Lichen uses - potentials of the European Guideline for mapping lichen diversity David Svoboda My projects had one common feature, namely the application of the European Guideline for mapping lichen diversity as an indicator of environmental stress (Asta et al. 2002). This methodology was developed in an effort to make a standardised protocol for European screening of epiphytic lichens for various purposes. The dissertation is focused on selected topics and the main objectives can be summarised as follows: 1) To evaluate the potential of the LDV method for determination of general air pollution, and the possibility of applying the new methodology in the Czech Republic. 2) To compare results given by the LDV method and the older qualitative method by Hawksworth and Rose (1970). 3) To determine the principal factors influencing the epiphytic lichen distribution in Central European oak forests, and to elucidate possible correlations among natural and human caused environmental factors in a large scale study. 4) To investigate the epiphytic lichens living in temperate oak forests, their features and possible lichenological differentiations; to determine indicative species for old growth forests and natural woodlands under different climatic conditions and human influence in the Central Europe. 5) To determine...

Significant differences occurred in the density of tardigrades, rotifers, and nematodes and the diversity of tardigrades between collecting sites located upwind and downwind from a coal-burning power plant in Missouri. The oak tree species and lichen genera also varied in the two areas. Tardigrade and rotifer densities were greater in upwind sites, whereas nematode density was higher in downwind samples. One tardigrade species (Ramazzottius sp.) was found only at the upwind sites, and one species (Echiniscus sp.) was only in the downwind samples. In contrast, three species (Macrobiotus sp., Minibiotus sp., and Milnesium tardigradum) were found both upwind and downwind but in different densities in the two areas. The study presents baseline data for long-term monitoring of the effects of environmental factors on nematode and rotifer densities as well as tardigrade density and diversity.

Lichens have been used extensively and with considerable success as bioindicators of atmospheric pollution in North America and Europe for more than thirty years. Little research has followed in tropical and subtropical regions where population growth is rapid and environmental pressures unprecedented. However, taxa used as bioindicators in other studies and/or taxa having this potential, occur naturally in Central Florida. A new potential major source of pollution, the coal-fired Curtis H. Stanton Energy Center, is about to begin operation providing the opportunity to determine the extent of impact. Therefore, lichen monitoring sites have been established and the collection of baseline data reflecting species diversity, frequency, overall cover and vitality has been accomplished. These locations will be preserved for future monitoring activities. Voucher specimens and photographic documentation of sample populations have been deposited in the herbarium of the University of Central Florida.

Yes / Despite more than two centuries of almost uninterrupted surveys and studies of Algerian lichenology, the history and lichen diversity of Algeria are still poorly understood. During the preparation of a forthcoming checklist of Algerian lichens it was considered necessary to provide the present historical overview of lichenological exploration of the country from 1799 to 2013, supported by a reasonably comprehensive annotated bibliography of 171 titles.

La signature isotopique du plomb (Pb) et du mercure (Hg) a été étudiée dans les lichens épiphytes des Pyrénées-Atlantiques. Un échantillonnage intégré et spatialisé à l’aide d’un système d’information géographique (SIG) a été mis en place afin de prendre en compte la diversité du territoire (occupation des sols, forêts, agriculture, industries et zones urbaines). A méso-échelle (département des Pyrénées-Atlantiques), la composition isotopique permet de différencier les zones impactées par les activités anthropiques mais aussi de discriminer l’origine de la contamination qu’elle soit de type industrielle ou urbaine. A l’échelle locale, la signature isotopique du Hg et Pb dans des lichens et des mousses prélevés dans la forêt d’Iraty (zone frontalière Franco-espagnole) a permis d’évaluer le type de dépôts accumulés dans ces différents bioaccumulateurs atmosphériques et le potentiel de ce nouvel outil pour le suivi des dépôts atmosphériques dans les écosystèmes éloignés. Enfin, sur la zone mercurifère d’Almadén (Castella la Mancha, Espagne) la signature isotopique du Hg dans les lichens et les sédiments apparait comme un outil pertinent pour étudier le transfert du Hg provenant de l’extraction minière vers les hydrosystèmes et l’atmosphère. / The isotopic signature of lead (Pb) and mercury (Hg) was measured in epiphytic lichens from Pyrénées-Atlantiques. An integrated and spatialized sampling was developed using geographical information system (GIS) to take into account the diversity of the territory (land-use, forest, agriculture, industries and urban areas). At meso-scale (county, Pyrenees-Atlantiques) the isotopic composition allows to differenciate areas impacted by anthropegenic activities and discriminate the origin of the contamination that it of industrial or urban type. At local scale, the isotopic signature of Hg and Pb in lichens and mosses sampled in Iraty forest (Franco-Spanish border) allowed to evaluate the kind of atmospheric deposits in these atmospheric bio-monitors and the potential of this new tool for the monitoring of atmospheric depositsin remote ecosystems. Finally, on the mercurifere area of Almadén (Castella la Mancha, Spain) the isotopic fingerprint of Hg in lichens and sediments appears to be a relevant tool to study the transfer of Hg from mining activities to hydrosystems and atmosphere.

