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Cellulose Biosynthesis in OomycetesFugelstad, Johanna January 2008 (has links)
<p>Oomycetes have long been considered as a separate class within the kingdom Fungi, but they are in fact closer to brown algae. They are currently classified in the Stramenopile eukaryotic kingdom, which includes heterokont algae and water molds. The major cell wall polysaccharides in Oomycetes are b-(1à3) and b-(1à6)-glucans, as well as cellulose, which has never been reported in any fungal species. Chitin - the major cell wall polysaccharide in fungi - occurs in minor amounts in the walls of some Oomycetes. Some Oomycete species are pathogens of great economical importance. For example, species of the genus <em>Phytophthora </em>are well studied plant pathogens that cause considerable economical losses in agriculture. Saprolegniosis, a fish disease caused by species from the genus <em>Saprolegnia</em>, is a major problem in the aquaculture industry and represents a threat to populations of salmonids in natural habitats. Currently, there are no chemicals available that are at the same time efficient Oomycete inhibitors, environmentally friendly and safe for human consumption of treated fishes. The biosynthesis of cellulose in Oomycetes is poorly understood, even though this biochemical pathway represents a potential target for new Oomycete inhibitors. In this work, cellulose biosynthesis was investigated in two selected Oomycetes, the plant pathogen <em>Phytophthora infestans</em> and the fish pathogen <em>Saprolegnia monoica</em>.</p><p> </p><p>A new Oomycete <em>CesA</em> gene family was identified. It contains four homologues designated as <em>CesA1, CesA2, CesA3</em> and <em>CesA4</em>. The gene products of <em>CesA1, 2</em> and <em>4 </em>contain Pleckstrin Homology domains located at the N-terminus. This represents a novel feature, unique to the Oomycete <em>CesA </em>genes. <em>CesA3</em> is the dominantly expressed <em>CesA </em>homologue in the mycelium of both <em>S. monoica</em> and <em>P. infestans</em>, while <em>CesA1</em> and<em> CesA2</em> are up-regulated in virulent life stages of <em>P. infestans</em>. <em>CesA4</em> was expressed only in minute amounts in all investigated types of cells. Gene silencing by RNA interference of the whole <em>CesA</em> gene family in <em>P. infestans</em> lead to decreased amounts of cellulose in the cell wall. The inhibitors of cellulose synthesis DCB and Congo Red had an up-regulating effect on <em>SmCesA</em> gene expression, which was accompanied by an increased b-glucan synthase activity <em>in vitro</em>. In addition, these inhibitors slowed down the growth of the mycelium from <em>S. monoica</em>. Zoospores from <em>P. infestans</em> treated with DCB were unable to infect potato leaves and showed aberrant cell wall morphologies similar to those obtained by silencing the <em>CesA</em> gene family.</p><p>Altogether these results show that at least some of the <em>CesA1-4</em> genes are involved in cellulose biosynthesis and that the synthesis of cellulose is crucial for infection of potato by <em>P. infestans</em>.</p><p> </p>
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Phytophthora genties patogenų, pažeidžiančių VDU Kauno botanikos sode augančius juodalksnius (Alnus glutinosa (L.) Gaetrn.), nustatymas ir identifikavimas / Detection and identification of Phytophthora genus pathogens that affect growing alder (Alnus glutinosa (L.) Gaertn.) in VDU Kaunas botanical gardenNavikienė, Ilona 11 June 2014 (has links)
