Il existe différentes techniques de manipulation et de détection de molécules uniques. Parmi elles, la mesure du courant ionique traversant un pore nanométrique unique est la plus ancienne. Le travail effectué dans cette thèse utilise cette technique et s'articule autour de deux objectifs. Tout d'abord, l'utilisation d'un nanopore unique obtenu par attaque de trace permet d'imiter les expériences déjà faites dans la littérature avec d'autres types de pores. Certains phénomènes, tels que la rectification par exemple, ont pu être observés, mais d'autres comme la translocation n'ont pu l'être. Ensuite, une étude du bruit de conductance électrique démontre l'existence d'un phénomène qui n'avait jusqu'alors pas été soulevé dans la littérature. En effet, ce bruit ne peut pas être imputé aux fluctuations des caractéristiques de la géométrie du pore ou de sa paroi, mais plutôt à des effets coopératifs sur la mobilité des ions dans un milieu confiné.

Nanopore-based single-molecule analysis of biomolecules such as DNA and proteins is a subject of strong scientific and technological interest. In recent years, solid state nanopores have been demonstrated to possess a number of advantages over biological (e.g., ion channel protein) pores due to the relative ease of tuning the pore dimensions, pore geometry, and surface chemistry. However, solid state fabrication methods have been limited in their scalability, automation, and reproducibility. In this work, a wafer-scale fabrication method is first demonstrated for reproducibly fabricating large arrays of solid-state nanopores. The method couples the high-resolution processes of electron beam lithography (EBL) and atomic layer deposition (ALD). Arrays of nanopores (825 per wafer) are successfully fabricated across a series of 4' wafers, with tunable pore sizes from 50 nm to sub-20 nm. The nanopores are fabricated in silicon nitride films with thicknesses varying from 10 nm to 50 nm. ALD of aluminum oxide is used to tune the nanopore size in the above range. By careful optimization of all the processing steps, a device survival rate of 96% is achieved on a wafer with 50 nm silicon nitride films on 60- 80 micron windows. Furthermore, a significant device survival rate of 88% was obtained for 20 nm silicon nitride films on order 100 micron windows. In order to develop a deeper understanding of nanopore fabrication-structure relationships, a modeling study was conducted to examine the physics of EBL, in particular: to investigate the effects of beam blur, dose, shot pattern, and secondary electrons on internal pore structure. Under the operating conditions used in pore production, the pores were expected to taper to a substantially smaller size than their apparent size in SEM. This finding was supported by preliminary conductance readings from nanopores.

Well dispersed aqueous suspensions containing single-walled carbon nanotubes (SWCNTs) from bulk powders were prepared with surfactant and without surfactant by acid functionalization. SWCNT coated electrodes were then prepared from the SWCNT aqueous suspensions using various methods to create uniform nanoporous networks of SWCNTs on various substrates and stainless steel (SST) current collectors for use as ultracapacitor electrodes. Drop coating, high voltage electro-spraying (HVES), inkjet printing, and electrophoretic deposition (EPD) methods were evaluated. Optical and scanning electron microscope images were used to evaluate the SWCNT dispersion quality of the various electrodes. Ultimately an EPD process was established which reliably produced uniform SWCNT nanoporous networks on SST substrates. The prepared SWCNT coated electrodes were characterized using cyclic voltammetry and their capacitance was determined. A correlation between extended EPD processing times, EPD processing temperatures, and electrode capacitance was quantified. Optimum EPD processing occurs where linear capacitance gains were observed for processing times less than 10 minutes. At processing times between 10 – 60 minutes a non-linear relationship demonstrated diminishing capacitance gains with extended EPD processing times. Likewise, optimum EPD processing occurs when the processing temperature of the SWCNT suspension is raised above room temperature. At processing temperatures from 45°C to 60°C an increase in capacitance was observed over the room temperature (22°C) electrodes processed for the same durations. Conversely, for processing temperatures less than room temperature, at 5°C, a decrease in capacitance was observed. It was also observed that SWCNT electrodes processed at 60°C processing temperatures resulted in 4 times the capacitance of 5°C electrodes for the same processing times, when the durations were 8 minutes or less. For samples with raised processing temperatures the time dependent capacitance gains were observed to be significantly diminished beyond 10 minute processing times. The SWCNT network thickness was also correlated to EPD processing temperature and capacitance. A linear relationship was identified between the SWCNT network thickness and the capacitance of the electrode. It was also observed that elevated processing temperatures increase the EPD deposition rate of SWCNTs, produce thicker SWCNT networks, and thus create electrodes with higher capacitance than electrodes processed at lower EPD processing temperatures. EPD of SWCNTs was demonstrated in this work to be an effective method for the fabrication of SWCNT ultracapacitor electrodes. Characterization of the process determined that optimal EPD processing occurs within the first 10 minutes of processing time and that elevated processing temperatures yield higher SWCNT deposition rates and higher capacitance values. In this work the addition of SWCNT nanoporous networks to SST electrodes resulted in increases in capacitance of up to 398 times the capacitance of the uncoated SST electrodes yielding a single 1cm2 electrode with a capacitance of 91mF and representing an estimated specific capacitance for the processed SWCNT material of 45.78F/g.

