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Acute myeloid leukemia (AML) is an aggressive malignancy of the hematopoietic system, characterized by the accumulation of abnormally differentiated blast cells that is driven by leukemic stem cells (LSCs). In murine AML, Musashi-2 (MSI2), an RNA-binding protein and positive regulator of stemness, has been implicated in the propagation of disease. While its enhanced expression correlated with poor disease outcome for human AML patients, no study has yet examined its actual functional role in human leukemia. In normal human hematopoietic stem cells (HSCs), we have recently reported the inhibitory effects of MSI2 on the pro-differentiative aryl hydrocarbon receptor (AHR) signaling pathway as a mechanism for promoting self-renewal in HSCs. We hypothesized that elevated MSI2 is critical for maintenance of human AML and promotes unrestrained self-renewal of LSCs in part through constitutive repression of AHR signaling. Our work aimed to unravel the relationship between MSI2 and AHR in the human leukemic context and to determine if activation of AHR signaling can promote differentiation. Results confirmed that MSI2 is preferentially expressed in primary patient LSCs and is negatively correlated with the expression of AHR gene targets. Upon lentiviral knockdown of MSI2 in-vitro and in-vivo, leukemic growth was compromised and increased AHR signaling was observed. Circumventing the inhibitory role of MSI2 in AML, activation of AHR with a potent agonist impaired leukemic progenitor activity and proliferation. In-vivo studies employing reconstitution of immunodeficient mice with primary AML samples showed impairment of AML engraftment for a significant proportion of tested samples upon treatment with an AHR agonist. Overall, our findings from this project indicated that MSI2 is required for human AML propagation and that a decrease in MSI2 inhibitory effects on AHR signaling or direct activation of the AHR signaling pathway via a potent agonist can promote AML cell differentiation and loss. / Thesis / Master of Science (MSc) / The human blood system is sustained by a population of blood stem cells that are tightly regulated in their production of stem and differentiated cells. The Musashi-2 (MSI2) protein is a key regulator of blood stem cell identity through its inhibition of the aryl hydrocarbon receptor (AHR) signaling pathway. When there is dysregulation of blood cell homeostasis, blood malignancies such as acute myeloid leukemia (AML) may arise. In this work, the relationship between MSI2 and the AHR signaling pathway was explored within a myeloid leukemic context. It was shown that MSI2 imposes inhibitory effects on AHR to promote disease progression and that its reduction could help alleviate disease burden. Additionally, it was found that activation of the AHR signaling pathway could overcome the MSI2 differentiation block to create a therapeutic effect. Overall, the results of this project shed light on novel therapeutic strategies and targets for the treatment of AML.

Yes / A detailed steady-state catalytic-reforming unit (CRU) reactor process model is simulated in this work, and for the first time, different compressibility Z factor correlations have been applied using gPROMS software. The CRU has been modeled and simulated with the assumption that the gas phase behaves like an ideal gas. This is assumed for the four reactors in series and for different conditions of hydrogen–hydrocarbon ratio (HHR), operating temperature, and pressure. The results show that the Z factor varies at every point along the height of the reactors depending on reaction operating pressure, temperature, and HHR ratio. It also shows that the magnitude of deviation from ideal gas behaviour can be measured over the reactor height. The Z factor correlation of Mahmoud (J Energy Resour Technol Trans ASME 136:012903, 2014) is found to be suitable for predicting the Z factor distribution in the reactors.