Vieni iš pastaruoju metu sparčiai plintančių augalų patogenų – Phytophthora genties patogenai. Šios genties patogenai pažeidžia vertingus vietinius ir iš svetimų kraštų kilusius augalus, augančius natūraliose augavietėse, miestų želdynuose ir medelynuose. Labai svarbu Phytophthora genties įvairių rūšių patogenų sukeliamas ligas kuo greičiau diagnozuoti, nustatyti šių grybų sąveiką su kitų rūšių patogeniniais organizmais bei pažeidžiamomis augalų rūšimis. Šio darbo tikslas – įvertinti juodalksnių (Alnus glutinosa (L.) Gaetrn.), augančių VDU Kauno botanikos sode, pažeistumą Phytophthora genties organizmais: iš infekuotų audinių išauginti ir morfologiškai apibūdinti grynas patogenų kultūras, identifikuoti patogenus naudojant ekspres testą ALERTTM bei išskirti DNR iš infekuotos medienos, lapų ir dirvožemio. Patogenais infekuoti ėminiai buvo auginami 12-oje Petri lėkštelių su morkų gabalėlių terpe ir 11-oje Petri lėkštelių su salyklo ekstrakto su chloramfenikoliu mitybine terpe. Greituoju testu buvo tikrinami 6 dirvožemio pavyzdžiai. Patogenų DNR buvo išskiriama iš infekuotos medienos, lapų ir dirvožemio. Phytophthora genties kolonijų augimo nepastebėta. Ištyrus dirvožemio ėminius buvo gauti teigiami testų rezultatai. Genominės DNR, išskirtos iš medienos bei lapų, koncentracija svyravo nuo 0,64 iki 22,66 ng/ml, o DNR, išskirtos iš dirvožemio, koncentracija svyravo nuo 5,78 iki 10,2 ng/ml. / Pathogens of Phytophthora genus, are very rapidly spreading plant pathogens, recently. Pathogens of this genus negatively effect valuable local plants and those, which are brought from foreign lands ang grow in natural habitats, urban green plantations and arboretums. It is very important to identify diseases, which are caused by this species or other Phytophthora‘s genus pathogens and to identify interaction of these fungi and other pathogenic organisms species, negatively effected plant species. The aim of the study is to assess the damage done by Phytophthora genus organisms to black alders (Alnus glutinosa), growing in VMU Kaunas botanical garden: to morphologically characterize pure culturs of pathogens and grow them from infected tussues, identify pathogens using Express ALERTTM test and extract DNA from infected wood, leaves and soil. Pathogen-infected samples were grown in 12 Petri dishes with carrot medium and in 11 Petri dishes with malt extract and chloramphenicol medium. High-speed test was used for 6 samples of the soil. Pathogen‘s DNA was extracted from infected wood, leaves and soil.Growth of Phytophthora genus polony was not observed. After the analysis of soil-positive test result was obtained. Concentration of genomic DNA from the wood and leaves was 0,64-22,66 ng/ml from leaves and 5,78-10,2 ng/ml from soil.
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Molecular Detection and Quantification of the Fish Pathogen <i>Saprolegnia</i> spp. Using qPCR and Loop Mediated Isothermal AmplificationGhosh, Satyaki 03 December 2019 (has links)
No description available.
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Molecular characterisation of oomycete diversity in forest soils and tree canopiesJauss, Robin-Tobias 12 November 2021 (has links)
Tree canopies form the most important interface between the earth and the atmosphere, but their role as a potential habitat for eukaryotic microorganisms has been severely understudied. This thesis addresses the hitherto insufficient characterisation of protist diversity and community composition in forest soils and the canopy region, while in particular focusing on the prominent and mostly plant pathogenic Oomycota. Accordingly, several microhabitat compartments were sampled on the ground and in the canopy with the Leipzig Canopy Crane in two seasons over two years, and additionally in a palaeotropical rainforest in Papua New Guinea. Taxon-specific primers were applied to characterise the oomycete diversity in a high-throughput metabarcoding approach. In four chapters, I assess the initial description of oomycete communities in the canopy, their distribution in the forest ecosystem via air dispersal, their seasonality and functional diversity including the quantification of plant pathogens, and their diversity in tropical canopies. These results contribute to a more comprehensive understanding of oomycetes and their pathogenic lineages, their diversity, ecology, distribution, and ecosystem functioning.