Structure and dynamics of nanoconfined glass-forming oligomers and diblock coplymers (BPCs) are investigated by a combination of infrared transition moment orientational analysis (IR-TMOA), positron annihilation lifetime spectroscopy (PALS), grazing incidence small angle X-ray scattering (GISAXS), atomic force microscopy (AFM), scanning electron microscopy (SEM) and broadband dielectric spectroscopy (BDS). The oligomers probed are the van der Waals type, tris(2-ethyhexyl)phosphate (TEHP) and the self-associating molecules of 2-ethyl-1-hexanol (2E1H). Symmetric and asymmetric poly(styrene-b-1,4-isoprene) P(S-b-I) are studied for the case of BCPs. The samples are confined either in one-dimensional (1D) in form of thin films or in 2D (nanopores) geometrical constraints. The molecular order of TEHP in nanopores as studied by IR-TMOA shows that about 7% of the molecules are preferentially oriented perpendicular to the long axis of the pores due to their interaction with the pore walls. PALS results reveal that 2E1H confined in nanopores exhibit larger free volume with respect to the bulk. In thin films (1D), P(S-b-I) having volume fraction of isoprene blocks f(PI)= 0.55 exhibits randomly oriented lamellae and their thicknesses are directly proportional to the film thickness d(film). For f(PI) = 0.73, perpendicular cylinders with respect to the substrate are observed for d(film)>50 nm but they lie along the substrate plane when d(film) < 50 nm. In AAO pores (2D) with average pore diameter d(pore) of 150 nm, straight nanorods are formed which change to helical structures in 18 nm pores. Molecular dynamics of 2E1H and TEHP constrained in nanopores (2D), is influenced by the interplay between confinement and surface effects. Confinement effects show up as an increase in the structural relaxation rate with decreasing pore sizes at the vicinity of the glass transition temperature. This is attributed to the reduced packing density of the molecules in pores as quantified by PALS results for 2E1H. Whereas the orientation and morphologies of the domains in P(S-b-I) and the chain dynamics of isoprene chains are influenced by the finite--size and dimensionality of confinement, the segmental motion, related to the dynamic glass transition (DGT) of both styrene and isoprene blocks remains unaffected-in its relaxation time-within experimental accuracy. Effects of nanoscale confinement on the molecular dynamics therefore depend on a number of factors: the type of molecules (polymers, low molecular liquids), interfacial interactions and the dimensionality of the constraining geometries.

L'augmentation de capacité observée récemment dans les carbones nanoporeux ouvre la voie vers de nouvelles optimisations des supercondensateurs. La compréhension des phénomènes microscopiques à l'origine de cette augmentation de capacité est l'objet de cette thèse. Nous utilisons la dynamique moléculaire pour simuler des supercondensateurs modèles. Nos simulations présentent des caractéristiques originales : nous représentons l'électrolyte par un modèle gros grains, les électrodes par une structure poreuse complexe, et nous maintenons ces électrodes à un potentiel électrique constant. À partir de nos simulations, nous avons montré que l'augmentation de capacité dans les carbones poreux est le résultat d'une modification importante de la structure du liquide à l'interface avec l'électrode. Plus précisément, le confinement empêche la formation de couches successives de liquide qui ont tendance à diminuer l'efficacité du stockage de charge. Nous présentons également plusieurs méthodes de détermination de la capacité par dynamique moléculaire. L'utilisation d'une structure poreuse complexe et l'inclusion de la polarisation des électrodes nous permettent de caractériser finement la corrélation entre le confinement et l'efficacité du stockage de charge. Enfin, nous étudions les phénomènes dynamiques survenant au sein des supercondensateurs, cette dernière partie permettant d'envisager dans le futur une caractérisation de la puissance des supercondensateurs par dynamique moléculaire.

