I investigated the effects ofhabitat loss and subsequent restoration on invertebrate community structure and ecosystem functioning in a mined peat bog in the North Island, New Zealand. In an experimental trial, the impact of peat bog habitat loss and isolation on the invertebrate community associated with Sporadanthus ferrugineus (Restionaceae) was investigated. Potted S. ferrugineus plants were exposed to invertebrates at various distances up to 800 m from an intact habitat (the presumed source population) over 18 weeks. Invertebrates rapidly colonised the experimental plants, with all major Orders and trophic groups present on Sc ferrugineus within 6 weeks. However. with increasing distance away from the undisturbed habitat, there was a significant decrease in total richness and abundance of invertebrates associated with the potted plants. Additional tests showed that even a moderate degree of isolation (i.e. greater than 400 m) from the intact habitat caused an almost complete failure of 'Batrachedra' sp. to colonise its host plant, at least in the short-term, The density of eggs and larvae, and the average larval size of 'Batrachedra' sp. (Lepidoptera: Coleophoridae) colonising Si ferrugineus plants, as well as the proportion of Si ferrugineus stems damaged by 'Batrachedra' sp. herbivory, all decreased logarithmically with increasing distance from the intact habitat. Surprisingly, though, the rate of recovery of the insect-plant interaction following experimental habitat restoration was remarkably rapid (i.e. between 3Y2 and 6 years). After just 6 years there was no significant difference in insect-plant interactions between the intact peat bog sites and any of the experimentally restored sites up to 800 m away. These results suggest that the degree of isolation from undisturbed habitat has a major impact on the rate and patterns of restoration recovery in the invertebrate community and that some insect-plant interactions can recover rapidly from habitat loss with restoration management. Restoration of mined peat bogs in northern New Zealand is initiated by establishing a native vegetation cover to minimize further peat degradation. The effects of various restoration techniques on litter decomposition, microbial community activity and beetle community composition were investigated within an experimental trial, These treatments included translocation ofpeat bog habitat (direct transfer of islands), milled peat islands with no seed and milled peat islands with seed, and were compared with an unrestored mined site and an undisturbed peat bog. In all the response variables measured, the undisturbed peat bog sites had significantly higher decomposition rates and microbial respiration rates, and significantly higher abundance and species richness of beetles than any of the restoration treatments. Inaddition, the technique used to restore mined peatlands had a significant effect on the beetle community composition and litter decomposition processes. Despite a rapid initial change in the beetle community following habitat translocation, the direct transfer islands were still the most similar in beetle species composition to the undisturbed peat bog. Microbial activity and decomposition rates were higher in the direct transfer and mined peat surface after 6 months. However, even after 12 months, decomposition rates in the restored habitats were still far from reaching the levels recorded in the undisturbed peat bog. The results suggest that beetle community structure and ecosystem processes such as decomposition and microbial activity rates may be able to recover faster with certain restoration techniques, such as direct transfer of intact habitat islands. Subsequently, I examined long-term beetle community reassembly on islands that had been restored by creating raised areas ofprocessed peat with the addition of Leptospermum scoparium seed. Monitoring of different-aged restored islands representing the full range of restoration ages (up to 6 years) available at the peat mine, indicated that as the peat islands became older and the vegetation structure became more complex, the abundance, species richness and composition of the beetle community became increasingly similar to the community in the undisturbed peat bog. Despite this, distinct differences between the intact peat bog and older restored peat islands still persisted, even after 6 years, particularly at an individual species level. However, it is predicted that within 12 years the restored peat islands will share 100% ofbeetle species in common with the undisturbed peat bog. Taken together, these results indicate that restoration is effective in initiating the recovery of beetle assemblages and ecosystem processes (such as litter decomposition and microbial community activity) in cut-over peat bogs. However, it is estimated to take at least 12 years before pre-mining communities and functions are attained, and ongoing monitoring to develop an understanding of the longer-term dynamics of such ecosystems and processes is clearly required.