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Cellulose Biosynthesis in OomycetesFugelstad, Johanna January 2008 (has links)
Oomycetes have long been considered as a separate class within the kingdom Fungi, but they are in fact closer to brown algae. They are currently classified in the Stramenopile eukaryotic kingdom, which includes heterokont algae and water molds. The major cell wall polysaccharides in Oomycetes are b-(1à3) and b-(1à6)-glucans, as well as cellulose, which has never been reported in any fungal species. Chitin - the major cell wall polysaccharide in fungi - occurs in minor amounts in the walls of some Oomycetes. Some Oomycete species are pathogens of great economical importance. For example, species of the genus Phytophthora are well studied plant pathogens that cause considerable economical losses in agriculture. Saprolegniosis, a fish disease caused by species from the genus Saprolegnia, is a major problem in the aquaculture industry and represents a threat to populations of salmonids in natural habitats. Currently, there are no chemicals available that are at the same time efficient Oomycete inhibitors, environmentally friendly and safe for human consumption of treated fishes. The biosynthesis of cellulose in Oomycetes is poorly understood, even though this biochemical pathway represents a potential target for new Oomycete inhibitors. In this work, cellulose biosynthesis was investigated in two selected Oomycetes, the plant pathogen Phytophthora infestans and the fish pathogen Saprolegnia monoica. A new Oomycete CesA gene family was identified. It contains four homologues designated as CesA1, CesA2, CesA3 and CesA4. The gene products of CesA1, 2 and 4 contain Pleckstrin Homology domains located at the N-terminus. This represents a novel feature, unique to the Oomycete CesA genes. CesA3 is the dominantly expressed CesA homologue in the mycelium of both S. monoica and P. infestans, while CesA1 and CesA2 are up-regulated in virulent life stages of P. infestans. CesA4 was expressed only in minute amounts in all investigated types of cells. Gene silencing by RNA interference of the whole CesA gene family in P. infestans lead to decreased amounts of cellulose in the cell wall. The inhibitors of cellulose synthesis DCB and Congo Red had an up-regulating effect on SmCesA gene expression, which was accompanied by an increased b-glucan synthase activity in vitro. In addition, these inhibitors slowed down the growth of the mycelium from S. monoica. Zoospores from P. infestans treated with DCB were unable to infect potato leaves and showed aberrant cell wall morphologies similar to those obtained by silencing the CesA gene family. Altogether these results show that at least some of the CesA1-4 genes are involved in cellulose biosynthesis and that the synthesis of cellulose is crucial for infection of potato by P. infestans. / QC 20101110
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A Parasite’s Paradise: Biotrophic Species Prevail Oomycete Community Composition in Tree CanopiesJauss, Robin-Tobias, Walden, Susanne, Fiore-Donno, Anna Maria, Schaffer, Stefan, Wolf, Ronny, Feng, Kai, Bonkowski, Michael, Schlegel, Martin 11 December 2023 (has links)
Oomycetes (Stramenopiles, protists) are among the most severe plant pathogens,
comprising species with a high economic and ecologic impact on forest ecosystems.
Their diversity and community structures are well studied in terrestrial habitats, but
tree canopies as huge and diverse habitats have been widely neglected. A recent
study highlighted distinct oomycete communities in the canopy stratum compared to
the ground region of three temperate deciduous trees (Quercus robur, Tilia cordata,
Fraxinus excelsior). While the communities from the two strata were distinct when
taking oomycete abundances into account, they were rather similar when only OTU
presence/absence was considered. It remains, however, unknown if this homogeneity
in the OTU presence also leads to a functional homogenisation among microhabitats
within the two strata ground and canopy. In this study, we supplemented functional
traits to oomycete communities in the tree microhabitats, which were determined
over a time period of 2 years with a metabarcoding approach. Our results showed
that even though most oomycetes occurred in all microhabitats, a strong discrepancy
between the strata and correspondingly the distribution of oomycete lifestyles could
be observed. This pattern was constant over several seasons. Obligate biotrophic
species, exclusively feeding on living host tissue, dominated the canopy region,
implying tree canopies to be a hitherto neglected reservoir for parasitic protists. OTUs
assigned to the genus Hyaloperonospora—parasites highly specialised on hosts that
were not sampled—could be determined in high abundances in the canopy and the
surrounding air, challenging the strict host dependencies ruled for some oomycetes.
Our findings further contribute to the understanding of oomycete ecosystem functioning
in forest ecosystems
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Functional characterization of cellulose and chitin synthase genes in Oomycetes / Funktionell karaktärisering av cellulosa- och kitinsyntasgener i oomyceterFugelstad, Johanna January 2011 (has links)