The depletion of conventional oil reservoirs forced companies and consequently researchers to pursue alternatives such as resources that in the past were considered not economically viable, in consequence of the high depth, low porosity and permeability of the play zone. The exploration challenges were overcome mainly by the development of horizontal drilling and hydraulic fracturing. However, the extremely high temperatures and pressures, in association to a complex nanopore structure, in which reservoir fluids are now encountered, instigate further investigation of fluid phase behavior and composition, and challenge conventional macroscale reservoir simulation predictions. Moreover, the unusual high temperatures and pressures have increased the cost as well as the hazardous level for reservoir analyzes by lab experiments. Molecular Dynamics (MD) simulation of reservoirs can be a safe and inexpensive alternative tool to replicate reservoir pore and fluid conditions, as well as to monitor fluid behavior. In this study, a MD simulation of nanoconfinement effect on hydrocarbon fluid phase and compositional behavior in organic shale rocks is presented. Chapter 1 reviews and discusses previous works on MD simulations of geological resources. With the knowledge acquired, a fully atomistic squared graphite pore is proposed and applied to study hydrocarbon fluid phase and compositional behavior in organic shale rocks in Chapter 2. Results demonstrate that nano-confinement increases fluid mass density, which can contribute to phase transition, and heptane composition inside studied pores. The higher fluid density results in an alteration of oil in place (OIP) prediction by reservoir simulations, when nano-confinement effect is not considered. / Master of Science / Petroleum sub products are present in the day to day life of almost any human. The list include gasoline, plastics, perfumes, medications, polyester for clothing. Petroleum is naturally encountered in the void space, known as pores, inside rocks at reservoirs thousands of feet underground. In the past, the pores of oil reservoirs in development were larger and interconnected, which facilitates its extraction and reserve predictions. Most of reservoirs being developed nowadays have pores in the nanoscale and with poor interconnection as well as higher reservoir temperatures and pressure. These "new conditions", instigates further investigation of fluid phase behavior and composition, and challenge macroscale reservoir simulation predictions. In this study, the effect of decrease in pore size, as well as higher temperature and pressure conditions, in fluid behavior and composition is studied. Chapter 1 reviews and discusses previous works on geological resources modeling and simulation. With the knowledge acquired, a fully squared shale pore is proposed and applied to study hydrocarbon fluid phase and compositional behavior in organic shale rocks in Chapter 2. Results demonstrate that pores in the nanoscale region tend to increase fluid mass density, which can contribute to phase transition, and heptane composition inside studied pores. The higher fluid density results in an underestimation of reserves prediction by reservoir simulations, when the change in density is not considered.

Two types of oily waste sludges generated by a railroad maintenance facility were studied to reduce the volume of hydrocarbon waste. The specific goals of this laboratory study were to evaluate rate and extent of microbial degradation, benefits of organism addition, role of biosurfactant, and dewatering properties. The oily waste sludges differed in characteristics and contained a mixture of water, motor oil, lubricating oil, and other petroleum products. Degradation was measured using COD, suspended solids, GC measurements of extractable material, and nonextractable material concentration. Biosurfactant production was characterized using surface tension and polysaccharide measurements. Degradation of ten percent waste oil showed that the removal in a 91 day experiment was 75 percent for COD and suspended solids, 98 percent for extractable oil, and negligible for non-extractable material. It was concluded that methylene chloride extraction could be used to estimate degradation potential of a hydrocarbon waste. Addition of organisms increased the rate and extent of degradation over 22 days, but did not provide any benefits over 91 days. Data suggested that microorganisms degraded simple compounds first, then produced biosurfactants. It was thought that the biosurfactants remained attached to the organism membrane and increased solubility, stimulating the degradation of difficult to degrade waste oil. After oil was degraded the biosurfactants became ineffective. The dewatering properties of 10 percent oily sludge deteriorated with the production of biosurfactant and improved after the surfactant was degraded due to changes in oil solubility. / Master of Science