Nanopores (1 – 10 nm diameter) constructed in solid-state membranes, have shown promise as next-generation biopolymer analysis devices offering both high resolution and high throughput. One promising application of nanopores is in the analysis of nucleic acids, such as DNA. This involves translocation experiments in which DNA is placed in an ionic solution and is forced through a nanopore with the aid of an applied electric field. The modulation of ionic current through the pore during DNA translocation can then be correlated to various properties of the biopolymer such as the length. To optimally design and operate nanopore devices, it would be advantageous to develop an accurate computer simulation methodology to predict the physics of the translocation process. Hence, I have developed a physically accurate, computationally efficient simulation methodology to predict and analyze the physics of biopolymer translocation through solid-state (silicon nitride) nanopores. The overall theme of this thesis is to use this simulation methodology to thoroughly investigate important issues in the physics underlying translocation experiments and thereby determine the effects of key structural and operation parameters, such as nanopore dimensions, applied voltage, hydrodynamic interactions, solvent viscosity, and the polymer chain length. The results from these simulation studies can assist in not only proper nanopore design, but also help determine the proper experimental environments and parameters for nanopore operation.

Well dispersed aqueous suspensions containing single-walled carbon nanotubes (SWCNTs) from bulk powders were prepared with surfactant and without surfactant by acid functionalization. SWCNT coated electrodes were then prepared from the SWCNT aqueous suspensions using various methods to create uniform nanoporous networks of SWCNTs on various substrates and stainless steel (SST) current collectors for use as ultracapacitor electrodes. Drop coating, high voltage electro-spraying (HVES), inkjet printing, and electrophoretic deposition (EPD) methods were evaluated. Optical and scanning electron microscope images were used to evaluate the SWCNT dispersion quality of the various electrodes. Ultimately an EPD process was established which reliably produced uniform SWCNT nanoporous networks on SST substrates. The prepared SWCNT coated electrodes were characterized using cyclic voltammetry and their capacitance was determined. A correlation between extended EPD processing times, EPD processing temperatures, and electrode capacitance was quantified. Optimum EPD processing occurs where linear capacitance gains were observed for processing times less than 10 minutes. At processing times between 10 – 60 minutes a non-linear relationship demonstrated diminishing capacitance gains with extended EPD processing times. Likewise, optimum EPD processing occurs when the processing temperature of the SWCNT suspension is raised above room temperature. At processing temperatures from 45°C to 60°C an increase in capacitance was observed over the room temperature (22°C) electrodes processed for the same durations. Conversely, for processing temperatures less than room temperature, at 5°C, a decrease in capacitance was observed. It was also observed that SWCNT electrodes processed at 60°C processing temperatures resulted in 4 times the capacitance of 5°C electrodes for the same processing times, when the durations were 8 minutes or less. For samples with raised processing temperatures the time dependent capacitance gains were observed to be significantly diminished beyond 10 minute processing times. The SWCNT network thickness was also correlated to EPD processing temperature and capacitance. A linear relationship was identified between the SWCNT network thickness and the capacitance of the electrode. It was also observed that elevated processing temperatures increase the EPD deposition rate of SWCNTs, produce thicker SWCNT networks, and thus create electrodes with higher capacitance than electrodes processed at lower EPD processing temperatures. EPD of SWCNTs was demonstrated in this work to be an effective method for the fabrication of SWCNT ultracapacitor electrodes. Characterization of the process determined that optimal EPD processing occurs within the first 10 minutes of processing time and that elevated processing temperatures yield higher SWCNT deposition rates and higher capacitance values. In this work the addition of SWCNT nanoporous networks to SST electrodes resulted in increases in capacitance of up to 398 times the capacitance of the uncoated SST electrodes yielding a single 1cm2 electrode with a capacitance of 91mF and representing an estimated specific capacitance for the processed SWCNT material of 45.78F/g.