Accurate species delimitation has critical implications for ecological and conservation studies; and for understanding factors driving diversification. However, a growing body of evidence indicates that morphology-based species circumspection in lichenized ascomycetes often fails to accurately represent the number of fungal species. The use of molecular data in lichen systematics provides an important alternative to traditional morphological characters for identifying natural groups and assessing evolutionary histories in challenging lichen taxa. In this work, I examined two common lichen-forming genera in western North America, Rhizoplaca and Xanthoparmelia, as models for investigating character evolution, species delimitation in morphologically and chemically diverse species, and identification of lineages in the early stages of divergence. Phylogenetic hypotheses were reconstructed to assess character evolution using sequence data from four nuclear ribosomal markers and fragments from two nuclear loci. I applied a multifaceted approach to delimit species in Rhizoplaca and Xanthoparmelia by assembling multiple lines of evidence using DNA sequence data, and genealogical and population genetic analyses. I have found that traditionally circumscribed species are not supported by molecular data. For example, in Rhizoplaca previously unrecognized lineages were identified within what has thus far been considered a single species. In contrast, morphologically and chemically distinct species within Xanthoparmelia were not supported by molecular data. Distinct medullary chemistries, growth forms, and the production of vegetative diaspores appear to have evolved independently multiple times in Xanthoparmelia. This work clearly indicates that morphological and chemical characters do not always accurately reflect lichen species diversity within even the best known and studied genera. My study of the Rhizoplaca melanophthalma species complex demonstrates that the genus Rhizoplaca, as presently circumscribed, is more diverse in western North American than previously thought. I present these analyses as a working example of species delimitation in morphologically cryptic lichenized fungi. In Xanthoparmelia diagnostic morphological and chemical characters have evolved in a highly homoplasious manner. In contrast to other studies documenting previously undiscovered fungal lineages masked within lichen species circumscribed by traditional morphological and chemical characters, my work suggests that species diversity has been overestimated in the lichen genus Xanthoparmelia.

Lichens are an important part of the biota in western Oregon forests, where they perform valuable ecological roles and contribute significantly to biodiversity. Lichens in western Oregon are threatened by a number of factors including air pollution and land use practices. If we wish to maintain the persistence of lichens in future landscapes it is critical that we understand the responses of lichen communities and individual lichen species to the environment and forest structure. This dissertation explores factors that are related to differences in lichen community composition and the distributions of individual lichen species in the western Cascades of Oregon, using a large landscape scale data set. I sought to relate major gradients in lichen community composition to environmental factors, and describe differences in lichen communities with respect to forest age (Chapter 2). I found three major gradients in lichen communities at a landscape scale in the western Oregon Cascades. These gradients were related to climate as expressed by elevation and annual temperature, air quality, north-south position, the richness of epiphytic macrolichens, and forest age. I developed a rarity score, which can be used to identify hotspots of rare species diversity at a landscape scale (Chapter 3). I then built descriptive models of this rarity score to identify abiotic and biotic factors associated with the occurrence of rarity hotspots. I found that models of rarity score that used explanatory variables based on lichen community composition performed better than models that used explanatory variables based solely on environmental factors. I narrowed my focus to the level of individual species responses to the environment and forest structure by developing habitat models for 11 lichen species in the western Cascades (Chapter 4). We selected these species because they performed important ecological roles, were rare across the landscape and associated with old growth forests, or because their distributions were poorly understood. These models can be used to increase the efficiency of landscape level surveys for rare species, predict the response of these species to forest management practices, and understand factors associated with the distributions of these lichens. / Graduation date: 2006

