INTRODUÇÃO: As infecções causadas por bactérias ou vírus são frequentes em pacientes com imunodeficiência comum variável (ICV) devido à deficiência de anticorpos e associação com alteração da função das células T. OBJETIVOS: Avaliar o efeito da ativação de receptores Toll-like (TLR) utilizando ligantes de TLRs em células T monofuncionais ou polifuncionais em pacientes com ICV. MÉTODOS: Foram selecionados 16 pacientes com ICV do Ambulatório de Manifestações Dermatológicas das Imunodeficiências Primárias ADEE3003 HC-FMUSP e 16 controles saudáveis. Os métodos utilizados de citometria de fluxo foram: a) análise em sangue periférico de linfócitos B, linfócitos T quanto ao perfil de ativação/maturação, linfócitos T foliculares (Tfh) e células T reguladoras (Treg); b) dosagem de citocinas e quimiocinas em amostras de soro e em sobrenadante de culturas de células mononucleares do sangue periférico (CMNs) estimuladas com agonistas de TLRs; c) avaliação das células TCD4+ mono e polifuncionais secretoras de IL-17a, IL-22, TNF, IFN- e IL-10, e expressão de marcador de ativação crônica de CD38 estimuladas por agonistas de TLR2, TLR3 e TLR7/8 e estímulos policlonais como enterotoxina B de Staphylococcus aureus (SEB) e acetato miristato de forbol e ionomicina (PMA/IONO); d) células Th22 e Tc22 estimuladas com TLR e SEB. RESULTADOS: Na ICV, os linfócitos B do sangue periférico mostram diminuída frequência, sendo em maior frequência de linfócitos B naïve (CD19+IgD+CD27-), e ausência de células B de memória. Além disto, um aumento na expressão do marcador de exaustão PD-1 foi observado nas células TCD4+ de memória efetora (CD45RA-CCR7-) e na expressão de CD38, em células TCD8+ terminalmente diferenciadas (CD45RA + CCR7-). Em contraste, houve diminuição na frequência de células T reguladoras naïve nos pacientes com ICV. Nos indivíduos com ICV foi observado aumento na frequência de células TCD4+ TNF+ sob estímulo TLR2 e TLR7/8 comparado ao grupo controle, enquanto que sob estímulo com PMA/IONO houve menor frequência de células TCD4+ e TCD8+ secretoras de IFN-y IL-17a, IL-22 ou TNF. Já em células TCD8+ houve importante redução na ativação via TLR3 na resposta de IL-22, IFN-y e IL-17a. Contudo, os estímulos com TLR7/8 e SEB foram capazes de aumentar a frequência de células Th22 e Tc22 nos pacientes com ICV. Em geral, as células TCD4+, que secretam simultaneamente 4 a 5 citocinas induzidas por TLR foram preservadas em ICV. Embora as células TCD4+ polifuncionais secretoras de 3 citocinas, foram capazes de responder a estímulos via TLR2 e TLR7/8, as células TCD8+ não responderam para qualquer estímulo via TLRs. Além disso, as células T que expressam CD38 mostraram menor polifuncionalidade aos estímulos via TLRs e PMA/IONO. O perfil inflamatório nos pacientes com ICV foi observado pela elevação sérica de IL-6, CCL-2, CCL-5, CXCL8, CXCL-9, CXCL-10. Alteração na resposta aos agonistas de TLRs em ICV pode ser observada com a ativação dos agonistas de TLRs em CMNs, que mostrou maior produção de TNF e diminuição de CCL2 e CXCL8 após ativação via TLR4. Em contraste, o agonista de TLR7/8, teve ação oposta induzindo CXCL10 e reduzindo os níveis de CXCL9. Chama atenção no ICV, à reduzida secreção de IFN-alfa induzida por TLR7/8, que não foi observada com a ativação via TLR9. CONCLUSÕES: Até o momento, os achados em ICV mostram alterações nas células T, seja quanto à baixa frequência de células T reguladoras naïve e a reduzida resposta efetora, em especial das células TCD8+. Contudo, enfatiza o potencial de adjuvante dos agonistas de TLR7/8 na ativação das células T / INTRODUCTION: Infections caused by bacteria or viruses are common in patients with Common Variable Immunodeficiency (CVID), due to antibody deficiency and association with altered function of T cells. OBJECTIVES: To evaluate the effect of Toll-like receptors (TLR) activation using TLR agonists on the monofunctional or polyfunctional T cells in patients with CVID. METHODS: We selected 16 patients with ICV from the Dermatologic Manifestations of Primary Immunodeficiencies Clinic ADEE3003 HC-FMUSP and 16 healthy controls. The methods used for flow cytometry were: a) analysis of peripheral blood B lymphocytes, T lymphocytes were assessed by the activation/maturation profile, follicular T cells (Tfh) and regulatory T cells (Treg); b)evaluation of cytokines and chemokines serum levels and in supernatants of mononuclear cell cultures from peripheral blood (PBMC) stimulated with TLR agonists; c) evaluation of mono and polyfunctional CD4+ T cells secreting IL-17a, IL-22, TNF, IFN-y and IL-10, and expression chronic activation marker of CD38 stimulated by agonists of TLR2, TLR3 and TLR7/8 and polyclonal stimuli such as Staphylococcus aureus enterotoxin B (SEB) and phorbol myristate acetate and ionomycin (PMA / IONO); d) analysis of Tc22 and Th22 cells stimulated with TLR and SEB. RESULTS: In the CVID, the peripheral blood B cells show decreased frequency, being higher frequency of naïve B cells (IgD+ CD19+ CD27-) and lack of memory B cells. Moreover, an increased expression of PD-1, an exhaustion marker, was detected in the CD4+ T cell effector memory (CD45RA- CCR7-) and expression of CD38 on CD8+ T terminally differentiated cells (CD45RA+ CCR7-). In contrast, a decreased frequency of naïve regulatory T cells was detected in the patients with CVID. In CVID patients it was observed increased frequency of T CD4+ TNF+ cells upon TLR2 and TLR7/8 agonists compared to the control group, while under stimulation with PMA /IONO there was a lower frequency of CD4+ and CD8+T cells secreting IFN-y, IL-17a, IL-22 or TNF. The CD8+T cells showed a significant reduction of in the IL-22 response, IFN-? and IL-17a induced by TLR3 activation. However, stimulation with TLR7/8 and SEB were able to increase the frequency of Th22 and TC22 cells in the patients with CVID. In CVID patients it was observed increased frequency of T CD4+ TNF+ cells upon TLR2 and TLR7/8 agonists compared to the control group, while under stimulation with PMA /IONO there was a lower frequency of CD4+ and CD8+ T cells secreting IFN-y, IL-17a, IL-22 or TNF. The CD8+ T cells showed a significant reduction of in the IL-22 response, IFN-y and IL-17a induced by TLR3 activation. However, stimulation with TLR7/8 and SEB were able to increase the frequency of Th22 and TC22 cells in the patients with CVID. In general, CD4+ T cells that secrete simultaneously 4 to 5 cytokines induced by TLR were preserved in CVID. Although polyfunctional CD4+ T cells secreting 3 cytokines were able to respond to TLR2 and TLR7/8 agonists, the CD8+ T cells did not respond to any stimuli. In addition, T cells expressing CD38, showed lower polyfunctionality to the stimuli via TLRs and PMA/IONO. Furthermore, the inflammatory status in the patients with CVID was observed by the increased serum levels of IL-6, CCL-2, CCL-5, CXCL8, CXCL-9, CXCL-10. In contrast, the agonist of TLR7/8 had opposite action inducing CXCL10 and reducing the CXCL9 levels. Noteworthy in CVID, that the reduced secretion of IFN-alfa induced by TLR7/8 was not observed with TLR9 activation. CONCLUSIONS: To date, the CVID findings shows alterations in the T cells, as the low frequency of naïve regulatory T cells and reduced effector response, mainly of CD8+ T cells. However, it emphasizes the adjuvant potential of the TLR7/8 agonist in the T cells activation

A paracoccidioidomicose (PCM) é uma micose sistêmica e endêmica na América Latina com maior prevalência no Brasil, Colômbia e Venezuela. A doença é causada pelos fungos P. brasiliensis e P. lutzii. As células dendríticas são eficientes apresentadoras de antígenos e quando utilizadas como adjuvante podem ser de 100 a 1000 vezes mais efetiva nesta função. O peptídeo P10 corresponde a um trecho específico de 15 aminoácidos derivado da gp43, principal antígeno diagnóstico, e é reconhecido pelos linfócitos T CD4+ capaz de induzir resposta preferencialmentedo tipo Th1 e conferindo proteção no modelo experimental. Células indiferenciadas foram obtidas a partir de medula óssea de camundongos machos BALB/c B10.A, cultivadas na presença de GM-CSF e IL-4 por 9 dias, para a diferenciação de células dendríticas (DC). As células foram incubadas na presença do P10 por 2 horas, em estufa com 5% de CO2 a 37°C, e foram utilizadas nas imunizações. A maturação das células foi observada por citometria de fluxo com os marcadores CD11c, MHC-II, CD80 e CD86. Camundongos da linhagem BALB/c e B10.A foram submetidos à imunossupressão com dexametasona, por 20 dias, seguido pela infecção intratraqueal com o isolado Pb18. Após 30 dias, os grupos foram tratados com DCs ou DCs pulsadas com P10 em associação ou não com sulfametoxazol/Trimetoprim, por um período de 15 dias. O sacrifício ocorreu 45 dias após a infecção e foram retirados os pulmões, baço e fígado para quantificação de carga fúngica, análise histológica e