BACKGROUND: Perfluorinated compounds (PFCs) have been used as durable water and oil repellent treatments in clothing for more than 50 years. The reason for its popularity is related to the chemical structure, which also makes these compounds persistent in the environment. Numerous studies have shown negative environmental and health effects related to high concentrations of perfluorinated compounds in blood serum. Due to these studies, this paper aimed to find out if perfluorinated compounds could be replaced by non-perfluorinated without compromising performance related to water and oil repellency. METHODOLOGY: A reference sample impregnated with fluorocarbons was compared with the following non-perfluorinated treatments, aliphatic polyurethane (comb polymer) organic silicone and acid (comb polymer) and hydrocarbon (dendrimer). Impregnations were subjected to abrasion, UV-radiation and washing and after each destructive treatment; oil and water repellency tests were conducted. The environmental and health effect of all treatments were examined in a theoretical study. RESULTS: Due to difficulties with the impregnation process, comparable results could only be concluded with the perfluorinated and the hydrocarbon compound. The hydrocarbon was superior the perfluorinated compound to abrasion but for usage simulation methods that allowed chemical reactions, hence UV-radiation and washing, the fluorocarbons showed better resistance. CONCLUSION: Results show that the hydrocarbon treatment could replace perfluorinated treatments commercially when only water and not oil repellency is required. The alternative treatments in this study are not yet sufficiently examined with respect to environmental and health and can therefore not be called greener with certainty. / Program: Textilingenjörsutbildningen

The rapid urbanization and industrialization has led to an increase of disposal petroleum hydrocarbons (PHC) and trace elements (TE) into the environment. These pollutants are considered as the most toxic contaminants in the world due to their persistence in the environment, and the long range of toxicological effects for living beings when their concentrations exceed critical thresholds. Recent concerns regarding the environmental contamination have initiated the development of several remediation technologies, including physico-chemical, biological and Dig and Dump approaches. In my thesis, gentle soil remediation options (GRO) were investigated at different scales for the reclamation of PHC and TE co-contaminated soil. In the first part of my thesis, laboratory experiments were performed to characterize PHC and TE contaminated soil as well as the indigenous microorganisms (bacteria and fungi) present in these contaminated soils. It was found that the studied aged contaminated soil had a negative effect on earthworm’s development and Lepidium sativum biomass. Moreover, a high respiration of microorganisms attributed to the transformation/ mineralization of organic matter or/and organic pollutants was observed. This presence of viable microorganisms suggested an adaptation of microorganisms to the contaminant. Further results showed that the long-term exposure of soil microorganisms to high PHC concentration and the type of isolation culture media did not influence the ability of isolates to effectively degrade PHC. However, phylogenic affiliation had a strong effect on PHC biodegradation. In the second part of my thesis, preliminary studies in greenhouse trials were performed to investigate the ability of Medicago sativa assisted by compost in the greenhouse aided-phytoremediation of PHC and TE. The results clearly showed that compost amendment into the soil promoted PHC degradation, M. sativa growth and survival, and phytoextraction of TE. Residual risk assessment after the phytoremediation trial also showed a positive effect of compost amendment on plant growth and earthworm development. Pilot-scale ecopile experiment carried out in the third part of this thesis allow a reduction of up to 80% of PHC and 20% of metals after 17 months. My thesis showed that alfalfa (M. sativa) and sunflower (Helianthus annus) plants were suitable for phytodegradation of PHC and phytoextraction of TE. The outcomes of my thesis can be extend to other plants and they bring a new level of understanding that can be helpful for further full-scale phytoremediation studies. / L'urbanisation rapide et les activités industrielles ont abouti à la contamination de l’environnement par les hydrocarbures pétroliers (HP) et les éléments traces (ET). Ces composés sont particulièrement toxiques en raison de leur persistance dans l'environnement, et de leurs effets toxicologiques sur les êtres vivants quand les concentrations de ceux-ci dépassent des seuils critiques. Les préoccupations de plus en plus croissantes sur la