Les lichens, organismes symbiotiques associant un champignon et un partenaire photosynthétique (algue verte et/ou cyanobactérie), sont caractérisés par la biosynthèse de métabolites secondaires uniques dotés de bioactivités variées. Pour valoriser au mieux cette ressource privilégiée, des méthodes innovantes de spectrométrie de masse ont été développées dans le but de minimiser la préparation de l’échantillon et la durée des analyses. Deux techniques de spectrométrie de masse ont été évaluées en ce sens : le DART-MS et le LDI-MS. L’apport de chacune de ces deux méthodes a pu être établi sur un large panel de lichens, représentant une part importante de l’espace chimique couvert par ces organismes. Il a été démontré que des profils chimiques complets pouvaient être obtenus respectivement à partir de thalles lichéniques et d’extraits acétoniques totaux. Compte tenu de la très large utilisation de la CCM pour l’analyse chimique de lichens, les possibilités offertes par le couplage de la CCM à l’ionisation electrospray ont également été explorées. Une seconde partie de ces travaux avait pour but de cartographier la distribution des métabolites secondaires au sein du thalle lichénique. À ces fins, des analyses d’imagerie LDI ont été réalisées sur une coupe transversale d’un lichen crustacé modèle : Ophioparma ventosa. Ce lichen a été étudié en phytochimie pour identifier six napthopyranones à partir des apothécies dont quatre nouvelles structures. Les principaux métabolites de ce lichen ont pu être imagés par LDI-MSI avec une résolution spatiale de 50 μm environ. Une corrélation entre la distribution des molécules et leur rôle écologique présumé permet d’avancer des hypothèses d’écologie chimique. Des approches conjointes reliant histolocalisation et étude génétique des partenaires de la symbiose ont été entreprises. La recherche des gènes de la biosynthèse de la mycosporine sérinol chez les symbiontes isolés de Lichina pygmaea par microdissection capture laser a été initiée en ce sens. D’autres approches innovantes comme l’analyse cristallographique par diffraction de poudre par les rayons X sont également abordées dans ce document articulé autour de six publications issues de ce travail et de deux articles en cours de soumission. / Lichens are self-sustaining symbiotic partnerships comprising a fungus associated with a green alga and/or a cyanobacteria. This consortium produces unique secondary metabolites that are endowed with various biological activities. To harness this privileged chemodiversity, innovative mass spectrometry techniques were developed in the course of this study to accelerate the dereplicative holdup through both a minimal sample preparation and a decrease of the time of analysis. Two approaches were considered during this work: DART-MS and LDI-MS and their adequacy for lichen dereplication was assessed on a vast array of samples encompassing a wide range of metabolites. Both of them facilitated complete chemical profiles, respectively from unprocessed lichen material and crude acetone extracts. Since TLC still enjoys a wide-spread popularity among lichenologists, the advantages offered by TLC-ESI-MS hyphenation were evaluated as well. A second part of this manuscript focused on the histolocalization of lichen metabolites. For this purpose, LDI mass spectrometry imaging studies were undertaken on the crustose lichen Ophioparma ventosa. The phytochemical investigation of this species afforded the isolation of six naphthopyranones from its apothecia, four of them being new molecules. LDI-MSI revealed the distribution patterns of all the main metabolites of this lichen, reaching a spatial resolution of 50 μm. Most interestingly, the distribution pattern of imaged metabolites within the thallus is highly organized and is related to their ecological relevance. Joint strategies combining histolocalization and genetic investigation of lichen symbionts separated using laser capture microdissection were also considered. As such, an investigation of the biosynthesis of mycosporine serinol within Lichina pygmaea dissociated symbionts was initiated. Further analytical strategies such as X-ray powder diffraction are introduced in this thesis that contains six publications and two drafts to be submitted.