Some species of Oomycetes are well studied pathogens that cause considerable economical losses in the agriculture and aquaculture industries. Currently, there are no chemicals available that are environmentally friendly and at the same time efficient Oomycete inhibitors. The cell wall of Oomycetes consists of b-(1à3) and b-(1à6)-glucans, cellulose and in some species minute amounts of chitin. The biosynthesis of cellulose and chitin in Oomycetes is poorly understood. However, cell wall synthesis represents a potential target for new Oomycete inhibitors. In this work, cellulose and chitin synthase genes and gene products were analyzed in the plant pathogen Phytophthora infestans and in the fish pathogen Saprolegnia monoica. A new Oomycete CesA gene family was identified, containing four subclasses of genes designated as CesA1 to 4. The gene products of CesA1, 2 and 4 contain pleckstrin homology (PH) domains located at the N-terminus, which is unique to the Oomycete CesAs. Our results show that the SmCesA2 PH domain binds to phosphoinositides, F-actin and microtubules in vitro and can co-localize with F-actin in vivo. Functional characterization of the CesA genes by gene silencing in P. infestans led to decreased cellulose content in the cell wall. The cellulose synthase inhibitors DCB and Congo Red inhibited the growth of the mycelium of S. monoica and had an up-regulating effect on SmCesA gene expression. Zoospores from P. infestans treated with DCB were unable to infect potato leaves. In addition, two full-length chitin synthase genes (Chs) were analyzed from S. monoica. Expression of SmChs2 in yeast yielded an active recombinant protein. The biochemical characterization of the in vitro product of SmChs2 confirmed that the protein is responsible for chitin formation. The chitin synthase inhibitor nikkomycin Z inhibited the SmChs2 both in vivo and in vitro. Altogether these results show that at least some of the CesA1-4 genes are involved in cellulose biosynthesis and that synthesis of cellulose is crucial for infection of potato by P. infestans. The PH domain is involved in the interaction of CesA with the cytoskeleton. In addition, we firmly demonstrate that the SmChs2 gene encodes a catalytically active chitin synthase. / QC 20110531
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Study of Diseases Caused by Diaporthe Amygdali and Oomycetes on Almond CropsBeluzán Flores, Francisco Javier 19 April 2025 (has links)
Tesis por compendio / [ES] Se desarrolló un ensayo qPCR para la detección y cuantificación de inóculo aéreo de D. amygdali, incluyendo el diseño de un par de cebadores específicos para esta especie. Esta metodología se utilizó para estudiar la dinámica del inóculo de D. amygdali en trampas de esporas colocadas en dos huertos de almendros de diferentes ubicaciones, en dos temporadas de crecimiento. Con los datos climáticos registrados se construyó un modelo Hurdle de dos partes; la primera parte relacionó la presencia o ausencia de ADN de D. amygdali (Bernoulli o cualitativa) y la otra consideró la concentración promedio de ADN del hongo (Gamma o cuantitativa). El efecto de la temperatura estuvo relacionado con la amplitud térmica diaria; los rangos térmicos más amplios redujeron la concentración de ADN, mientras que los rangos térmicos más estrechos aumentaron la detección de ADN. Los días con un promedio de humedad relativa superior al 80% tuvieron un efecto negativo en la concentración de ADN de D. amygdali. Las precipitaciones tuvieron una influencia positiva en ambas partes del modelo, confirmando la contribución de la lluvia en la dispersión del inóculo. Finalmente, la variable velocidad del viento influyó positivamente en ambas partes del modelo, en ambas temporadas de crecimiento.
En ensayos de laboratorio, se inocularon ramitas de 25 cultivares de almendro con cuatro aislados de D. amygdali, mientras que las inoculaciones de campo implicaron la inoculación de brotes en crecimiento de cultivares de almendro injertados en el portainjerto 'GF-677', durante cuatro años. En ambos tipos de experimentos, el inóculo consistió en discos de agar con micelio, que se insertaron debajo de la corteza y se midió la longitud de las lesiones causadas por el hongo. Todos los cultivares evaluados mostraron lesiones necróticas en respuesta a D. amygdali, confirmando su susceptibilidad. El análisis de conglomerados clasificó los cultivares como susceptibles o muy susceptibles. Las características agronómicas, como el tiempo de floración y maduración, se vincularon con la susceptibilidad de los cultivares. Los cultivares de floración tardía, muy tardía y de maduración temprana a media, mostraron una alta susceptibilidad.
Se realizaron prospecciones entre 2018 y 2020 en seis provincias españolas, para recolectar e identificar oomicetos asociados con síntomas de pudrición de raíz y cuello en almendros. Se obtuvieron un total de 104 aislados de oomicetos procedentes de árboles enfermos, y la secuenciación de la región espaciadora transcrita interna (ITS) identificó especies de diferentes géneros. Phytopythium vexans y Ph. niederhauserii fueron las especies más frecuentes. Las pruebas de patogenicidad en plantas de almendro de un año de edad injertadas en el portainjerto 'Garnem' mostraron síntomas graves, como defoliación, marchitez y muerte regresiva, y algunas plantas murieron cuando se inocularon con Pp. vexans y Ph. niederhauserii. Algunos aislados de Ph. niederhauserii redujeron significativamente el peso seco de las raíces en comparación con el control, pero este efecto no se observó en plantas inoculadas con Pp. vexans.