O estudo do processo de fusão e solidificação da água contida dentro de materiais confinantes tem sido amplamente discutido em química, biologia, física, geologia, e com diversas aplicações tecnológicas, tais como aplicação na fabricação de etanol de segunda geração, ou etanol celulósico, separação de fases, fabricação de nanomateriais. Pesquisas mostraram que as temperaturas de transição da água nanoconfinada são muito sensíveis ao diâmetro do poro, mas que podem ser pouco afetadas pela natureza, hidrofóbica ou hidrofílica, da superfície do poro. Outra importante constatação em experimentos de fusão e congelamento em nanoporos é que nem toda água presente nos poros pode ser cristalizada até gelo. A existência de uma camada de água pré-fundida em nanoporos tem sido confirmada através de experimentos. Com o objetivo de entender mais profundamente como a temperatura de transição da água confinada depende da natureza da parede confinante e do tamanho do confinamento, propõe-se um modelo de nanoporos de celulose para o confinamento, onde varia-se o diâmetro e comprimento do nanoporo, além da natureza da parede do nanoporo. Nossos estudos, mostram que para sistemas hidrofóbicos, com formação de camada de água líquida na parede, as temperaturas de transição variam desde relativamente baixas, para menores valores de calor latente, até atingindo a temperatura de transição da água bulk, para calor latente mais alto. Enquanto que para sistemas hidrofílicos, para nenhum dos valores de calor latente trabalhados, e para nenhum tamanho do sistema, a temperatura de transição atinge o valor de bulk. / The study of the fusion process and water solidification inside confining materials has been widely discussed in Chemistry, Biology, Physics, and Geology, and has various technological applications as the usage and fabrication of second generation ethanol or cellulosic ethanol, phase separation, and nanomaterials fabrications. Researches have shown that nanoconfined water’s transition temperature are highly sensitive to the pore. Another interesting remark on freezing and fusion experiments on nanopores is that not all water present in pores can be crystallized into ice. The existence of a water layer pre-melted on nanopores has been confirmed through experiments. Aiming at understanding deeply how water’s transition temperature depends on the nature of the confining wall and size, a cellulose nanopore model is proposed to the confinement, where the nanopore diameter and length are varied, besides the nature of the wall of the nanopore. Our studies show that for hydrophobic systems, with the liquid water layer formation on the wall, the transition temperatures vary from relatively low latent heat to smaller values, even reaching the temperature transition on bulk water to higher latent heat. While for hydrophilic systems, for none of the latent heat used and no system size the transition temperature reaches bulk value.

Neste trabalho propomos uma investigação através de simulações de dinâmica molecular da água em contato com superfícies hidrofóbicas e hidrofílicas, tanto dentro de nanotubos funcionalizados quanto em membranas bi-dimensionais para dessalinização. No caso da água em contato com superfícies hidrofóbicas e hidrofílicas de nanotubos nós encontramos uma quebra na relação de Stokes-Einstein para a difusão e a viscosidade da água. Essa quebra ocorre para os menores nanotubos − em que pelo menos duas camadas de água formam-se, condição para deslizamento de camadas necessária para o cálculo da viscosidade. O mecanismo por trás deste comportamento é ditado pela estrutura da água confinada. Esse resultado indica que algumas das características observadas para a água dentro de nanotubos hidrofóbicos, como nanotubos de carbono na natureza, são únicas. Encontramos uma grande dependência da dinâmica e estrutura da água confinada com as características polares do nanotubo, principalmente para nanotubos com diâmetros menores que 1 nm. Ao variarmos a temperatura do sistema, observamos ainda uma forte dependência da estruturação das moléculas de água com a temperatura, a ponto de apresentar transições entre estados mais e menos ocupados Nossos resultados de dinâmica molecular também mostram que membranas contendo nanoporos com sítios hidrofílicos entre regiões hidrofóbicas podem apresentar grande fluxo de água e reduzido transporte de íons, o que torna esses materiais excelentes candidatos para sistemas de dessalinização e limpeza de metais pesados. Ao acrescentarmos um químico floculante (cloreto de ferro) à água salgada, encontramos resultados ainda melhores para a rejeição de sal pelas membranas nanoporosas. Todos esses resultados demonstram a importância do estudo das propriedades hidrofóbicas e hidrofílicas em interfaces aquosas. Em todos os casos, encontramos uma dependência inerente das propriedades de transporte da água com a característica polar da superfície de contato. / In this work we have proposed an investigation through molecular dynamics (MD) simulations of the water behavior at hydrophobic and hydrophilic surfaces in both functionalyzed nanotubes and two-dimensional nanpores. In the case of water at hydrophobic and hydrophilic nanotube surfaces, we have found a breakdown of the Stokes-Einstein relation for diffusion and viscosity of water confined in narrow hydrophobic nanopores. The mechanism underlying this behavior is dictated by the structure of water under confinement. This result indicates that some of the features observed for water inside hydrophobic carbon nanotubes cannot be observed in other nanopores. We have also found an important dependence of the water dynamics with the polar character of the nanotube, mostly for small diameters. By varying the temperature, both the dynamics and the water structuration are affected, presenting transitions between dense-packed and low-density states. Our results also shows that nanoporous membranes, with hydrophilic sites sandwiched between hydrophobic regions, can present an important flux of water molecules and reduced ion transportation, making these structures promising for desalination processes. By adding a flocculant ingredient (ferric chloride) to the salt water, we found even larger ion rejection rates. All the results point out the importance of studying hydrophilic and hydrophobic interfaces for water transport. In all the cases, we have found an ubiquitous dependence of water dynamic properties on the surface polarity.