contamination de l'environnement ont favorisé le développement de plusieurs technologies de remédiation des sites contaminés par les approches biologiques, physico-chimiques et par l’excavation et l’entreposage. Dans cette thèse, des options douces d'assainissement des sols (ODA) ont été utilisées à différentes échelles pour la remédiation des sols contaminés par des mélanges des HP et des ET. Dans la première partie de ma thèse, des expériences en laboratoire ont été effectuées dans le but de caractériser les sols contaminés et les micro-organismes autochtones (bactéries et champignons) qu’ils contiennent. Malgré la contamination ancienne du sol, les résultats obtenus montrent des effets négatifs des contaminants sur le développement des lombrics et la biomasse de Lepidium sativum. En outre, une respiration élevée de microorganismes, attribuée à la transformation / minéralisation de la matière organique et / ou des polluants organiques a été observée. Cette présence de micro-organismes viables dans les sols contaminés suggère leur adaptation aux contaminants. Toutefois, d'autres résultats ont montré que l'exposition à long terme des microorganismes du sol à de fortes concentrations en HP et le type de milieu de culture utilisé pour l'isolation n'influencent pas la capacité des isolats microbiens à dégrader efficacement les HP. Cette capacité de biodégradation des HP est liée à la phylogénie des microorganismes. Dans la deuxième partie de cette thèse, les études préliminaires en serre ont été réalisées dans le but d’évaluer l’efficacité de phytoremédiation en utilisant Medicago sativa assistée par l’ajout du compost. Les résultats ont montré dans cette expérience que l’ajout du compost dans le sol favorise la dégradation des HP, la croissance et la survie de M. sativa, ainsi que la phytoextraction des ET. L’évaluation des risques résiduels après la phytoremédiation a également montré un effet positif de l'amendement du sol en compost sur la croissance des plantes et le développement des lombrics. L’expérience pilote réalisée sur le terrain dans la troisième partie de ma thèse a permis une réduction de 80% des HP et de 20% des ET après 17 mois. Ma thèse a démontré que la luzerne (M. sativa) et le tournesol (Helianthus annus) sont des choix judicieux de plantes pour la phytodégradation des HP et pour la phytoextraction des ET. Les résultats qui en résultent sont utiles pour d’autres études de phytoremédiation à grande échelle. / Den snabba urbaniseringen och industrialiseringen har lett till en ökning av petroleumkolväten (PHC) och olika spårämnen (TE) i miljön. Dessa föroreningar anses vara de mest giftiga föroreningarna i världen på grund av att de stannar kvar i miljön samt att de har toxikologisk påverkan på levande varelser. På senare tid har oron för dessa miljöföroreningar lett till utvecklingen av flera saneringstekniker, såsom fysiska, kemiska och biologiska metoder. I denna avhandling undersöktes enkla marksaneringsalternativ (GRO) på olika nivåer, för återvinning av PHC och TE från förorenad jord. I den första delen av denna avhandling, utfördes laboratorieförsök för att karakterisera PHC- och TE-förorenad jord samt av de inhemska mikroorganismerna (bakterier och svampar) som förekommer i dessa förorenade jordar. Det konstaterades att den studerade förorenade jorden hade en negativ inverkan på daggmaskars utveckling och biomassan av L. sativum. Dessutom kunde den höga respirationen bland mikroorganismerna tillskrivas omvandlingen och mineraliseringen av organiskt material och/eller de organiska föroreningar som observerades. Denna närvaro av livsdugliga mikroorganismer antydde att mikroorganismerna anpassat sig till föroreningssituationen på platsen. Ytterligare resultat visade dock att den långvariga exponeringen av höga PHC-koncentrationer i isolerade odlingsmedier, för mikroorganismer i jorden, inte påverkade förmågan för dessa att effektivt bryta ned PHC. Dock hade den fylogenetiska tillhörigheten en stark påverkan på bionedbrytning av PHC. I den andra delen av denna avhandling genomfördes preliminära studier i växthus där förmågan hos M. sativa undersöktes, med hjälp av kompost, gällande den växthusstödda fytosaneringen av PHC och TE. Resultaten visade att inblanding av kompost i jorden främjade nedbrytningen av PHC, tillväxten och överlevnadsgraden av M. sativa och fytoextraktion av Pb. Återstående riskbedömning efter fytosaneringen visade också en positiv effekt, när komposten användes, på växternas tillväxt och daggmaskarnas utveckling. Ett experiment med eco-bädd utfördes för den tredje delen av avhandlingen. Denna studie visade på en minskning på upp till 80% av PHC och 20% av metallerna. Denna avhandling visar att M. sativa och H. annus var lämpliga för nedbrytning av PHC och fytoextraktion av Pb och Cu. Resultaten från denna avhandling förväntas vara användbara för ytterligare studier av fytoremediering i fullskala.