Se evaluó la patogenicidad de 12 especies de oomicetos presentes en el suelo en tres portainjertos híbridos de Prunus utilizados frecuentemente en la cuenca mediterránea. Se realizaron pruebas de patogenicidad con 15 aislados de oomicetos en plantas de portainjertos de 1 año de edad. Noventa días después de la inoculación se evaluaron los síntomas de la enfermedad con una escala de severidad y se calculó el AUDPC y la probabilidad de supervivencia de las plantas inoculadas. Todos los aislados fueron patógenos para las plántulas de los portainjertos y se volvieron a aislar de las lesiones de las raíces. Para cada portainjerto se detectaron grandes diferencias en virulencia entre las diferentes especies de oomicetos y aislados de Ph. niederhauserii. Phytophthora multivora y Pp. helicoides fueron generalmente los más virulentos. / [CA] Es va desenvolupar un assaig qPCR per a la detecció i quantificació d'inòcul aeri de D. amygdali, inclòs el disseny d'un parell d'encebadors específics per a aquesta espècie. Aquesta metodologia es va utilitzar per estudiar la dinàmica de l'inòcul de D. amygdali en trampes d'espores col·locades en dos horts d'ametllers de diferents indrets en dues temporades de creixement. Es va construir un model Hurdle de dues parts amb les dades climàtiques registrades; la primera part relacionava la presència o absència d'ADN de D. amygdali (Bernoulli o qualitatiu) i l'altra considerava la concentració mitjana d'ADN del fong (Gamma o quantitativa). L'efecte de la temperatura estava relacionat amb l'amplitud tèrmica diària; rangs tèrmics més amplis van reduir la concentració d'ADN, mentre que rangs tèrmics més estrets van augmentar la detecció d'ADN. Els dies amb una mitjana d'humitat relativa superior al 80% van tenir un efecte negatiu en la concentració d'ADN de D. amygdali. Les precipitacions van tenir una influència positiva en ambdues parts del model, confirmant la contribució de la pluja en la dispersió de l'inòcul. Finalment, la variable de velocitat del vent va influir positivament en ambdues parts del model, en ambdues temporades de creixement.
En proves de laboratori, es van inocular branquetes de 25 cultivars d'ametller amb quatre aïllats de D. amygdali, mentre que les inoculacions de camp van implicar la inoculació de brots en creixement de cultivars d'ametller empeltats al portaempelt 'GF-677' durant quatre anys. En ambdós tipus d'experiments, l'inòcul consistia en discs d'agar amb miceli, que s'introduïen sota l'escorça i es mesuraven les longituds de les lesions provocades pel fong. Tots els cultivars avaluats van mostrar lesions necròtiques en resposta a D. amygdali, confirmant la seva susceptibilitat. L'anàlisi de conglomerats va categoritzar els cultivars com a susceptibles o molt susceptibles. Els trets agronòmics, com ara els temps de floració i maduració, estaven relacionats amb la susceptibilitat del conreu. Els cultivars de floració tardana, molt tardana i de maduració precoç a mitjana van mostrar una alta susceptibilitat.
Entre el 2018 i el 2020 s'han realitzat prospeccions a 6 províncies d'Espanya per recollir i identificar oomicets associats a símptomes de podridura de l'arrel i del coll d'ametllers. Es van obtenir un total de 104 aïllats d'oomicets d'arbres malalts i la seqüenciació de la regió de l'espaiador transcrit intern (ITS) va identificar espècies de diferents gèneres. Phytopythium vexans i Ph. niederhauserii eren les espècies més comunes. Les proves de patogenicitat en plàntules d'ametller d'un any empeltades en el portaempelts 'Garnem' van revelar símptomes greus, com ara defoliació, marciment i mort, amb algunes plantes que van morir quan es van inocular amb Pp. vexans i Ph. niederhauserii. Alguns aïllats de Ph. niederhauserii van reduir significativament el pes sec de les arrels en comparació amb el control, però aquest efecte no es va observar en les plàntules inoculades amb Pp. vexans.
Es va avaluar la patogenicitat de 12 espècies d'oomicets del sòl en tres portaempelts híbrids de Prunus d'ús habitual a la conca mediterrània. Es van realitzar proves de patogenicitat amb 15 aïllats d'oomicets en plàntules de portaempelt d'un any. Noranta dies després de la inoculació, es van avaluar els símptomes de la malaltia en una escala de gravetat i es va calcular AUDPC i la probabilitat de supervivència de les plàntules inoculades. Tots els aïllats van ser patògens per a les plàntules de portaempelt i es van tornar a aïllar de les lesions de les arrels. Per a cada portaempelt es van detectar grans diferències de virulència entre les diferents espècies d'oomicets i aïllats de Ph. niederhauserii. Phytophthora multivora i Pp. helicoides eren en general els més virulents. / [EN] A qPCR assay for the detection and quantification of aerial inoculum of D. amygdali, including the design of a pair of specific primers for this species, was developed. This methodology was used to study the dynamics of D. amygdali inoculum in spore traps placed at two almond orchards from different locations in two growing seasons. A two-part Hurdle model was built with the recorded climatic data; the first part related the presence or absence of D. amygdali DNA (Bernoulli or qualitative) and the other considered the average concentration of DNA of the fungus (Gamma or quantitative). The temperature effect was related to daily thermal amplitude; wider thermal ranges reduced DNA concentration, while narrower thermal ranges increased DNA detection. The days with average relative humidity higher than 80% had a negative effect on the concentration of D. amygdali DNA. Rainfall had a positive influence on both parts of the model, confirming the contribution of precipitation in the dispersal of inoculum. Finally, wind speed variable positively influenced both parts of the model, in both growing seasons.
