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  • About
  • The Global ETD Search service is a free service for researchers to find electronic theses and dissertations. This service is provided by the Networked Digital Library of Theses and Dissertations.
    Our metadata is collected from universities around the world. If you manage a university/consortium/country archive and want to be added, details can be found on the NDLTD website.
61

Ljungan Virus Replication in Cell Culture

Ekström, Jens-Ola January 2007 (has links)
Ljungan virus (LV) is a recently identified picornavirus of the genus Parechovirus. LV has been isolated from voles trapped in Sweden and also in the United States. LV infected small rodents may suffer from diabetes type 1 and type 2 like symptoms, myocarditis and encephalitis. LV has been proposed as a human pathogen, with indications of causing diabetes type 1, myocarditis and intrauterine fetal deaths. In this thesis, cell culture adapted LV strains were utilised for development and adaptation of several basic methodological protocols to study the LV biology, e.g. real time PCR, highly specific antibodies and a reverse genetics system. These methods allowed detailed studies of this virus and how it interacts with the host cell. The genomic 5'-end was identified and modelling showed unique secondary structure folding of this region. The LV encodes an aphthovirus-like 2A protein with a DvExNPGP motif. This motif was found to mediate primary cleavage of the LV polyprotein in vitro and is proposed to constitute the carboxy terminus of the structural protein VP1 in LV. Rabbit polyclonal antibodies generated against recombinant structural proteins were used to verify that the LV virion is composed of the structural proteins VP0, VP1 and VP3. Cell culture studies showed that LV replicates to low titer with an absent or delayed cell lysis. LV is proposed to be able to spread by a, for picornaviruses, not previously demonstrated direct cell-to-cell transmission. All results taken together suggest a maintenance strategy of LV including low amounts of the LV genome and persistently infected hosts. Stability studies showed that the LV virion not only maintain activity in acidic and alkaline environments but also exhibit resistance to the commonly used disinfectant Virkon®.The results presented in this thesis show that LV has several unique properties, not previously observed for a picornavirus.
62

Factors Affecting How Well Bacterial Whole Genome Sequencing Reads Assemble

Linda, Mustafa January 2021 (has links)
Recently Whole Genome Sequencing (WGS) has become the new high-resolution tool used to trace the source of foodborne outbreaks. There are often only a few genetic differences that can distinguish closely related bacterial isolates, and variability in data quality between different laboratories may influence the results. In this project, a data set from ten laboratories where the same bacterial samples were sequenced using different library preparation kits and sequencing methods in an interlaboratory study, has been used. Factors that could be responsible for the different performance in terms of how well the raw WGS data from the different labs assembles were investigated. The raw data from the different labs assembled very differently. One lab showed adapter sequences in their reads and filtering them improved the assembly substantially. All labs utilizing the transposase-based library preparation kit Nextera, had base composition bias in the beginning of the reads. For many labs, as the coverage was increased, the number of contigs first increased and then decreased. This was due to low number of contaminating reads from other species. However, these contaminations were barely visible in the plots generated by Kraken/Krona. Filtering out contigs with very low coverage removed this problem. Two labs performed much worse than the others. Some of their reads showed quality drop towards the ends, whereas their data also had the longest read length. However, quality trimming the read ends did not improve the assembly. These two labs had higher GC content in their reads compared to the other labs, the reason for this needs further investigation.
63

Vårdrelaterade infektioner : Sjuksköterskans erfarenheter av förebyggande arbete mot vårdrelaterade infektioner / Hospital-Acquired Infections : Nurse's experiences of the preventive work of Hospital-Acquired Infections

Sara, Mobin, Espakou, Karim Pour January 2022 (has links)
Background: Health-related infections (VRI) have a negative impact on public health and cause suffering for the patient and costs to society. Problematization: VRI is a patient safety problem and risks affecting both patient and nurse. Aim: The aim of the study was to describe nurses' experiences of preventive work against healthcare-associated infections. Method: A literature review based on 11 articles based on a qualitative method was analyzed through thematization. Results: The results showed that the nurses had varied attitudes to hygiene and prevention of infections. Some experienced the need for training to better prevent infections, while others showed different considerations for maintaining hygiene in the workplace, depending on previous experience and the opportunities offered by the nursing environment. The nurses experienced a challenging work environment with a high workload and a lack of work motivation. They wanted their nursing environment to be upgraded to increase the chances of infection prevention. Conclusion: One conclusion and implication were that nurses need to take more consideration to each patient's individual need in the prevention work against infections. Continued research can examine patients 'experiences of nurses' work towards VRI.
64