La contamination atmosphérique par les métaux/métalloïdes (As, Cd, Cu, Pb, Sb, Zn…) et par les composés azotés impacte durablement les écosystèmes. L’évaluation des dépôts atmosphériques responsables de ces effets néfastes reste éparse car complexe, en particulier dans les environnements éloignés des sources de contamination comme les massifs forestiers. La prospection et l’estimation des éléments traces et de l’azote apportés dans ces dépôts ont été réalisées à l’échelle nationale à travers deux approches de biosurveillance par les lichens et les mousses : la bioaccumulation et la bioindication. L’enregistrement des éléments traces par les organismes indique une forte pression lithogénique dans ces milieux éloignés des sources directes, qui s’inclut dans le bruit de fond géochimique (e. g. Al, As, Co, Cr, Fe, Ni et Ti). Des sources additionnelles issues des activités anthropiques plus locales complètent régionalement les cortèges des éléments chimiques enregistrés (Cd, Cu, Sb ou Zn). La comparaison des échantillons de lichens et de mousses avec des spécimens historiques d’herbiers nous permet de retrouver ce contexte régional durant les siècles passés, et notamment de conforter les signatures lithologiques à travers le temps grâce aux terres rares. Ainsi, l’utilisation du charbon fossile apparaît être la source de contamination métallique dominante durant la fin du XIX e siècle et le début du XX e siècle, et plus récemment, une source additionnelle comme le transport routier (cas de Pb) a pu être notée. En parallèle, des facteurs influençant la bioaccumulation des métaux ont été testés : l’espèce considérée joue sur la capture des particules atmosphériques à travers la morphologie du thalle, et l’écorce support ne présente que peu d’influence. En considérant les signatures des dépôts atmosphériques, la végétation au travers des pluviolessivats apparaît influencer davantage les mousses terricoles que les lichens corticoles, ces derniers étant plus représentatifs des dépôts totaux. Des expérimentations de sorption/désorption montrent un processus rapide d’accumulation (une semaine) pour Pb et Cd, mais ne montrent ni compétition entre les métaux bioaccumulés, ni influence du lessivage sur la bioaccumulation. De nouvelles données concernant la sensibilité des espèces lichéniques face aux polluants métalliques ont pu être obtenues à partir de relevés de bioindication couplés à des analyses statistiques multivariées. / The atmospheric contamination by metals/metalloids (As, Cd, Cu, Pb, Sb, Zn…) and by nitrogen compounds impact the ecosystems. The atmospheric deposition is responsible of these harmful effects and its evaluation is complex and missing, particularly in remote environments like forest areas. The monitoring of trace element and nitrogen deposition at the national scale is carried out through two different approaches of biomonitoring by lichens and mosses: bioaccumulation and bioindication. The metal bioaccumulation points out a strong lithogenic pressure in these remote areas that is included in the geochemical background (e. g. Al, As, Co, Cr, Fe, Ni and Ti). Additional sources from more local anthropogenic activities are responsible for the regional context by the accumulation of other chemical elements (Cd, Cu, Sb or Zn). The comparison of current samples with herbarium specimens allows us getting back to historical regional influence one and half century ago, including consolidating the lithological influence over the time by rare earth elements. The use of fossil coal appears as a dominant source of metallic contamination in the late 19th century and the beginning 20th century. In parallel, the factors influencing the bioaccumulation of metals were evaluated: the entrapment of atmospheric particles is influenced by the morphology of the thallus but not by the bark. Considering the atmospheric deposition signature, vegetation via throughfall was found to be more influent for terricolous mosses than for corticolous lichens. Additional experiments of sorption/desorption showed a quick accumulation process (one week) for Pb and Cd, but neither metal competition, nor leaching influence on bioaccumulation were highlighted. New data on lichen species sensitivity to metal pollutants have been compiled through multivariate statistical analysis

