Neste trabalho foram realizados estudos conformacionais de algumas lactonas sesquiterpenicas e cálculos teóricos de deslocamento químico. O estudo conformacional é dividido em tres etapas distintas. A primeira etapa se dá pela busca conformacional em mecânica molecular, onde foram encontradas as possíveis conformações assumidas pelo sistema em estudo. Na segunda etapa, as conformações encontradas foram otimizadas em mecânica quântica. O último passo neste estudo foi o cálculode deslocamento químico e a posterior correlação com os dados experimentais. / This work is aimed on the theoretical calculation of chemical shifts of sesquiterpene lactones, based on the conformational preferences of the compounds. This conformational study is set up in three stages. The first one is a conformational search using molecular mechanics, to assess the relevant conformations of the system under study. In the second stage, the conformations are optimized by quantum mechanics, for the refinement of both the structural assignment and energy calculation of the most stable conformers found in the previous step. The last step is the theoretical calculation of chemical shifts. Finally the weighted average of calculated values is compared to experimental data.

Mémoire numérisé par la Division de la gestion de documents et des archives de l'Université de Montréal

Mémoire numérisé par la Division de la gestion de documents et des archives de l'Université de Montréal.

La résistance aux lactones macrocycliques (LM) constitue une préoccupation croissante dans le contrôle des nématodes parasitaires, notamment l'Haemonchus contortus chez les ruminants. Parmi les mécanismes étudiés dans la résistance aux LM chez les nématodes d’importance en santé animale, il y a les pompes ABC, principalement les glycoprotéines-p, connues pour leur rôle dans la détoxification des LM chez les strongles. Il n'existe toutefois aucune étude sur l'extrusion des lipides par les pompes ABC en tant que produits excrétoires/sécrétoires provenant d'H. contortus (Hc-PES). Nous émettons l’hypothèse que les pompes ABC chez H. contortus sont à la fois impliquées dans l’extrusion de LM (contribuant à la résistance aux antihelminthiques) et dans l’efflux de lipides secrétés par le parasite. Notre objectif était de caractériser le rôle des pompes ABC chez H. contortus dans le contexte de la résistance aux LM et de l'extrusion des lipides. L'efficacité de l'ivermectine, un membre de LM, a été évaluée dans 8 fermes étudiées par un test de réduction de la numération des œufs dans les selles (TRNOS). Les niveaux d'expression des pompes ABC ont été évalués dans des isolats de champ d’H. contortus avec des résultats TRNOS faibles (présumé souches résistantes). D’ailleurs, des vers adultes d’H. contortus ont été incubés avec trois inhibiteurs de pompes ABC, dont le Fumitremorgin C, le Kétoconazole et le Mk-571 à concentrations différentes. Les lipides ont été identifiés par CL/SM dans les milieux de culture récupérés à 2 h, à 4 h et à 8 h après l'incubation d’H. contortus dans les groupes contrôle et traités. L'expression des gènes Hco-pgp-2 et Hco-pgp-3 était augmentée chez les isolats de champ d’H. contortus. Nous avons identifié 1045 lipides appartenant à diverses catégories. L'extrusion des lipides en Hc-PES a changé en présence d'inhibiteurs de pompes ABC, en particulier pour les lipides composés de structures correspondant à celles pour le transport par les pompes ABC. Nous avons donc conclu que les pompes ABC chez H. contortus représentent un système de multi-extrusion et sont impliquées dans la sécrétion de lipides avec importance dans l’interaction avec l’hôte, mais aussi dans la résistance aux LM chez le nématode. / Macrocyclic lactones (MLs) resistance is a growing concern in controlling parasitic nematodes, particularly Haemonchus contortus in the ruminants’ industry. ABC transporters are known to participate in translocating various lipophilic molecules, including MLs and lipids. Some ABC transporters, mostly P-glycoproteins are known to be involved in MLs detoxification in parasitic nematodes; but there is no data about extrusion of lipids by ABC transporters as Excretory/Secretory Products in H. contortus (Hc-ESP). We hypothesize that ABC transporters in H. contortus have a dual role participating in the efflux of MLs, thus contributing to anthelmintic resistance, and in the extrusion of lipids out of the parasite. This study aimed to characterize the role of H. contortus ABC transporters in the context of ML resistance and the extrusion of lipids. Ivermectin (a member of MLs) efficacy was evaluated in 8 studied farms by the fecal egg count reduction test (FECRT). The expression levels of ABC transporters were evaluated in field isolates of H. contortus with low FECRT results (suspected of resistance). H. contortus adult worms were incubated with three ABC inhibitors, such as Fumitremorgin C, Ketoconazole and Mk-571 with different concentrations. Lipids were identified by LC/MS in culture media at 2h, 4h and 8h post incubation with H. contortus in control and treated groups. Hco-pgp-2 and Hco-pgp-3 were found upregulated in H. contortus field isolates. We identified 1045 lipid molecules belonging to different categories. Interestingly, the lipid profile in Hc-ESP was altered in the presence of ABC transporter inhibitors, which shows structural features compatible as substrates for nematode transporters’ activity. Therefore, ABC transporters in H. contortus participate in extrusion of lipids and also may help in detoxification of MLs, becoming a multipurpose pumping system involved in ML resistance and secretion of lipids at the interplay with the host and among nematodes.