La partie nord du Système du courant de Humboldt (NSCH) couvre moins de 0.1% de la surface océanique mondiale mais produit plus de poisons, en particulier d'anchois du Pérou (Engraulis ringens), par unité de surface que n'importe quelle autre région du monde. Bien que ce système produise suffisamment de macrozooplancton pour alimenter les populations de poisson fourrage, le manque d'informations sur ce compartiment limite nos capacités d'étude. L'objectif de cette thèse est d'étudier la dynamique de la distribution spatiotemporelle de la biomasse en macrozooplancton du NSCH en relation avec l'environnement physique et les poissons fourrage, à différentes échelles. Pour ce faire une méthode acoustique bi-fréquences a été développée et appliqué à des séries de données acoustiques historiques. Des informations à haute résolution ont ainsi pu être extraite sur la biomasse et les patrons de distribution du macrozooplancton, de la galathée pélagique 'munida', des poissons et des autres compartiments. Cette méthode nous a également permis d'estimer l'extension verticale de la communauté épipélagique (ZVEEC). Nous avons démontré que ZVEEC coïncide avec la limite supérieure de la zone de minimum d'oxygène (ZMO), ce qui permet de produire des donnés spatialisées à haute résolution de la limite supérieure de la ZMO et d'estimer le volume d'habitat de l'anchois. Notre estimation de biomasse en macrozooplancton, environ quatre fois supérieures aux estimations antérieures, est en accord avec les découvertes récentes sur l'écologie trophique des poissons fourrage du NSCH et fournit des éléments étayant les théories actuelles sur l'origine de la haute productivité en poissons du NSCH. L'étude des impacts des structures physiques de submeso- et mesoéchelle sur la distribution du macrozooplancton supporte l'hypothèse d'une structuration de type 'bottom-up'. Nous avons également mis en évidence l'impact de la structuration spatiale du macrozooplancton sur la distribution des poissons fourrage. Les données physiques et biologiques à haute résolution obtenues grâce à cette étude ouvrent de nouvelles perspectives pour réaliser des études écologiques intégrées à échelles multiples et pour calibrer les modèles biogéochimiques, trophiques ou End-to-End. / The Northern Humboldt Current system (NHCS) represents less than 0.1% of the world ocean surface but produces more fish, mainly Peruvian anchovy (Engraulis ringens), per unit area than any other region in the world. Although this system produces enough macrozooplankton to feed its high production of forage fish, the paucity of information on zooplankton hampers research in the system. The objective of this study was to investigate the multiscale dynamics of the spatiotemporal distribution of the macrozooplankton biomass off Peru in relation to the physical environment and their fish predators. For that a bi-frequency acoustic method was developed and applied to extract, from historical acoustic data, high-resolution information on the biomass and the patterns of distribution of macrozooplankton, the pelagic red squad 'munida', fish and other marine compartments. This method also allows estimating the vertical extension of this epipelagic community (ZVEEC). We demonstrated that ZVEEC coincide with the upper limit of the oxygen minimum zone (OMZ), which allowed both producing high-resolution spatial data of the upper limit of the OMZ and estimating the volume habitat of anchovy. The estimated macrozooplankton biomass was about four times higher than previously reported. This estimate is in agreement with the recent findings on forage fish trophic ecology and supports the current hypotheses explaining the NHCS high fish production. The study of the impacts of the submeso- and mesoscale physical structures on macrozooplankton provided evidence of the bottom-up physical effect on the distribution of macrozooplankton biomass. We also found further evidence of the structuring bottom-up effect that macrozooplankton exert on forage fish. The high-resolution biological and physical data obtained in this study opens new perspective to perform integrated multiscale ecological studies and to calibrate biogeochemical, trophic and End-to-End models.