dosagem de citocinas. Observamos diminuição significativa da carga fúngica nos pulmões dos animais que receberam DCs pulsadas com P10 associada ou não ao tratamento medicamentoso. Não foi observado crescimento fúngico em outros órgãos como fígado e baço em ambos os grupos. A análise histológica revelou redução da carga fúngica e preservação do parênquima pulmonar nos grupos tratados com Dcs pulsadas com P10. As dosagens das citocinas indicaram uma resposta imune mista Th1/Th2. Inicialmente reportamos que as DCs pulsadas com P10 reduz a carga fúngica em camundongos infectados. Neste trabalho, reportamos que as DCs pulsadas com P10 podem também reduzir a carga fúngica em animais anérgicos, mimetizando pacientes com a forma aguda/subaguda da doença / Paracoccidioidomycosis (PCM) is a systemic and endemic mycosis in South America, with higher prevalence in Brazil, Colombia and Venezuela. This disease is caused by fungi P. brasiliensis and P. lutzii. The peptide P10 matches a specific path of 15 amonoacids which is derived from gp43, main diagnostic antigen. This peptide is recognized by the T CD4+ lymphocytes and induces a response type Th1, giving protection at an experimental mode. Some dendritic cells (DC) have an efficient antigen and, when used as adjuvant, they can be 100 to 1000 times more effective. Undifferentiated cells were obtained from bone marrow of male mice type BALB/c and B10.A and cultivated in the presence of GM-CSF and IL-4 for 9 days, so that DCs would be differentiated. The cells were incubated in the presence of P10 for 2 hours in incubator at 37°C with 5% of CO2, and later utilized in the immunizations. Maturation of the cells was observed by flow cytometry with CD11c, MHC-II, CD80 and CD86 markers. Mice types BALB/c and B10.A had been submitted to an immunosuppression with dexamethasone for 20 days, before being intratracheally infected with isolate Pb18. After 30 days, the group of animals received immunizations with DCs or DCs pulsed with P10 associated or not with the treatment by Sulfametoxazol/Trimetoprim, this for a period of 15 days. The sacrifice occurred 45 day after the animals had been infected, and their lungs, spleen and liver were taken out for quantification of fungal burden, histology and cytokine assay. We observed a significant decrease of fungal burden in the lungs of animal that received DC pulsed with P10, associated or not with the drug treatment. In both groups we didn\'t observe fungal growth in organs such as liver and spleen. The histological analyses showed reduced fungal burden and preservation of lung parenchyma. The dosages of cytokines showed an immune response mixed Th1/Th2 type. At first we reported that the DCs pulsed with P10 were responsible for reducing the fungal burden in infected mice. In this paper we report that the DCs pulsed with P10 may also be responsible for reducing fungal burden in anergic animals, mimicking patients with the acute/subacute form of the disease

O excesso de adenina na dieta (ADE) promove precipitação intrabular de cristais, levando a uma nefrite intersticial progressiva com perda de função renal. Estudo recente demonstrou que esse processo requer ativação do sistema NF-kB. No presente estudo investigamos o possível envolvimento de outros componentes da imunidade inata, além do NF-kB. Verificamos também a hipótese de que a nefropatia associada aos cristais continua a progredir mesmo depois de cessada a sobrecarga de adenina. Foram estudados ratos Munich-Wistar machos e adultos sem tratamento (C) ou recebendo 0.5% de ADE na dieta. Após 1 semana, a ADE foi removida da dieta e os animais foram seguidos por 4 ou 24 semanas. A administração de ADE por 1 semana promoveu uma inflamação intersticial aguda, com perda de função renal, alteração da pressão caudal, sem alterações glomerulares. Os mediadores da imunidade inata, como TLR2, TLR4, inflamassoma NLRP3, IL1beta e IL-6, apresentaram-se ativados sem, no entanto, ativar o sistema NF-kB. Após cessada a sobrecarga de ADE, a inflamação persistiu, com infiltração por macrófagos, expressão elevada de AngII, deposição progressiva de colágeno e, na fase mais tardia, glomeruloesclerose, caracterizando um processo inflamatório crônico, autônomo, que não contou com a participação do eixo NLR/IL1beta. Em contraste, o sistema NF-kB foi ativado, sendo um dos possíveis estímulos a produção intra-renal de AngII. Dois mecanismos patogênicos podem ser identificados