Safety and Stability of Samples Stored on Filter Paper for Molecular Arbovirus Diagnosis

Bringeland, Emelie January 2021 (has links)
Expanding urbanization, climate change, and population growth contribute to increased transmission and spread of arthropod-borne viruses (arboviruses), many of which cause severe disease in humans. Pathogenic arboviruses include dengue, Zika, tick-borne encephalitis, and sindbis viruses, which together threaten more than half the global population. Thus, there is a constant need for safe, specific, and sensitive molecular tests to identify early-stage infections for accurate diagnosis and molecular epidemiological data for disease prevention and control. The study tested the biosafety of using FTA™ cards when working with pathogenic arboviruses by conducting an infectivity assay using sindbis virus. Conditions for RNA extraction and storage of arboviruses on FTA were analyzed by measuring viral RNA (vRNA) stability using a SYBR-Green, Pan-Flavi RT-qPCR method composed of degenerate primers able to detect a variety of flaviviruses. Data from a Pan-Flavi RT-qPCR study comprising of 222 clinical blood and serum samples collected from a 2018 dengue virus outbreak in Hanoi (Vietnam) was analyzed to establish applicability of FTA for molecular epidemiology and diagnosis. Results showed that sindbis virus infectivity was inhibited by FTA-adsorption. FTA-adsorbed arboviruses were extracted with the highest yield using Trizol extraction and were preserved at storage at 4-20ºC for up to 30 days. The results showed that clinical blood samples acquired higher yields of vRNA for molecular testing than serum samples and that it may be possible to perform sequencing for genomic analysis. The study suggests that FTA cards may facilitate the storage and transportation of adsorbed arboviruses for downstream molecular epidemiological and diagnostic tests.
65

Inte bara hus som hus : Ett underlag till diskussion kring ett lämpligt innehåll i en samtida arkitekturpolitik i Lidköpings kommun / Not Just Houses as Houses : A basis for discussion about a suitable content in a contemporary architectural policy in Lidköping municipality

Wennstam, Lisa January 2022 (has links)
Under 2018, mitt i en global miljökris, en nationell ökning av sociala klyftor och segregation, accepterade den svenska regeringen en ny nationell arkitekturpolitik, Politik för Gestaltad livsmiljö (Policy for Designed Living Environment). Politiken är förankrad i en marknadsekonomi och förmedlar olika strategier för hållbar utveckling. De sträcker sig från social hållbarhetsteorier om inkludering och tillgänglighet, ner till resurshantering, lokalt hantverk och återvinning av byggmaterial. Politiken är ett resultat av en förändrad förståelse för arkitektur, arkitekturpolitik, arkitekten och hans eller hennes roll, eller som teoretiker Kaminer och Kossak skulle hävda: roller. Detta arbete i Hållbar samhällsplanering och stadsutformning utforskar och presenterar vad som kan vara ett relevant innehåll i arkitekturbestämmelser i Lidköpings kommun. Det är resultatet av en dokumentstudie som innehåller den svenska nationella arkitekturpolitiken, lokala tolkningar av den i 12 kommuner över hela Sverige och Lidköpings kommuns Stadsutvecklingsplan för staden Lidköping. Samt, en enkät och en utökad dialog i form av en designworkshop med sex ungdomar i Lidköping om Lidköpings framtid. Detta projekt syftar till att stödja utvecklingen av lokala tolkningar av den svenska nationella politiken, och fungera som en bas för diskussion kring ämnet arkitekturpolitik i Sverige. / In 2018, in the midst of a global environmental crisis, a national increase in social gaps and segregation, the Swedish government accepted a new national architectural policy, Politik för Gestaltad livsmiljö (Policy for Designed Living Environment). The policy is situated in a market economy and conveys different strategies for sustainable development. They range from social sustainability theories of inclusion and accessibility, down to resource management, local craftsmanship and recycling of building materials. The policy is a result of a changing understanding of architecture, architectural politics, the architect and his or her role, or as theorists Kaminer and Kossak would argue, roles. This Master’s degree project in Sustainable Urban Planning and Design explores and puts forth what could be a relevant content in an architectural policy in Lidköping municipality. It is the result of a document study containing the Swedish national architectural policy, local interpretations of it by 12 municipalities across Sweden and Lidköping municipality’s City plan. As well as a questionnaire and an extended dialogue in the shape of a design workshop with six teenagers in Lidköping about the future of their town. This project aims to aid the development of local interpretations of the Swedish national policy, and, act as a base for discussion on the topic of architecture politics in Sweden.

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