Les interactions « lichen-lichénophage » sont médiées par la présence de métabolites au sein des lichens qui peuvent influer sur les préférences alimentaires des lichénophages. Dans le contexte environnemental du Subantarctique, à faible biodiversité animale et « végétale », une étonnante richesse lichénique a contribué au succès de l’unique Gastéropode terrestre endémique, Notodiscus hookeri. Pour mieux comprendre les mécanismes en jeu, nous avons analysé les préférences alimentaires de cet escargot lichénophage et tenté de cibler les traits-clés des lichens qui modulent l’interaction trophique. À partir d’observations et de prélèvements réalisés sur l’île de la Possession (Archipel Crozet, Terres Australes et Antarctiques Françaises), deux étapes décisives de l’interaction ont été étudiées : (i) le comportement alimentaire de l’escargot en situation de choix nutritionnel, (ii) sa réponse gustative face à des métabolites en situation de non choix. Le broutage préférentiel de certaines parties de lichen a été confronté à l’analyse de la combinaison entre la teneur des métabolites secondaires et celle des métabolites primaires. La localisation des métabolites au sein du thalle de trois espèces lichéniques fréquentes sur l’île et consommées par l’escargot (Argopsis friesiana, Pseudocyphellaria crocata et Usnea taylorii) a été effectuée par l’intermédiaire de techniques chromatographiques et spectrométriques (LC-DAD-MS, GC-MS, microdissection couplée à la LC-DAD-MS, DART-MS) ainsi que par des techniques d’imagerie couplées à la spectrométrie de masse ((MA)LDI-MS). N. hookeri se révèle être une espèce généraliste et opportuniste qui se nourrit de la majorité des lichens auxquels il est confronté. Cependant, il opère des choix en se nourrissant des parties ayant une valeur nutritive élevée et ce, en dépit de la présence de métabolites secondaires potentiellement répulsifs. Plusieurs mécanismes permettant à l’escargot de contrer la toxicité de certains métabolites ont également été décrits dans ce travail. Les choix alimentaires de N. hookeri s’avèrent par conséquent répondre à un compromis entre le bénéfice d’absorption de métabolites appétents à forte valeur nutritive et le coût physiologique (détoxication, clivage, excrétion) engendré par l’ingestion de métabolites répulsifs. En conclusion, trois paramètres-clés au moins seraient à prendre en compte lors des futures études d’interactions entre lichens et lichénophages : il s’agit de la nature et de la teneur des métabolites secondaires, de la teneur en azote ainsi que de la quantité de sucres et de polyols. Les techniques d’imagerie ont fourni une voie nouvelle et prometteuse pour cibler les dégâts opérés par un phytophage. En effet, cette approche permet de mieux apprécier la distribution hétérogène au sein du thalle entre les métabolites. Pour cet escargot terrestre, les ratios de composés « appétents/inappétents » semblent jouer un rôle majeur dans la sélection de nourriture. / Lichen-lichenivore interactions are mediated by the presence of metabolites in lichens, which may impact lichenivore food preferences. In the environmental context of the Subantarctic, with a low animal and “plant” biodiversity, the surprising lichen flora contributed to the success of a the only endemic subantarctic land Gastropod, Notodiscus hookeri. To better understand the snail-lichen interactions, we analyzed the food preferences of this lichenivore snail and tried to pinpoint key lichen traits modulating the trophic interaction. From observations and samplings realized on Possession Island (Crozet Archipelago, Terres Australes et Antarctiques Françaises), two decisive stages of the interaction were studied: (i) the snail feeding behavior in situation of nutritional choice, (ii) its gustatory response when facing isolated metabolites in no-choice situations. Preferential grazing of some lichen parts was linked to both secondary and primary metabolites concentrations. Intrathalline localization of metabolites was performed in three lichen species consumed by the snail and widespread on Possession Island (Argopsis friesiana, Pseudocyphellaria crocata and Usnea taylorii), using chromatographic and spectrometric techniques (LC-DAD-MS, GC-MS, microdissection coupled to LC-DAD-MS, DART-MS) and imaging mass spectrometry ((MA)LDI-MS). N. hookeri appears to be a generalist and opportunistic gastropod, feeding on most lichen species encountered. However, it is able to discriminate between lichen parts, preferentially grazing on parts with the highest nutrient value, in spite of the presence of potential deterrent secondary metabolites. We described several mechanisms helping snails to overcome the toxicity of some lichen metabolites. Snail feeding choices result in trade-off between benefits of absorbing appetent metabolites of high nutritive value and the cost of physiological processes (detoxification, cleavage and excretion) caused by the ingestion of deterrent metabolites. To conclude, three main key parameters might be relevant in future to study the interactions between lichens and lichenivores. They correspond to the nature, the histolocalisation and the content of secondary metabolites balanced by the amount of nitrogen along with sugars and polyols. Imaging techniques have provided a new and promising way to visualize the heterogeneous distribution within the thallus between these metabolites. The ratios of appetent/non appetent compounds are likely to play a major role in food selection by this land snail.