Neste trabalho propomos uma investigação através de simulações de dinâmica molecular da água em contato com superfícies hidrofóbicas e hidrofílicas, tanto dentro de nanotubos funcionalizados quanto em membranas bi-dimensionais para dessalinização. No caso da água em contato com superfícies hidrofóbicas e hidrofílicas de nanotubos nós encontramos uma quebra na relação de Stokes-Einstein para a difusão e a viscosidade da água. Essa quebra ocorre para os menores nanotubos − em que pelo menos duas camadas de água formam-se, condição para deslizamento de camadas necessária para o cálculo da viscosidade. O mecanismo por trás deste comportamento é ditado pela estrutura da água confinada. Esse resultado indica que algumas das características observadas para a água dentro de nanotubos hidrofóbicos, como nanotubos de carbono na natureza, são únicas. Encontramos uma grande dependência da dinâmica e estrutura da água confinada com as características polares do nanotubo, principalmente para nanotubos com diâmetros menores que 1 nm. Ao variarmos a temperatura do sistema, observamos ainda uma forte dependência da estruturação das moléculas de água com a temperatura, a ponto de apresentar transições entre estados mais e menos ocupados Nossos resultados de dinâmica molecular também mostram que membranas contendo nanoporos com sítios hidrofílicos entre regiões hidrofóbicas podem apresentar grande fluxo de água e reduzido transporte de íons, o que torna esses materiais excelentes candidatos para sistemas de dessalinização e limpeza de metais pesados. Ao acrescentarmos um químico floculante (cloreto de ferro) à água salgada, encontramos resultados ainda melhores para a rejeição de sal pelas membranas nanoporosas. Todos esses resultados demonstram a importância do estudo das propriedades hidrofóbicas e hidrofílicas em interfaces aquosas. Em todos os casos, encontramos uma dependência inerente das propriedades de transporte da água com a característica polar da superfície de contato. / In this work we have proposed an investigation through molecular dynamics (MD) simulations of the water behavior at hydrophobic and hydrophilic surfaces in both functionalyzed nanotubes and two-dimensional nanpores. In the case of water at hydrophobic and hydrophilic nanotube surfaces, we have found a breakdown of the Stokes-Einstein relation for diffusion and viscosity of water confined in narrow hydrophobic nanopores. The mechanism underlying this behavior is dictated by the structure of water under confinement. This result indicates that some of the features observed for water inside hydrophobic carbon nanotubes cannot be observed in other nanopores. We have also found an important dependence of the water dynamics with the polar character of the nanotube, mostly for small diameters. By varying the temperature, both the dynamics and the water structuration are affected, presenting transitions between dense-packed and low-density states. Our results also shows that nanoporous membranes, with hydrophilic sites sandwiched between hydrophobic regions, can present an important flux of water molecules and reduced ion transportation, making these structures promising for desalination processes. By adding a flocculant ingredient (ferric chloride) to the salt water, we found even larger ion rejection rates. All the results point out the importance of studying hydrophilic and hydrophobic interfaces for water transport. In all the cases, we have found an ubiquitous dependence of water dynamic properties on the surface polarity.