In laboratory tests, twigs from 25 almond cultivars were inoculated with four isolates of D. amygdali, while field inoculations involved the inoculation of growing shoots of almond cultivars grafted onto 'GF-677' rootstock over four years. In both type of experiments, inoculum consisted of agar plugs with mycelium, which were inserted underneath the bark and the lesion lengths caused by the fungus were measured. All evaluated cultivars showed necrotic lesions in response to D. amygdali, confirming their susceptibility. Cluster analysis categorized cultivars as susceptible or very susceptible. Agronomic traits, such as blooming and ripening times, were linked to cultivar susceptibility. Late blooming, very late blooming, and early to medium ripening cultivars exhibited high susceptibility.
Surveys were carried out between 2018 and 2020 in 6 provinces of Spain to collect and identify oomycetes associated with root and crown rot symptoms on almond trees. A total of 104 oomycete isolates were obtained from diseased trees, and sequencing of the internal transcribed spacer (ITS) region identified species from different genera. Phytopythium vexans and Ph. niederhauserii were the most common species. Pathogenicity tests on one-year-old almond seedlings of 'Garnem' rootstock revealed severe symptoms, including defoliation, wilting, and dieback, with some plants dying when inoculated with Pp. vexans and Ph. niederhauserii. Some isolates of Ph. niederhauserii significantly reduced the dry weight of the roots compared with the control, but this effect was not observed in seedlings inoculated with Pp. vexans.
Pathogenicity of 12 soil-borne oomycete species on three commonly used Prunus hybrid rootstocks in the Mediterranean Basin was evaluated. Pathogenicity tests with 15 oomycete isolates were conducted on 1-year-old rootstock seedlings. Ninety days after inoculation, disease symptoms were evaluated on a severity scale, and the AUDPC and the survival probability of the inoculated seedlings were calculated. All the isolates were pathogenic to the rootstock seedlings and were re-isolated from root lesions. For each rootstock large differences in virulence were detected among the different oomycete species and isolates of Ph. niederhauserii. Phytophthora multivora and Pp. helicoides were generally the most virulent. / Francisco Beluzán was supported by Agencia Nacional de Investigación
y Desarrollo/Subdirección de Capital Humano/Doctorado Becas Chile en el
Extranjero/72200145. / Beluzán Flores, FJ. (2024). Study of Diseases Caused by Diaporthe Amygdali and Oomycetes on Almond Crops [Tesis doctoral]. Universitat Politècnica de València. https://doi.org/10.4995/Thesis/10251/204445 / Compendio
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Atividade da própolis verde contra o fitopatógeno Pythium aphanidermatum e análise da interação do composto majoritário Artepillin C com sistemas biomiméticos de membranas / Activity of green propolis against the phytopathogen Pythium aphanidermatum and analysis of the interaction of the majority compound Artepillin C with membrane biomimetic systemsPazin, Wallance Moreira 21 March 2016 (has links)
O aumento da resistência microbiana devido a fatores como uso excessivo e ineficiente de antibióticos convencionais acarreta a necessidade da busca por novos compostos bioativos que atuem por mecanismos de ação diferentes aos fármacos já conhecidos. Na agricultura, o uso intensivo de pesticidas para o combate de microrganismos que comprometem principalmente a parte alimentícia também traz diversos problemas relacionados à resistência antimicrobiana e a riscos ambientais, oriundos do acúmulo dessas substâncias no solo. Dentro deste aspecto, o pseudofungo Pythium aphanidermatum, da classe dos oomicetos, destaca-se por ser uma espécie agressiva e altamente resistente a fungicidas comuns, apodrecendo raízes e frutos de cultivos de tomate, beterraba, pepino, pimentão, etc. A própolis verde, constituída em sua grande parte por material resinoso coletado e processado pela abelha da espécie Apis mellifera tem sido utilizada na medicina tradicional devido ao seu amplo espectro de