neste estudo: 1) agudo, associado à ativação do eixo NLR-IL1beta; 2) crônico, associado à produção de AngII renal e à ativação do sistema NF-kB / Excess adenine in the diet (ADE) promotes intratubular crystal precipitation, leading to progressive interstitial nephritis and loss of renal function. A recent study has shown that this process requires activation of the NF-kB system. In the present study we investigated the possible involvement of other components of innate immunity, in addition to NF-kB, as well as whether nephropathy associated with excess adenine continues to progress even after dietary cessation. Male Munich-Wistar rats without treatment (C) or receiving 0.5% of ADE in the diet were studied. After 1 week, ADE was removed from the diet and the animals were followed for 4 or 24 weeks. Administration of ADE for 1 week promote acute interstitial inflammation, with loss of renal function, alteration of caudal pressure, without glomerular changes. Mediators of innate immunity, such as TLR2, TLR4, NLRP3 inflamassome, IL1beta and IL-6 , were shown to be activated, with no apparent activation of the NF-kB system. In the late phases of the model, the inflammation persisted, with significant infiltration by macrophages, high expression of AngII, progressive collagen deposition and glomerulosclerosis, characterizing a chronic, autonomic inflammatory process that did not involve the participation of the NLR/IL1beta axis. By contrast, the NF-kB system was activated, with intra-renal AngII production as a possible stimulus. Two mechanisms operated this study: 1) an acute one, associated with activation of the NLR-IL1beta axis; 2) a chronic one, associated with intrarenal AngII production and NF-kB activation

The increasing healthcare burden of type 1 diabetes (T1D) makes finding preventive or therapeutic strategies a global priority. This chronic disease is characterized by the autoimmune destruction of the insulin-producing β cells. This destruction leads to poorly controlled blood glucose and accompanying life threatening acute and chronic complications. The role of viral infections as initiating factors for T1D is probable, but contentious. Therefore, my goal is to better characterize the effects of viral infection on human β cells in their function of producing insulin and to define innate immune gene responses in β cells upon viral infection. These aspects were evaluated in various platforms including mice engrafted with primary human islets, cultured primary human islets, β cells derived from human stem cells, and a human β cell line. Furthermore, the contributions of cell-type specific innate immune responses are evaluated in flow cytometry-sorted primary human islet cells. Taken together, the results from these studies provide insights into the mechanisms of the loss of insulin production in β cells during virus infection, and characterize the antiviral innate immune responses that may contribute to the autoimmune destruction of these cells in T1D.

Innate immunity is the first line of defense against invading pathogens. It provides immediate protection by initiating both cellular and humoral immune reactions in response to a wide range of infections. It is also important to the development of long-lasting and pathogen-specific adaptive immunity. Thus, studying of the innate immunity, especially the pathogen recognition and signaling modulation, is crucial for understanding the intrinsic mechanisms underlying the host defense, as well as contributing the development of the fight against infectious diseases. Drosophila is an ideal model organism for study of innate immunity. Comparing to mammals, Drosophila immunity is relative conserved and less redundant. A variety of molecular and genetic tools available add further convenience to the research in this system. My work is focused on the signaling modulation by post-translational modification after activation. In these studies I demonstrated in the center of Imd pathway, the Imd protein undergoes proteolytic cleavage, K63-polyubiquitination, phosphorylation, K63-deubiquitination and K48-polyubiquitination/degradation in a stimulation-dependent manner. These modifications of Imd play a crucial role in regulating signaling in response to infection. The characterization of ubiquitin-editing event provides a new insight into the molecular mechanisms underlying the activation and termination of insect immune signaling pathway.