<p>Ostvarene su vi&scaron;efazne sinteze prirodnih citotoksičnih laktona (+)-murikatacina (<strong>1</strong>),<br />(&ndash;)-murikatacina (ent-<strong>1</strong>) i (+)-goniofufurona (<strong>2</strong>), kao i njihovih novih analoga (<strong>3a</strong>,&nbsp; <strong>4</strong>,<br /><strong>5</strong>,&nbsp; <strong>6</strong>,&nbsp; <strong>7</strong>,&nbsp; <strong>8</strong>,&nbsp; <strong>9</strong>,&nbsp; ent-<strong>7&nbsp;</strong>i ent-<strong>9</strong>), polazeći iz&nbsp; D-ksiloze ili iz&nbsp; D-glukoze. Ispitana je&nbsp; in vitro<br />citotoksična aktivnost sintetizovanih prirodnih proizvoda i analoga prema<br />odabranim humanim tumorskim ćelijskim linijama (K562, HL-60, Jurkat, Raji, HT-29,&nbsp;MDA-MB 231 i HeLa), kao i prema ćelijama fetalnih fibroblasta pluća (MRC-5).</p> / <p>Multiphase synthesis of natural cytotoxic lactones&nbsp; (+)-muricatacin (<strong>1</strong>),<br />(&ndash;)-muricatacin (ent-<strong>1</strong>) and (+)-goniofufurone (<strong>2</strong>), as well as synthesis of their<br />analogues (<strong>3a</strong>,&nbsp; <strong>4</strong>,&nbsp; <strong>5</strong>,&nbsp; <strong>6</strong>,&nbsp; <strong>7</strong>,&nbsp; <strong>8</strong>,&nbsp; <strong>9</strong>,&nbsp; ent-<strong>7</strong>and&nbsp; ent-<strong>9</strong>) was achived from&nbsp; D-xylose or<br />D-glucose as starting compounds. In vitro cytotoxic&nbsp; activity of synthetized natural<br />products and analogues against selected human tumour cell lines (K562, HL-60,<br />Jurkat, Raji, HT-29, MDA-MB 231 and HeLa) and against cells of natural foetal lung&nbsp;fibroblasts (MRC-5) was examined.</p>

