ channel, hTREK1 using the single channel patch-clamp technique. Our results on the voltage-gated Na+ channel (Chapter III) illustrated that sustained membrane depolarization, as seen in pathophysiological conditions like epilepsy, induced a defined non-linear variation in the unitary conductance, activation, inactivation and recovery kinetic properties of the channel. Signal processing tools attributed a pseudo-oscillatory nature to the non-linearity observed in the channel properties. Prolonged membrane depolarization also induced a “molecular memory” phenomenon, characterized by clustering of dwell time events and strong autocorrelation in the dwell time series. The persistence of such molecular memory was found to be dependent on the duration of depolarization. Similar plastic changes were observed in case of the hTREK1 channel in presence of saturating concentrations of agonist, trichloroethanol (TCE) (Chapter IV). TREK1 channel behaves similar to single enzyme molecules with a single binding site for the substrate K+ ion whereas TCE acts as an allosteric activator of the channel. We observed that with increasing concentration of TCE (10 M to 10 mM) the catalytic turnover rate exhibited progressive departure from monoexponential to multi-exponential distribution suggesting the presence of ‘dynamic disorder’ analogous to single enzyme molecules. In addition, we observed the induction of strong correlation in successive waiting times and flux intensities, exemplified by distinct mode switching between high and low flux activity, which implied the induction of memory in single ion channel. Our observation of such molecular memory in two different ion channels in different experimental conditions highlights the importance and generality of the phenomenon which is normally hidden under the ensemble behaviour of ion channels. In the final part of the work (chapter V) we observed strong negative cooperativity and half-of-sites saturation kinetics in the interaction of local anesthetic, lidocaine with hTREK1 channel. We also mapped the specific anesthetic binding site in the c-terminal domain of the channel. Further, single channel analysis and the heterodimer studies enabled us to propose a model for this interaction and provide a plausible paradigm for the inhibitory action of lidocaine on hTREK1.

The process of respiration is a pattern of spontaneity and automatic motor control that originate in the brainstem. The mechanism by which the brainstem detects CO2 is termed central CO2 chemoreception (CCR). Since the early 1960’s there have been tremendous efforts placed on identification of central CO2 chemoreceptors (molecules that detect CO2). Even with these efforts, what a central CO2 chemoreceptor looks like remain unknown. To test the hypothesis that inward rectifier K+ (Kir) channels are CO2 sensing molecules in CCR, a series of experiments were carried out. 1) The first question asked was whether the Kir4.1-Kir5.1 channel is expressed in brainstem chemosensitive nuclei. Immunocytochemistry was performed on transverse medullary and pontine sections using antibodies raised against Kir4.1 and Kir5.1. Positive immunoassays for both Kir4.1 and Kir5.1 subunits were found in CO2 chemosensitive neurons. In the LC the Kir4.1 and Kir5.1 were co-expressed with the neurokinin-1 receptor that is the natural receptor for substance P. 2) The second question asked was whether the Kir4.1-Kir5.1 channel is subject to modulation by neurotransmitters critical for respiratory control. My studies demonstrated that indeed the Kir4.1-Kir5.1 channel is subject to modulation by substance P, serotonin and thyrotropin releasing hormone. 3) I performed studies to demonstrate the intracellular signaling system underlying the Kir4.1-Kir5.1 channel modulation by these neurotransmitters. The modulation by all three neurotransmitters was dependent upon the activation of protein kinase C (PKC). The Kir4.1-Kir5.1 but not the Kir4.1 channel was modulated by PKC. Both the Kir4.1 and Kir5.1 subunits can be phosphorylated by PKC in vitro. However, systematic mutational analysis failed to reveal the phosphorylation site. 4) The fourth question asked was whether Kir channels share a common pH gating mechanism that can be identified. Experiments were performed to understand the gating of the Kir6.2+SUR1 channel as specific sites for ligand binding and gating have been demonstrated. I identified a functional gate that was shared by multiple ligands that is Phe168 in the Kir6.2. Other Kir channels appear to share a similar gating mechanism. Taken together, these studies demonstrate the modulation of Kir channels in central CO2 chemoreception.

We demonstrate four experimentally simple methods for measuring very complex ultrashort light pulses. Although each method is comprised of only a few optical elements, they permit the measurement of extremely complex pulses with time-bandwidth products greater than 65,000. First, we demonstrate an extremely simple frequency-resolved-optical gating (GRENOUILLE) device for measuring the intensity and phase of pulses up to ~20ps in length. In order to achieve the required high spectral resolution and large temporal range, it uses a few-cm-thick second harmonic-generation crystal in the shape of a pentagon. This has the additional advantage of reducing the device's total number of components to three. Secondly, we introduce a variation of spectral interferometry (SI) using a virtually imaged phased array and grating spectrometer for measuring long complex ultrashort pulses up to 80 ps in length. Next, we introduce a SI technique for measuring the complete intensity and phase of relatively long and very complex ultrashort pulses. It involves making multiple measurements using SI (in its SEA TADPOLE variation) at numerous delays, measuring many temporal pulselets within the pulse, and concatenating the resulting pulselets. Its spectral resolution is the inverse delay range--many times higher than that of the spectrometer used. The waveforms were measured with ~ fs temporal resolution over a temporal range of ~ns and had time-bandwidth products exceeding 65,000, which to our knowledge is the largest time-bandwidth product ever measured with ~fs temporal resolution. Finally, we demonstrate a single-shot measurement technique that temporally interleaves hundreds of measurements with ~fs temporal resolution. It is another variation of SI for measuring the complete intensity and phase of relatively long and complex ultrashort pulses in a single shot. It uses a grating to introduce a transverse time delay into a reference pulse which gates the unknown pulse by interfering it at the image plane of an imaging spectrometer. It provided ~125 fs temporal resolution and a temporal range of 70 ps using a low-resolution spectrometer.