Les écosystèmes sub-Antarctiques sont particulièrement vulnérables aux perturbations environnementales et notamment aux invasions biologiques. L'introduction du Chat (Felis silvestris catus) sur la Grande Terre de l'archipel des Kerguelen a eu des effets désastreux sur les communautés d'oiseaux marins. Ce prédateur doit sa survie dans cet environnement à la présence d'une proie introduite, le Lapin (Oryctolagus cuniculus), qui constitue sa ressource principale pendant l'hiver lorsque les oiseaux marins sont repartis en mer. L'éradication du chat n'apparaît pas être une solution réaliste compte tenu de la taille de l'île (6675 km2) et son inaccessibilité. De plus elle serait susceptible de conduire à des résultats non souhaités comme par exemple une explosion démographique des populations de lapins. La mise en place d'une politique de gestion adaptée nécessite d'améliorer notre connaissance des facteurs qui conditionnent la dynamique spatio-temporelle des populations de chats. Au cours de cette thèse, j'ai cherché à identi_er les mécanismes des interactions entre le chat, le lapin et la végétation, car elles sont attendues conditionner celles existantes entre le chat et les oiseaux marins. J'ai analysé la dynamique spatio-temporelle de quatre populations de chats sur la Grande Terre et j'ai en particulier recherché si des conditions environnementales spatialement corrélées (effet Moran) pouvaient, en se propageant dans la chaine alimentaire, synchroniser les variations temporelles d'abondance des populations de chats. Enfin, j'ai étudié l'impact des variations spatio-temporelles d'abondance des populations de chats sur les variations spatio-temporelles de la structure génétique des populations de chats. / Sub-Antarctic ecosystems are particularly vulnerable to environmental perturbations including biological invasions. The introduction of the feral cat (Felis silvestris catus) on the Grande TerreIsland of the Kerguelen archipelago has lead to detrimental effects on seabird's communities. Cat survival in this environment is possible because of the presence of the introduced rabbit (Oryctolagus cuniculus), which constitute the main prey of the cat during winter when most seabirds are offshore. Cat eradication is not a realistic solution given the size and inaccessibility of the island (6675 km2). Moreover it can lead to unwanted results such as the demographic explosion of rabbit populations. The design of appropriate management policy needs to improve our understanding of the factors that influence the spatio-temporal dynamics of cat populations. In this thesis, I explored the mechanisms of cat-rabbit-vegetation interactions, as they are expected to determine interactions existing between cats and seabirds. I analyzed the spatio-temporal dynamics of four cat populations on Grande Terre Island and I especially sought whether environmental conditions spatially correlated (Moran effect) could synchronize cat through their effect on the trophic web pathways. Finally, I studied the impact of spatio-temporal

No description available.

Les rongeurs commensaux sont responsables de grands dommages en agriculture et dans les zones urbaines. En tant qu’espèces invasives, elles peuvent mettre en danger les espèces locales et sont porteurs et vecteurs de plusieurs zoonoses importantes. Les méthodes de contrôle sont basées principalement sur l’utilisation des warfarines, lesquelles produisent un grand nombre d’intoxications sur des espèces non ciblées et ont perdu une partie de leur efficacité à cause des résistances génétiques constatées chez les espèces cibles. De plus, ces méthodes sont considérées comme inhumaines parce qu’elles causent une mort lente et douloureuse par hémorragies. L’olfaction est une source principale d’évaluation des risques présents dans l’environnement pour les rongeurs, avec la perception des signaux chimiques des prédateurs ou signaux de toxicité des plants/nourriture. Cette perception olfactive peut être utilisé pour modifier l’utilisation de l’espace des rongeurs. L’objectif de cette thèse était l’identification des réponses comportementales aux messages chimiques importants (par exemple les signaux chimiques émis par les plantes et les prédateurs) dans l’écologie de la souris domestique (Mus musculus), avec l’utilisation de souches de laboratoire comme modèle des animaux sauvages. Nos résultats ont montré que la souris a évité de façon significative les signaux chimiques complexes du furet et un signal chimique ubiquitaire des plantes, lié à la maturation et la pourriture des aliments (l’éthanol). La protéine du chat Fel d 1, laquelle fait partie de la famille des sécrotoglobines et est un allergène majeur du chat, n’a pas modifié le comportement d’exploration de la souris ou son comportement de recherche et de consommation de nourriture. Le composant chimique des fèces de renard, le TMT a induit un évitement clair et des réponses de stress comme cela a été rapporté dans la littérature. De plus, j’ai fait une revue de la littérature pour évaluer et discuter les méthodes de contrôle des rongeurs d’un point de vue éthique, revue qui a démontré que les méthodes actuelles peuvent être considérés inhumaines et ne correspondent pas aux attentes actuelles de la société et aux standards sur le bien-être dans d’autres domaines comme les élevages de production ou les animaux de laboratoire. Ces résultats ouvrent des nouvelles voies de recherche afin d’identifier les composants chimiques du furet et des plantes liés au comportement d’évitement des rongeurs, les prochaines étapes utilisant des animaux sauvages à la fois en laboratoire et sur le terrain. / Rodent commensal species produce great damage in agriculture and urban areas. As invasive species they can endanger local species and are carriers and vectors of several important zoonoses. Control methods rely mainly on the use of warfarins, which can be inadvertently be taken up by untargeted species. Warfarins have also lost their efficacy in rodents due to the development of genetic resistance. In addition, these methods are considered inhumane as they cause a slow and painful death due to haemorrhages. Olfaction is a main source for environmental risk assessment by rodents, and it can be used to modify their use of space. My aim in this thesis was to identify behavioural reactions of the house mouse (Mus musculus), using laboratory strains as models of wild animals, to ecologically meaningful chemical messages, including predator and plant chemical olfactory cues. My results showed that mice avoided complex ferret olfactory cues and ethanol which is a ubiquitous chemical related to fruit rotting and ripening. The feline protein Fel d 1, which belongs to the secretoglobin family and is a major cat allergen in humans, did not elicit significant avoidance or alter foraging behaviour in mice. However, Trimethylthiazoline purified from fox faeces, elicited clear avoidance behaviour and stress responses. I carried out a bibliographic review to evaluate and discuss rodent pest control methods from an ethical standpoint. This literature showed that many of the current methods of pest control are considered inhumane, and do not tally with current society concerns and welfare standards in other domains such as farms or laboratory animals. These results raise new research questions to identify ferret and plant chemical compounds that can induce rodent avoidance, and to carry out next stage of research with wild animals both under laboratory and field conditions.