ações preventivas e tratamentos de doenças, possuindo propriedades anti-inflamatórias, antimicrobianas, anticancerígenas e antioxidantes, tornando-se um produto de grande interesse na busca de novos compostos bioativos. Dentro destes aspectos apresentados, neste trabalho investigamos a ação da própolis verde contra o fitopatógeno P. aphanidermatum e identificamos através da técnica de cromatografia e bioensaios que a Artepillin C (3,5-diprenil-4-ácido-hidroxicinâmico), majoritária na própolis verde, foi o principal composto nesta ação. Os efeitos terapêuticos desta molécula tem sido foco de muitos estudos, porém ainda não há evidência em sua interação com agregados anfifílicos que mimetizam membranas celulares. O caráter anfifílico do composto, elevado pela presença dos grupos prenilados ligados ao ácido cinâmico, favoreceram a sua inserção nas membranas modelo, principalmente em seu estado agregado. Estas conclusões puderam ser inferidas devido às alterações nas propriedades das bicamadas lipídicas na presença da Artepillin C, podendo causar, especificamente para o caso de fitopatógenos como o P. aphanidermatum, perdas funcionais das proteínas de membranas, liberação de eletrólitos intracelulares e desintegração citoplasmática dos micélios e esporos. Ainda, as diferentes composições lipídicas nas vesículas influenciam no modo de interação do composto e consequentes alterações em suas estruturas, principalmente na presença do colesterol, que auxilia na manutenção da permeabilidade da bicamada lipídica, que pode contribuir para a integridade do conteúdo citoplasmático da célula. / The increase in the microbial resistance due to the excessive and inefficient use of conventional antibiotics brings the necessity to search new bioactive compounds which play their mechanism of action differently from the known drugs. In the agriculture, the intensive use of pesticide for the combat of microorganisms which undermine mainly the food portion also brings several issues related to the antimicrobial resistance and environment risks, originated from the high amount of these substances on the soil. In this aspect, the fungus-like Pythium aphanidermatum microorganism, from class Oomycete, stands out for being an aggressive species and highly resistant to common fungicides, rotting roots and fruits of tomato, beet, cucumber, pepper, etc. Green propolis, constituted by resinous material collected and processed by bees of the species Apis mellifera, has been used in the traditional medicine due its wide spectrum of preventive actions and diseases treatments, promoting anti-inflammatory, antimicrobial, anticancer and antioxidant properties, becoming a product of interest for investigation in the research of new bioactive compounds. Under all the aspects showed so far, in this work we investigated the action of the green propolis against the phytopathogen P. aphanidermatum and identified through chromatography and bioassays that Artepillin C (3,5-diprenyl-4-hydroxycinnamic acid), majority in the green propolis, was the main compound in this action. The therapeutic effects of this molecule have been the focus of several studies, but, so far there is no evidence for its interaction with amphiphilic aggregates that mimic cell membranes. The amphiphilic character of the compound, enhanced by the presence of two prenylated groups bounded to the cinnamic acid, favors the insertion of the compound in the model membranes mainly in its aggregation state. These conclusions could be inferred due the alterations in the properties of the lipid bilayer in the presence of Artepillin C, that may cause, specifically in the case of phytopathogens like P. aphanidermatum, functional losses of membrane proteins, releasing of intracellular electrolytes and cytoplasmatic disintegration of mycelium and spores. Moreover, the difference of the lipid composition in the vesicles influence in the action of the compound and consequent alteration in their structures, mainly in the presence of cholesterol, that provides the maintenance of permeability of the lipid bilayer, contributing to the integrity of the cytoplasmic material of the cell.