A química de produtos naturais sempre foi uma fonte importante de novas substâncias e de substâncias bioativas. No mundo moderno, o homem utiliza os produtos naturais para diversos fins: corantes, edulcorantes, essências, defensivos agrícolas e principalmente medicamentos. Com o desenvolvimento das técnicas de isolamento de substâncias, cresceu a necessidade de organizar as informações obtidas e também a criação de meios para a identificação mais rápida das substâncias isoladas. Esta foi uma das necessidades que fez surgir a Quimioinformática. Quimioinformática é uma disciplina que utiliza os métodos da informática para organizar dados químicos, analisar estes dados e gerar novas informações a partir destes dados. Esta ferramenta tem sido utilizada com sucesso em procura por novas drogas (QSAR/QSPR), elucidação estrutural automatizada de substâncias orgânicas e em cálculos e previsão de propriedades físico-químicas de diversas moléculas. Os objetivos do presente trabalho foram o estudo fitoquímico de espécies dos gêneros Dimerostemma e Ichthyothere com o intuito de isolar novas substâncias e o desenvolvimento de técnicas envolvendo quimioinformática com o intuito de auxiliar a elucidação estrutural de produtos naturais. Realizou-se a técnica de microamstragem de tricomas glandulares de diversas espécies pertencentes a gêneros da tribo Heliantheae (Viguiera, Tithonia, Dimerostemma). Através da microamostragem foi possível identificar diversas substâncias presentes nos tricomas glandulares das espécies analisadas. Das duas espécies de Dimerostemma investigadas (D. brasilianum e D. rotundifolium) foi possível identificar dois germacrolidos e dois eudesmanolidos, enquanto que de Ichthyothere terminalis foi possível a identificação de dois melampolidos, todos eles lactonas sesquiterpênicas. Foram treinadas redes neurais artificiais para a realização da identificação dos esqueletos carbônicos de determinadas substâncias a partir dos dados obtidos através dos espectros de RMN 13C, sendo que os resultados obtidos podem ser considerados satisfatórios. Foi desenvolvido um software para efetuar a identificação automática de substâncias através da comparação com uma biblioteca de padrões que possui dados cromatográficos de 51 lactonas sesquiterpênicas. Esse software, chamado de NAPROSYS, também é capaz de fazer comparação de dados de RMN de amostra com dados de RMN presentes em uma biblioteca de dados, tornando possível a identificação imediata de substâncias presentes na biblioteca e também auxiliar a elucidação estrutural de substâncias que não estão nela presentes. Para testar a eficiência do NAPROSYS, o programa foi utilizado com sucesso para identificar LSTs através da microamostragem de tricomas glandulares. A eficiência do NAPROSYS em identificar dados de RMN de substâncias presentes na biblioteca foi testada com substâncias isoladas do gênero Tithonia e Viguiera que possuem substâncias bem descritas na literatura e já isoladas no nosso laboratório, sendo que os resultados apresentados foram excelentes. Criou-se também dois modelos de redes neurais para prever tempos de retenção de lactonas sesquiterpênicas em cromatografia líquida (QSRR) com o objetivo de melhorar o desempenho do NAPROSYS em análises de dados cromatográficos. Os resultados para este caso, embora coerentes, precisam ser melhorados. Neste trabalho concluimos que o uso das técnicas clássicas juntamente com as novas técnicas de Quimoinformática pode se tornar uma ferramenta muito eficaz para a elucidação estrutural e busca de substâncias com determinadas propriedades químicas ou mesmo na bioprospecção de novas substâncias bioativas. / Natural products chemistry has always been an important source for new andbioactive compounds. In modern world, mankind uses natural products to do many tasks: colouring, as essences, as agricultural defensives and many as medicines. Within the development of compound isolation techniques, the need for information organisation has grown. The need for quickly identification of isolated compounds has also grown. This was one of the necessities that made Chemoinformatics emerge. Chemoinformatics is a discipline that uses informatics as a tool to organise, analise and to generate new knowledge from chemical data. This tool has been used with success in automate structure elucidation, drug development (QSAR/QSPR) and to predict chemical-physical data of many molecules. The aims of the present work were the phytochemical study of species of the genera Dimerostemma and Ichthyothere to isolate new compounds, and the development of chemoinformatics techniques to aid natural products structure elucidation. The glandular trichome microsampling was made for diverse species of genera from the tribe Heliantheae (Viguiera, Tithonia, Dimerostemma). Many compounds were identified through glandular trichome microsampling. Two germacrolides and two eudesmanolides were identified from Dimerostemma species (D. brasilianum and D. episcopale), while from Ichthyothere terminalis two melampolides were identified, all of them being sesquiterpene lactones. Artificial Neural Networks were trained to make skeleton identification from data obtained from 13C NMR and the obtained results can be considered satisfactory. A software was developed to make automatic compound identification through the comparation with a compound library that possesses data from 51 STLs. This software is called NAPROSYS is also able to compare the NMR data of the sample with the NMR data stored into a compound library, making the imediate identification of compounds present into library possible and also help the structure elucidation of unknown compounds. To test NAPROSYS\' efficience to identify NMR data of compunds sored into the library was made with compounds isolated from species of Tithonia and Viguiera genera, because these genera has well describe compounds in the literature and that has been isolated in our laboratory, and the obtained results are excellent. Two Artificial Neural Network models were created to predict the retention time of sesquiterpene lactones in liquid cromatography (QSRR) with the aim of improve NAPROSYS performance in cromatographic data analysis. The results for this case, although coherent, can be improved. The conclusion of this work is that the use of classical techniques with the new techniques of chemoinformatics can be a very efficient tool to make structure elucidation, search for compounds with certain chemical properties and even the search for new bioactive compounds.