La gestion et transmission d’information au sein d’organismes vivants implique la production et le trafic de molécules via des voies de signalisation sutructurées en réseaux de réactions chimiques. Ces derniers varient selon leur forme, taille ainsi que la nature des molécules mises en jeu. Parmi eux, les réseaux de régulation génétiques nous ont servi de modèle pour le développement et la mise en place d’un système de programmation moléculaire in vitro. En effet, l’expression d’un gène est majoritairement dominé par des facteurs de transcription, autres protéines ou acides nucléiques, eux-mêmes exprimés par d’autres gènes. L’ensemble forme l’interactome de la cellule, carte globale des interactions entre gènes et sous-produits, où la fonction du réseau est relié à sa topologie. L’observation des noeuds et sous-architectures dénote trois mécanismes récurrents : premièrement, la nature des interactions est de type activation ou inhibition, ce qui implique que tout comportement non trivial est obtenu par une combinaison de noeuds plutôt que le développement de nouvelles interactions. Ensuite, la longévité du réseau est assurée par la stabilité chimique de l’ADN couplée à la chimiosélectivié des réactions enzymatiques. Enfin, l’aspect dynamique est maintenu par le constant anabolisme/catabolisme des intermédiaires et donc l’utilisation de combustible/énergie. C’est suivant ces observations que nous avons développé un ensemble de trois réactions enzymatiques élémentaires : la «PEN-DNA toolbox». L’architecture du réseau, à savoir les connections entre les noeuds est médiée par la séquence de brins d’ADN synthétiques (appelés matrice), et trois enzymes (polymérase, nickase, et exonucléase) assurent la catalyse des réactions chimiques. La production et dégradation des intermédiaires consomme des désoxyribonucléotides triphosphates et rejette des désoxyribonucléotides monophosphate, dissipant ainsi le potentiel chimique. Les réactions sont suivies grâce au greffage d’un fluorophore sur le brin matriciel et au «nucleobase quenching» qui intervient lorsqu’une base d’un intermédiaire se rapproche du fluorophore après hybdridation sur le brin matriciel. L’activation correspond alors à la synthèse d’un brin output en réponse à un brin input, alors que l’inhibition survient lorsqu’un brin output s’hybride sur un brin matriciel, empêchant ainsi à l’input correspondant de s’y fixer. Oscillations, bistabilité et mémoire sont des exemples de comportements implémentés en PEN-DNA toolbox, faisant appel à des architectures de plus en plus complexes. Pour cela, un réglage fin des concentrations en effecteurs (ADN et enzymes) est nécessaire, ce qui sous-tend l’existence de plusieurs comportements pour un même circuit, dépendant des conditions paramétriques. L’établissement d’une carte de chaque combinaison de paramètres avec le comportement global associé permettrait de comprendre le fonctionnement du réseau dans son ensemble, et donnerait accès à tous les comportements disponibles. Dans le cas d’un système dynamique non linéaire, une telle carte est un diagramme de bifurcation du système. Pour explorer de manière exhaustive les possibilités d’un réseau dans un cadre expérimental raisonable, nous avons développé une plateforme microfluidique capable de générer des goutelettes d’eau dans l’huile à partir de quatres canaux aqueux différents. Ce dispositif nous donne accès, grâce à un contrôle fin des contributions de chaque canal aqueux, à des goutelettes monodisperses (volume de l’ordre du picolitre) dont le contenu est différent pour chaque goutelette. Nous avons adapté notre dispositif aux contraintes matérielles (design microfluidique, génération de goutelettes à contenu différents et controllés, observation et stabilité à long terme) et techniques (tracabilité des goutelettes et stabilité/compatibilité chimique). (...) / Information processing