The innate immune system is an evolutionarily conserved primary defense system against microbial infections. One of the central components of innate immunity are the pattern recognition receptors which sense infection by detecting various conserved molecular patterns of pathogens and trigger a variety of signaling pathways. In this dissertation, the signaling pathways of several classes of these receptors were dissected. In chapters II and III, the role of two NOD-like receptors, NLRP3 and NLRC4 were investigated in the context of infection with the fungal pathogen, C. albicans. C. albicans is an opportunistic pathogen that causes diseases mainly in immunocompromised humans and innate immunity is critical to control the infection. In chapters II and III, we demonstrate that a multiprotein-inflammasome complex formed by the NLR protein, NLRP3 and its associated partners, ASC and caspase-1 are critical for triggering the production of mature cytokine IL-1β in response to C. albicans. NLRC4, another inflammasome forming NLR that is activated by intracellular bacterial pathogens, was not required for this process in macrophages. Thus, our data indicates that NLRP3 inflammasome responds to fungal infections in addition to its known stimuli such as bacterial and viral infections, toxic, crystalline and metabolic signals. Interestingly, this NLRP3 dependent inflammasome response was maintained even when the pathogen is not viable, and is either formalin fixed or heat-killed (HK). Hence, in chapter III, we examined β-glucans, a structural cell wall component, as the potential immunostimulatory component of C. albicans and dissected the inflammasome responses to β -glucans. We observed that NLRP3-ASC-caspase-1 inflammasome was critical for commercially obtained particulate β-glucans similar to the case of C. albicans. β-glucan sensing C-lectin receptor dectin-1 and the complement receptor CR3 mediated inflammasome activation, IL-1β production in response to the glucan particles. Interestingly, CR3 which recognizes glucans as well as complement opsonized pathogens was strongly required for HK C. albicans induced IL-1β, and partially required for that of live C. albicans, while dectin-1 was not required. Consistent with the receptor studies, blocking of β -glucan receptors by pre-incubating cells with nonstimulatory, soluble glucans led to decreased IL-1β production in response to HK C. albicanswith no effect on IL-1β in response to the live fungus. Dectin-1, CR3 and β-glucan sensing also triggered a moderate dendritic cell death response to β-glucans and HK C. albicans. Live C. albicans induced cell death requires phagocytosis but not the inflammasome, β-glucan sensing, dectin-1 or CR3. The Drosophila caspase-8 like molecule DREDD plays an essential, nonapoptotic role in the Drosophila NF-κB pathway called the ‘IMD’ pathway. Owing to the remarkable evolutionary conservation between Drosophila and mammalian innate immune NF-κB pathways, we explored the potential role of caspase-8 in inflammasomes and in TLR signaling. Using casp8-/- Rip3-/- macrophages and dendritic cells, we observed that caspase-8, specifically augments β-glucan and HK C. albicans induced IL-1β as well as cell death in a caspase-1 independent manner, but not that of live C. albicans, in chapter III. We also found that caspase-8 differentially regulates TLR4 and TLR3 induced cytokine production (chapter IV). Caspase-8 specifically promotes TLR4 induced production of cytokines such as TNF, IL-1β in response to LPS and E. coli. On the other hand, caspase-8 negatively regulates TRIF induced IFNβ production in TLR4 and TLR3 signaling in response to LPS and dsRNA. Caspase-8 executed a similar mode of regulation of the cytokine RANTES in MEFs, in part, by collaborating with RIP3. Strikingly, caspase-8 deficiency alone triggers higher macrophage death and IL-1β production in response to TLR ligands, due to the presence of RIP3. Thus, in addition to its conventional roles in apoptosis, caspase-8 modulates TLR4 and TLR3 induced cytokine production and prevents RIP3 mediated hyper inflammation in response to TLR signals. Together, our findings provide valuable information on fungal pattern recognition and inflammasome pathways and define the contribution of β-glucan sensing to C. albicans induced inflammasome responses. In addition, we demonstrate how caspase-8 adds a layer of specificity to inflammasome as well as TLR signaling. Overall, these results also shed light on the cross talk between death signaling components and innate immune pathways to mount a specific and potentially effective innate immune response against microbial pathogens.