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Esporulação e controle alternativo de doenças causadas por Phytophthora nicotianae em tomate e berinjelaPIMENTA NETO, Antônio Alves 29 February 2012 (has links)
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Previous issue date: 2012-02-29 / Conselho Nacional de Pesquisa e Desenvolvimento Científico e Tecnológico - CNPq / This study aimed to evaluate the effectiveness of extracts and vegetable oils in controlling diseases of Solanaceae caused by Phytophthora nicotianae and its effects on the isolates of the pathogen. The effect of means and methods of cultivation in the sporulation of the pathogen was first studied to enable the inoculations and tests with oils and plant extracts. The first study was to evaluate the influence of various liquid and solid culture media, obtained from plant host tissues and/or indicated in the literature for the cultivation of Phytophthora spp, as well as different light regimes: constant dark (D), 12h alternating light (LD), and constant light (L) and the hydrogen potential in growth and sporulation of P. nicotianae. The mycelial growth was obtained at 10 and 15 days of culture, through the quantification of biomass. The development of the colonies in the agar media was monitored through daily measurement of radial growth. The spore (zoospores/mL) was obtained in different ways in the 10th and 15th day in a Neubauer chamber, and the data transformed to √ x +1. In the agar media, (D) showed the largest growth increases, however means differed in all light regimes, especially those of cassava, eggplant, tomato and vegetable juice (V8), the first two with the largest increases and the last two with the lowest. The light regimes did not significantly affect growth in liquid media with 10 days of incubation. In some ways the presence of light is inversely proportional to the vegetative growth, but was an essential factor for sporulation, since it showed the presence of zoospores only (L) and (LD), except for the V8 medium, where it obtained the highest sporulation in the absence of light (D). Strains, media, and the presence of agar, promoted statistical difference in the number of zoospores/mL in (L) and (LD). More acids culture media induced more sporulation of P. nicotianae and less mycelial growth. The second study was divided in "in vitro" and "in vivo” bioassays aiming to analyse the antifungal and biocontrole effect of vegetable oils and extracts of Syzygium aromaticum and Cymbopogon nardus on fruit and tomato and eggplant seedlings inoculated with P. nicotianae. It was found that the products inhibited the germination of the mycelial growth and zoospores obtained from S. aromaticum at 0,5 μL/ ml and 10% concentrations CAE and EO, respectively. Treatments with C. nardus EO and CAE at 1,0 μL/ ml and 20% respectively, delayed progression of disease in fruit and seedlings compared to inoculated control. It can be inferred that the products obtained from S. aromaticum and C. nardus, have the potential to reduce the attack of this pathogen on tomato and eggplant. / O presente trabalho teve como objetivo avaliar a eficiência de extratos e óleos vegetais no controle de doenças causadas por Phytophthora nicotianae em tomateiro e berinjela, bem como seus efeitos sobre os isolados do patógeno. A esporulação do patógeno foi inicialmente estudado para viabilizar as inoculações e os testes com os óleos e extratos vegetais. O primeiro estudo consistiu em avaliar a influência de diferentes meios de cultura líquidos e agarisados, obtidos de órgão vegetais de hospedeiros e/ou indicados na literatura para o cultivo de Phytophthora spp; além de diferentes regimes de luminosidade: ausência de luz (E), alternância luminosa de 12h (LE), e luz constante (L); e potencial hidrogeniônico no crescimento e esporulação de P. nicotianae. Nos meios agarisados, (E) proporcionou os maiores crescimentos, entretanto em todos os regimes de luz os meios se diferenciaram, destacando-se dos demais os de mandioca, berinjela, tomate, e suco de vegetais (V8), os dois primeiros com os maiores crescimentos e os dois últimos com os menores. Os regimes de luz não influenciaram significativamente o crescimento nos meios líquidos com 10 dias de incubação. Em alguns meios a presença de luz foi inversamente proporcional ao crescimento vegetativo, mas foi um fator essencial para a esporulação, pois se verificou a presença de zoósporos somente em (L) e (LE), a exceção do meio V8, no qual se obteve a mais alta esporulação na ausência de luz (E). Em (L) e (LE), os isolados, meios e a presença ou não de ágar, promoveram diferenças estatísticas quanto ao número de zoósporos/mL. Verificou-se que meios mais ácidos proporcionam um menor crescimento, mas uma maior esporulação para P. nicotianae. O segundo estudo foi dividido em bioensaios “in vitro” e “in vivo”, analisado o efeito fungitóxico e biocontrolador de óleos e extratos vegetais de Syzygium aromaticum e Cymbopogon nardus em frutos e plântulas de tomateiro e berinjela inoculados com P. nicotianae. Constatou-se que os produtos que mais inibiram o crescimento micelial e a germinação dos zoósporos, foram obtidos de S. aromaticum, a partir das concentrações de 0,5 μL/mL e 10% do OE e EBA, respectivamente. Enquanto que o tratamento que mais retardou a evolução da doença em frutos e plântulas quando comparado com a testemunha inoculada, foi o OE e EBA de C. nardus nas concentrações de 1,0 μL/mL e 20%, respectivamente. Com isso podemos inferir que os produtos obtidos de S. aromaticum e C. nardus, têm potencial para reduzir o ataque deste patógeno em plantas de tomate e berinjela.
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