within and in between living organisms involves the production and exchange of molecules through signaling pathways organized in chemical reactions networks. They are various by their shape, size, and by the nature of the molecules embroiled. Among them, gene regulatory networks were our inspiration to develop and implement a new framework for in-vitro molecular programming. Indeed, the expression of a gene is mostly controlled by transcription factors or regulatory proteins and/or nucleic acids that are themselves triggered by other genes. The whole assembly draws a web of cross-interacting genes and their subproducts, in which the well controlled topology relates to a precise function. With a closer look at the links between nodes in such architectures, we identify three key points in the inner operating system. First, the interactions either activate or inhibit the production of the later node, meaning that non trivial behaviors are obtained by a combination of nodes rather than a specific new interaction. Second, the chemical stability of DNA, together with the precise reactivity of enzymes ensures the longevity of the network. Finally, the dynamics are sustained by the constant anabolism/catabolism of the effectors, and the subsequent use of fuel/energy. All together, these observations led us to develop an original set of 3 elementary enzymatic reactions: the PEN-DNA toolbox. The architecture of the assembly, i.e. the connectivity between nodes relies on the sequence of synthetic DNA strands (called DNA templates), and 3 enzymes (a polymerase, a nickase and an exonuclease) are taking care of catalysis. The production and degradation of intermediates consume deoxyribonucleoside triphosphates (dNTP) and produce deoxynucleotide monophosphates leading to the dissipation of chemical potential. Reactions are monitored thanks to a backbone modification of a template with a fluorophore and the nucleobase quenching effect consecutive to an input strand binding the template. The activation mechanism is then the production of an output following the triggering of an input strand, and the inhibition comes from the production of an output strand that binds the activator-producing sequence. Various behaviors such as oscillation, bistability, or switchable memory have been implemented, requiring more and more complex topologies. For that, each circuit requires a fine tuning in the amount of chemical parameters, such as templates and enzymes. This underlies the fact that a given network may lead to different demeanors depending on the set of parameters. Mapping the output of each combination in the parameter space to find out the panel of behaviors leads to the bifurcation diagram of the system. In order to explore exhaustively the possibilities of one circuit with a reasonable experimental cost, we developped a microfluidic tool generating picoliter-sized water-in-oil droplets with different contents. We overcame the technical challenges in hardware (microfluidic design, droplet generation and long-term observation) and wetware (tracability of the droplet and emulsion compatibility/stability). So far, bifurcation diagrams were calculated from mathematical models based on the enzymes kinetics and the thermodynamic properties of each reaction. The model was then fitted with experimental data taken in distant points in the parameter space. Here, millions of droplets are created, and each one encloses a given amount of parameters, becoming one point in the diagram. The parameter coordinates are barcoded in the droplet, and the output fluorescence signal is recorded by time lapse microscopy. We first applied this technique to a well-known network, and obtained the first experimental two-dimensional bifurcation diagram of the bistable system. The diagram enlightens features that were not described by the previous mathematical model. (...)