Drosophila is host to the steroid hormone ecdysone, which regulates development and immune functions using a common group of transcription factors. Developmentally-induced ecdysone pulses activate the expression of the EcR, BR-C, HR46, Eip74EF, Eip75B, Eip78C, and Eip93F, which assume control of hundreds of other genes involved in the transition from larva to pupa stage. Many of the transcription factors are related to mammalian nuclear hormone receptors by homology. In addition to these transcription factors, the ecdysoneregulated GATA factors SRP and PNR are required for the proper expression of the peptidoglycan sensor PGRP-LC, which belongs to a conserved class of proteins in innate immunity. Although the transcriptional network has been elucidated in development, it is unclear why ecdysone control of PGRP-LC gene activity involves these nine transcription factors and how ecdysone is regulated in the context of an infection in vivo. An ecdysone-activated enhancer was located upstream of the PGRP-LC locus using a reporter plasmid. Female flies that lacked the enhancer had reduced PGRP-LC expression, but survived infection. Male flies did not experience these changes. Therefore, PGRP-LC enhancer appears to be a female-specific cis-regulatory element. The lack of survival phenotype could be caused by using an improper injection site. Bioinformatics software was used to identify putative individual and overlapping binding sites for some transcription factors. Site-directed mutations of the motifs reduced PGRP-LC promoter activity without abolishing the signal. These results suggest that the transcription factors assemble at multiple locations on the PGRP-LC enhancer and form strong protein-protein bonds. Septic injury led to elevated ecdysone in whole flies, which could be a neuroendocrine response to stress similar to the mammalian system. Steroid hormone regulation of immune receptors is a common theme in humans and flies, and these results could advance our understanding of the transcriptional regulation of related genes and gender differences observed in innate immune responses at the transcriptional level.

The innate immune system provides an essential first line of defense against infection. Innate immune cells detect pathogens through several classes of Pattern Recognition Receptors (PRR) allowing rapid response to a broad spectrum of infectious agents. Activated receptors initiate signaling cascades that lead to the production of cytokines, chemokines and type I interferons all of which are vital for controlling pathogen load and coordinating the adaptive immune response. Detection of nucleic acids by the innate immune system has emerged as a mechanism by which infection is recognized. Recognition of DNA is complex, influenced by sequence, structure, covalent modification and subcellular localization. Interestingly certain synthetic oligodeoxynucleotides comprised of the TTAGGG motif inhibit proinflammatory responses in a variety of disease models. These suppressive oligodeoxynucleotides (sup ODN) have been shown to directly block TLR9 signaling as well as prevent STAT1 and STAT4 phosphorylation. Recently AIM2 has been shown to engage ASC and assemble an inflammasome complex leading to the caspase-1-dependent maturation of IL-1β and IL-18. The AIM2 inflammasome is activated in response to cytosolic dsDNA and plays an important role in controlling replication of murine cytomegalovirus (MCMV). In the second chapter of this thesis, a novel role for the sup ODN A151 in inhibiting cytosolic nucleic acid sensing pathways is described. Treatment of dendritic cells and macrophages with the A151 abrogated type I IFN, TNF-α and ISG induction in response to cytosolic dsDNA. A151 also reduced INF-β and TNF-α induction in BMDC and BMDM responding to the herpesviruses HSV-1 and MCMV but had no effect on the responses to LPS or Sendai virus. In addition, A151 abrogated caspase-1-dependent IL-1β and IL-18 maturation in dendritic cells stimulated with dsDNA and MCMV. Although inhibition of interferon-inducing pathways and inflammasome assembly was dependent on backbone composition, sequence differentially affected these pathways. While A151 more potently suppressed the AIM2 inflammasome, a related construct C151, proved to be a more potent inhibitor of interferon induction. A151 suppressed inflammasome signaling by binding to AIM2 and competing with immune-stimulatory DNA. The interaction of A151 and AIM2 prevented recruitment of the adapter ASC and assembly of the macromolecular inflammasome complex. Collectively, these findings reveal a new route by which suppressive ODNs modulate the immune system and unveil novel applications for suppressive ODNs in the treatment of infectious and autoimmune diseases. The innate immune response to HSV-1 infection is critical for controlling early viral replication and coordinating the adaptive immune response. The cytokines IL-1β and IL-18 are important effector molecules in the innate response to HSV-1 in vivo. However, the PRRs responsible for the production and maturation of these cytokines have not been fully defined. In the third chapter of this thesis, The TLR2-MyD88 pathway is shown to be essential for the induction of pro-IL-1β transcription in dendritic cells and macrophages responding to HSV-1. The HSV-1 immediate-early protein ICP0 has previously been shown to block TLR2 responses and in keeping with this finding, ICP0 blocked pro-IL-1β expression. Following translation, pro-IL-1β exists as an inactive precursor that must be proteolytically cleaved by a multiprotein complex known as the inflammasome to yield its active form. Inflammasomes are composed of cytoplasmic receptors such as NLRP3 or AIM2, the adapter molecule ASC, and pro-caspase-1. In the present study we found that the NLRP3 inflammasome is important for maturation of IL-1β in macrophages and dendritic cells responding to HSV-1. In contrast the related NLRP12 protein controls IL-1β production in neutrophils. These data indicate that sensing of HSV-1 by TLR2 drives pro-IL-1β transcription and infection activates the inflammasome to mature this cytokine. Moreover, these studies reveal cell type-specific roles for NLRP3 and NLRP12 in inflammasome assembly.