O presente trabalho mostra a utilização de métodos computacionais e os resultados obtidos na determinação estrutural de produtos naturais, neste caso sesquiterpenos lactonizados. Nosso grupo de pesquisa tem desenvolvido nos últimos anos o projeto denominado SISTEMAT para a determinação estrutural de produtos naturais. Este sistema é composto de programas utilizados para a construção de bancos de dados capazes de armazenar qualquer tipo de informação referente a substâncias orgânicas, e programas que permitem a recuperação e análise das informações contidas nos bancos de dados (programas aplicativos). Foi também construído um programa para a previsão de espectros de RMN 13C utilizando modelos tridimensionais para a representação das moléculas. O programa considera cada carbono e sua vizinhança química em três dimensões como uma subestrutura. Para encontrar o deslocamento químico equivalente a uma nova subestrutura, ele procura no banco de dados um carbono com uma vizinhança equivalente. O banco de dados criado para o SISTEMAT contém 1300 espectros de RMN 13C de sesquiterpenos lactonizados, enquanto que o utilizado para o programa simulador de espectros de RMN 13C possui 1600 substâncias codificadas. / This work shows the use of computational methods and the results obtained in the structure determination of sesquiterpene lactones. Our research group have developed in the last years the expert system named SISTEMAT, to structure determination of natural products. This system have programs used to construct a database able to store any kind of information about the compounds and programs used to retrieve and analyse informations obtained in the database. It was also planned a program to make predictions of 13C NMR spectra of sesquiterpene lactones. It uses a codification working with tridimensional substructures. The program treats each carbon atom and its neighbouring as a substructure. It can scan all the database for other equal or similar chemical shift values that can be used to predict the 13C NMR spectrum for a new compound. The current database contains about 1300 13C NMR spectra of sesquiterpene lactones. The other database used in the program for 13C NMR prediction has 1600 compounds.

Cette étude décrit la mise au point de la synthèse de poly( -caprolactone) dans le dioxyde de carbone supercritique (scCO2). Utilisant des isopropanolates d'aluminium, d'yttrium et de lanthane comme amorceurs, la poly( -caprolactone) a été synthétisée dans le scCO2. Les rendements obtenus varient énormément, selon les amorceurs et les conditions de polymérisation. Afin de mieux comprendre le mécanisme mis en jeu, une étude plus complète portant sur l'état thermodynamique du système et les interactions microscopiques a été initiée. Des mesures de point trouble pour des mélanges (monomère / CO2, polymère / CO2, monomère / polymère / CO2) ont été effectuées à l'aide d'une cellule PVT équipée de deux fenêtres en saphirs, conduisant à l'établissement des diagrammes de phase pour ces systèmes. De plus, les mélanges amorceurs/CO2 ont été étudiés par spectroscopie infra-rouge dans le scCO2 et différents types d'interactions entre l'alcoolate de métal et le CO2 ont été mis en évidence.