Prédateurs et proies sont entraînés dans une course spatiale où les prédateurs cherchent à sélectionner les zones du paysage avec une forte disponibilité en proies alors que les proies tentent d’éviter les zones du paysage avec une forte probabilité de rencontrer un prédateur. Ils procèdent incessamment à de nombreux choix susceptibles de modifier l’issue de cette course. Ainsi, en sélectionnant des endroits différents, ils peuvent tenter d'altérer les probabilités de détection, de rencontre ou encore la probabilité de réussite d’une attaque. De nombreuses études empiriques montrent l’importance de l’habitat dans ces choix. On connaît par contre peu les mécanismes de recherche (par les prédateurs) ou d’évitement (par les proies) qui ne seraient pas relatifs à l’habitat. La course spatiale ne résume cependant pas entièrement l’interaction entre prédateurs et proies, laquelle dépend de nombreux comportements non-spatiaux. La vigilance et la socialité des proies constituent des défenses relativement répandues. On a aussi fréquemment observé de nombreux exemples où les proies deviennent actives à un autre moment de la journée pour échapper à leur prédateur. Cependant, on connaît relativement peu les interactions de ces comportements avec la dimension spatiale du jeu proie-prédateur. Dans cette thèse, j'ai pour objectif de combler ces différents manques. Dans le premier chapitre, je propose un modèle théorique montrant l’importance de la prise en compte des comportements spatiaux dans l’interaction classique entre vigilance et taille de groupe chez les proies. Dans le second chapitre, je présente un mécanisme d’évitement des prédateurs par les proies, s'appuyant sur les ancres spatiales et temporelles des prédateurs et ne dépendant pas de l’habitat. Enfin, dans le dernier chapitre, je développe un modèle de choix de parcelles permettant de prévoir comment les connaissances passées sont susceptibles d'être utilisées pour orienter les déplacements. Ce modèle rappelle notamment l’importance de l’imprévisibilité du déplacement dans le jeu prédateur-proie. Ces différents travaux se placent dans le cadre d’une écologie comportementale du paysage et visent à intégrer des mécanismes comportementaux dans l’étude des dynamiques écologiques à l’échelle du paysage. / Predators and prey engage into a space race where predators seek to select areas with high prey availability while prey try to avoid areas with a high probability of encountering a predator. Predators and prey continuously make choices that can alter the outcome of this space race. For example, by using different locations in the landscape, they can alter the probability of an encounter, the probabilities of detection or the probability of success of an attack. Many empirical studies show the importance of habitat in these choices. On the other hand, little is known about avoidance by prey or predator search strategies that would be unrelated to habitat. The space race, however, does not fully summarize the interaction between predators and prey, which also depends on many non-spatial behaviors. The vigilance and grouping behaviour of prey are relatively common defenses, and there are many examples where prey become active at another time of day to escape their predator. However, it is still unclear how those behaviors interact with the spatial dimension of the prey-predator game. In this thesis, I will try to fill these gaps. In the first chapter, I propose a theoretical model showing the importance of accounting for spatial behaviors when studying the classical interaction between vigilance and group size in prey. In the second chapter, I present a mechanism of predator avoidance by prey, relying on the spatial and temporal anchors of predators and independent on the habitat. Finally, in the last chapter, I develop a patch selection model to predict how past information should be used to determine movement. This model emphasize the importance of movement unpredictability in the predator-prey game. These different works are part of a behavioral ecology of the landscape and aim to integrate behavioral mechanisms in the study of ecological dynamics at the landscape scale.

Parasitic infections, inadequate sanitation, and poor nutrition represent major etiologies that operate in synergy to cause some of the world's most disabling diseases. Citizens of developing nations, especially children living in rural areas, are the most affected. Current research and subsequent interventions have attempted to solve these issues using vertical interventions aimed at minimizing specific health outcomes. This approach does not consider the interaction among causes and the interrelationship between human beings and their environment. Challenges solved in this manner often fail to produce sustainable results or worse, create new problems. This project proposed the systems approach framework to address these challenges. The systems thinking dynamical modeling software, STELLA®, was used to model the conditions that promoted and/or hindered Ascaris lumbricoides and other gastrointestinal parasitic diseases in the rural developing community of Paquila, Guatemala. The interventions chosen were: administration of anti - helminthic drugs, supplying protein nutrition, and an excreta management system that allowed for effluent recycling to crop production. A new design for a Solar Latrine was proposed and the solar heating and microbial deactivation processes were modeled using the commerically available, Finite Element Method software COMSOL®. From the simulations, disease eradication was most likely to occur when at least 50% of the host population were treated every 3 months for 2 years or more with an anti - helminthic drug of 94% efficacy or better, latrine coverage and usage were at least 70%, and nutrition was provided at about 1.1 g protein per kg (human mass) per day. Given the climatic conditions in Paquila and the proposed latrine design, sustained treatement temperatures of up to 65°C were possible in the fecal materail and with a minimum of 1 month (4 months maximum) retention time, it was concluded that the resulting humanure would meet US EPA Class A Biosolids microbial requirements.