All organisms exist in some sort of symbiosis with their environment. The food we eat, air we breathe, and things we touch all have their own microbiota and we interact with these microbiota on a daily basis. As such, we employ a method of compartmentalization in order to keep foreign entities outside of the protected internal environments of the body. However, as other organisms seek to replicate themselves, they may invade our sterile compartments in order to do so. To protect ourselves from unfettered replication of pathogens or from cellular damage, we have developed a series of receptors and signaling pathways that detect foreign bodies as well as abnormal signals from our own perturbed cells. The downstream effector molecules that these signaling pathways initiate can be toxic and damaging to both pathogen and host, so special care is given to the regulation of these systems. One method of regulation is the production of endogenous small ribonucleic acids that can regulate the expression of various receptors and adaptors in the immune signaling pathways. In this dissertation, I present work that establishes an important protein in small ribonucleic acid regulation, Dicer, as an essential protein for regulating the innate immune response to immuno-stimulatory nucleic acids as well as regulating the productive infection of encephalomyocarditis virus. Depleting Dicer from murine embryonic fibroblasts renders a disparate type I interferon response where nucleic acid stimulation in the Dicer null cells fails to produce an appreciable interferon response while infection with the paramyxovirus, Sendai, induces a more robust interferon response than the wild-type control. Additionally, I show that Dicer plays a vital role in controlling infection by the picornavirus, encephalomyocarditis virus. Encephalomyocarditis virus fails to grow efficiently in Dicer null cells due to the inability for the virus to bind to the outside of the cell, suggesting that Dicer has a role in modulating viral infection by affecting host cellular protein levels. Together, this work identifies Dicer as a key protein in viral innate immunology by regulating both the growth of virus and also the immune response generated by exposure to pathogen associated molecular patterns. Understanding this regulation will be vital for future development of small molecule therapeutics that can either modulate the innate immune response or directly affect viral growth.

Yersinia pestis, the causative agent of plague, specializes in causing dense bacteremia following intradermal deposition of a small number of bacteria by the bite of an infected flea. This robust invasiveness requires the ability to evade containment by the innate immune system. Of the various mechanisms employed by Y. pestis to subvert the innate immune response and to proliferate rapidly in mammalian tissue, only a few are well-characterized. Here, I present two complementary genetic analyses of Y. pestis adaptations to the mammalian environment. In the first, genome-wide fitness profiling for Y. pestis by Tn-seq demonstrates that the bacterium has adapted to overcome limitation of diverse nutrients during mammalian infection. In the second, a series of combinatorial targeted mutations disentangles apparent functional redundancy among the effectors of the Y. pestis type III secretion system, and we report that YpkA, YopT, and YopJ contribute to virulence in mice. We have also begun to investigate a novel relationship between Y. pestis and mammalian platelets, a highly abundant cell type in plasma. I present evidence that Y. pestis has evolved specific mechanisms to interfere with platelet activation, likely in order to evade immune responses and promote maintenance of bacteremia by undermining platelet thrombotic and innate immune functions. The principles guiding this work – systematic genetic analysis of complex systems, coupled with rational modification of in vitro assays to more closely mimic the in vivo environment – are a generalizable approach for increasing the efficiency of discovering new virulence determinants in bacterial pathogens.