La chimie radicalaire connaît depuis une vingtaine d'années un succès grandissant et ses applications en synthèse organique sont devenues fréquentes. La désoxygénation de Barton et la réduction de dérivés halogénés par l'hydrure de tributylétain ont ouvert la voie à toute une classe de réactions de modification sélective de groupes fonctionnels. Depuis quelques années, les recherches menées au laboratoire sont centrées sur les applications possibles de la chimie radicalaire dans le domaine des réactions intermoléculaires, notamment grâce à la chimie radicalaire des xanthates. Ces composés donnent en effet des résultats particulièrement intéressants dans le cas des réactions d'addition intermoléculaire entre des radicaux carbonés et des oléfines de caractères variées. C'est dans ce cadre que se situent les travaux présentés dans ce manuscrit. L'objectif de ces études a été de développer une série de réactions applicables en synthèse organique. Toutes ces réactions ont pour particularité d'utiliser les xanthates comme source de radicaux. L'organisation du manuscrit est faite de la manière suivante : Dans une première partie, nous présenterons la chimie radicalaire des xanthates développée au laboratoire. Après une brève introduction sur la chimie radicalaire, nous nous attacherons à la particularité de la fonction xanthate, les synthèses possibles de ce type de composés, et les réalisations utilisant cette méthode. Mes travaux effectués sous la direction du Professeur Samir Zard, en collaboration avec Monsieur Jean-Marc Paris et Monsieur François Metz de la société Rhodia, sont centrés sur l'étude de nouveaux radicaux générés par des xanthates, chaque étude présentant un grand nombre d'applications variées. L'exposé de nos travaux portera en premier lieu sur l'étude de xanthates trifluorométhylés. Nous montrerons comment ils permettent d'offrir un accès facile à des composés fluorés particulièrement utiles, notamment dans l'industrie pharmaceutique (Partie 2). Par la suite, nous présenterons la formation de nouveaux radicaux issus d'aldéhydes. Cette méthode ouvre un nouvel accès aux cyanodiènes et δ-lactones insaturées, et offre des solutions inédites pour la synthèse organique (Partie 3). Enfin, nous ferons état de nos travaux sur les radicaux formés à partir de sels d'aryldiazoniums. Nous montrerons qu'il est possible de réaliser des réactions d'additions radicalaires intramoléculaires, permettant l'accès à des hétérocycles variés (Partie 4).

Macromolecular engineering is one of the most powerful tools to control the molecular parameters, including architecture of polymers, and to improve their performances or to impart them new properties. This contribution aims at reporting on a novel strategy for the macromolecular engineering of poly-ε-caprolactone (PCL) which is based on the use of functional ε-caprolactone, the α-chloro-ε-caprolactone (αClεCL). Indeed, αClεCL is a precursor of polymers and copolymers with εCL that bear pendant activated chlorides well suited to grafting from reaction. These (co)polyesters have been used as macroinitiators for the Atom Transfer Radical Polymerization (ATRP) of methyl methacrylate leading to the corresponding graft copolymer. They have also been involved in an Atom Transfer Radical Addition (ATRA) reaction with a series of olefins bearing different functional groups (hydroxyl, carboxylic acid and epoxy group) in order to functionalize the polyester backbone without deleterious degradation. ATRA of PEO chains with an unsaturation end groups has also been carried out in order to prepare PCL-g-PEO of different compositions to be used as stabilizers of polyester nanoparticles. Combination of ring-opening polymerization of ε-caprolactone and the copper-catalyzed Huisgens [3+2] cycloaddition is a novel strategy for going a step further in the macromolecular engineering of poly-ε-caprolactone (PCL). This click reaction is very well-suited to the chemical modification of aliphatic polyesters because, its implementation under very mild conditions prevents chain degradation from occurring. Indeed, alkynes were cycloadded onto azide containing PCL at low temperature (35°C) in an organic solvent (DMF or THF). Originally, α-chloro-ε-caprolactone and ε-caprolactone were randomly copolymerized in toluene at room temperature followed by reaction of the activated chlorides with sodium azide. In order to make a wide range of functional aliphatic polyesters available, poly(α-azide-ε-caprolactone-co-ε-caprolactone) copolyesters were reacted with a series of alkynes substituted by a functional group, e.g., hydroxyl, acrylate and quaternary ammonium salts, This strategy turned out to be efficient to synthesize for instance hydrophilic, photo-cross-linkable and hydrosoluble PCL. Moreover, a variety of graft copolymers were prepared by both the grafting from and the grafting onto techniques. Indeed, an ATRP initiator was attached onto PCL followed by polymerization of vinyl monomers, whereas alkyne endcapped PEO was cycloadded onto azide-containing PCL with formation of amphiphilic PCL-g-PEO copolymers. Last but not least, the click chemistry was very instrumental in imparting an antimicrobial activity to PCL or for the preparation of new functionalized caprolactones.