Nabis kinbergii is a native polyphagous predator in Australia. It has been found in all states and territories of Australia. N. kinbergii has been regarded as an efficient predator of many insect pests in lucerne, cotton and particularly brassica crops. The circadian rhythms, the effects of different prey on development and reproduction, and prey preferences of N. kinbergii have not been studied in South Australia. These are the subjects of this thesis. N. kinbergii is more active at night than in the day. They seemed to be still more frequently at dawn and more active at dusk under natural environmental conditions. Yet, their behaviour was possibly different when they were held in a controlled environment with artificial light. Under both natural and artificial lighting conditions, they would spend more time moving on plants at night. They spent less time moving than other activities. Furthermore, they were more active during the second day of the observations, probably because of the hunger. A mixed diet including Plutella xylostella, Myzus persicae and Brevicoryne brassicae brought the most significant positive influences to the development, survival and longevity of N. kinbergii. It had a shorter preoviposition period and greater egg production when fed on P. xylostella than when fed on M. persicae. Among the three prey, B. brassica was the poorest food because the survival rate between egg hatch and adult eclosion was only 7.5 %, compared to 85 %, 92.5 % and 97.5 % when N. kinbergii fed on M. persicae, P. xylostella and a mixed diet, respectively. Evidence of prey preference was exhibited by N. kinbergii. B. brassica seemed to be the least preferred food. N. kinbergii possibly attacked less mobile prey and delayed eating prey with poor nutrition or that were toxic. In wind tunnel experiments, N. kinbergii may have been attracted by plant volatiles rather than prey odour. These findings may help to refine the timing of experiments and improve the understanding of the role of this predator in integrated pest management. / Thesis (M.Sc.) -- University of Adelaide, School of Agriculture, Food and Wine, 2008

Understanding the interactions of predators and their prey and their responses to environmental changes is one of the striking features of ecological research. In this thesis, spring dynamics of phytoplankton and its consumers, zooplankton, were considered in dependence on the environmental conditions in a deep lake (Lake Constance) and a shallow marine water (mesocosms from Kiel Bight), using descriptive statistics, multiple regression models, and process-oriented dynamic simulation models. The development of the spring phytoplankton bloom, representing a dominant feature in the plankton dynamics in temperate and cold oceans and lakes, may depend on temperature, light, and mixing intensity, and the success of over-wintering phyto- and zooplankton. These factors are often correlated in the field. Unexpectedly, irradiance often dominated algal net growth rather than vertical mixing even in deep Lake Constance. Algal net losses from the euphotic layer to larger depth were induced by vertical mixing, but were compensated by the input from larger depth when algae were uniformly distributed over the water column. Dynamics of small, fast-growing algae were well predicted by abiotic variables, such as surface irradiance, vertical mixing intensity, and temperature. A simulation model additionally revealed that even in late winter, grazing may represent an important loss factor of phytoplankton during calm periods when losses due to mixing are small. The importance of losses by mixing and grazing changed rapidly as it depended on the variable mixing intensity. Higher temperature, lower global irradiance and enhanced mixing generated lower algal biomass and primary production in the dynamic simulation model. This suggests that potential consequences of climate change may partly counteract each other. The negative effect of higher temperatures on phytoplankton biomass was due to enhanced temperature-sensitive grazing losses. Comparing the results from deep Lake Constance to those of the shallow mesocosm experiments and simulations, confirmed the strong direct effect of light in contrast to temperature, and the importance of grazing already in early spring as soon as moderate algal biomasses developed. In Lake Constance, ciliates dominated the herbivorous zooplankton in spring. The start of ciliate net growth in spring was closely linked to that of edible algae, chlorophyll a and the vertical mixing intensity but independent of water temperature. The duration of ciliate dominance in spring was largely controlled by the highly variable onset of the phytoplankton bloom, and little by the less variable termination of the ciliate bloom by grazing of meta-zooplankton. During years with an extended spring bloom of algae and ciliates, they coexisted at relatively high biomasses over 15-30 generations, and internally forced species shifts were observed in both communities. Interception feeders alternated with filter feeders, and cryptomonads with non-cryptomonads in their relative importance. These dynamics were not captured by classical 1-predator-1-prey models which consistently predict pronounced predator-prey cycles or equilibria with either the predator or the prey dominating or suppressed. A multi-species predator-prey model with predator species differing in their food selectivity, and prey species in their edibility reproduced the observed patterns. Food-selectivity and edibility were related to the feeding and growth characteristics of the species, which represented ecological trade-offs. For example, the prey species with the highest edibility also had the highest maximum growth rate. Data and model revealed endogenous driven ongoing species alternations, which yielded a higher variability in species-specific biomasses than in total predator and prey biomass. This holds for a broad parameter space as long as the species differ functionally. A more sophisticated model approach enabled the simulation of a continuum of different functional types and adaptability of predator and prey communities to altered environmental conditions, and the maintenance of a rather low model complexity, i.e., low number of equations and free parameters. The community compositions were described by mean functional traits --- prey edibility and predator food-selectivity --- and their variances. The latter represent the functional diversity of the communities and thus, the potential for adaptation. Oscillations in the mean community trait values indicated species shifts. The community traits were related to growth and grazing characteristics representing similar trade-offs as in the multi-species model. The model reproduced the observed patterns, when nonlinear relationships between edibility and capacity, and edibility and food availability for the predator were chosen. A constant minimum amount of variance represented ongoing species invasions and thus, preserved a diversity which allows adaptation on a realistic time-span. / Eine der großen Herausforderungen der heutigen ökologischen Forschung ist es, Veränderungen von Ökosys­temen vorher­zusagen, die mit dem Klimawandel einhergehen. Dafür sind ein umfassendes Verständnis der ver­schiedenen Steuerungsfaktoren des entsprechenden Systems und Kenntnisse zur Anpassungs­fähigkeit des Systems nötig. Auf der Grundlage dieses Wissens, können mit mathemati­schen Modellen Klima­szenarien gerechnet und Vorhersagen erstellt werden. Die vorliegende Arbeit untersuchte die Regulation des Phytoplanktons (kleine freischwebende einzellige Algen) und seiner Konsumenten (Zooplankton, tierische Kleinstlebewesen) sowie deren Wechselspiel während des Frühjahrs mit Bezug auf den Klimawandel. Als Basis dienten langjährige Daten von einem großen tiefen See (Bodensee) sowie Daten von Versuchen mit Organis­men aus einem flachen marinen Ge­wässer (Kieler Förde, Ostsee). Diese Daten wurden mit statistischen Verfahren und mathematischen Modellen ausge­wertet. In Gewässern sind Algen als Primärproduzenten die Nahrungsgrundlage für tieri­sche Organismen bis hin zu Fischen und Meeresfrüchten, und bestimmen die Wasserqualität der Ge­wässer. Daher ist es wichtig zu verstehen, welche Mechanismen die Dynamik der Algen steuern. Der Grundstein für die saisonale Entwicklung von Phyto- und Zooplankton in Gewässern un­serer Breiten wird mit dem Be­ginn des Wachstums im Frühjahr gelegt. Diese Arbeit zeigt, dass es bereits im zeitigen, noch kalten Frühjahr ein Wechselspiel physikalischer und biologischer Steuerungsmechanismen für die Algenent­wicklung gibt. Physikalische Faktoren sind die Wassertemperatur, die Globalstrahlung und die Durchmischung des Gewässers, die durch die Stärke des Windes beeinflusst wird. All diese Steue­rungsmechanismen sind eng miteinander verwoben und werden unterschiedlich stark vom Klimawan­del beeinflusst. Mit mathematischen Modellen gelang es den Einfluss einzelner Faktoren voneinander zu trennen und zu zeigen, dass Effekte durch den Klimawandel sich gegenseitig aufheben oder aber auch verstärken können. Schon geringe Änderungen an der Basis der Nahrungsnetze können weitrei­chende Auswirkungen auf höhere Ebenen habe. Wie stark diese Auswirkungen im Einzelnen sind, hängt entscheidend von der Anpassungsfähigkeit gesamter Ökosysteme und ihrer Artengemeinschaf­ten sowie einzelner Individuen ab. Beispielsweise reagiert die Algengemeinschaft auf einen starken Fraßdruck ihrer Räuber mit einer Verschiebung zu weniger gut fressbaren Algenarten. Diese weniger gut fressbaren Arten unterscheiden sich jedoch auch in anderen Eigenschaften, wie zum Beispiel der Ressourcenausnutzung, von besser fressbaren Algen. In dieser Arbeit wurden Modellansätze entwi­ckelt, die diese Fähigkeit zur Anpassung berücksichtigen. Auf dieser Grundlage und mit Einbeziehung der physikalischen Steuerungsfaktoren können Klimaszenarien gerechnet werden und Vorhersagen für den Einfluss des Klimawandels auf unsere Gewässer gemacht werden, die letztlich auch Perspektiven für Handlungsmöglichkeiten aufzeigen.