L'épissage alternatif des ARNs pré-messagers est le mécanisme majeur de diversification de l'information génétique chez les eucaryotes supérieurs. Près de 70% des gènes sont concernés par ce mécanisme. Il arrive malgré tout que l'épissage alternatif soit dérégulé ce qui conduit à des défauts d'épissage qui provoquent des maladies telles que le syndrome progérique de Hutchinson-Gilford (HGPS). Cette maladie se caractérise notamment par une apparition précoce des signes distinctifs de la vieillesse ainsi que de défauts métaboliques majeurs. Mon travail de thèse a consisté à sélectionner et à caractériser des composés chimiques modulateurs de l'épissage alternatif en se basant sur le mécanisme moléculaire conduisant à la progeria. Par la suite, l'efficacité de ces molécules a été testée dans des modèles de souris obèses. Parmi une chimiothèque de plus de 700 molécules chimiques, j'ai pu sélectionner sur différents critères une vingtaine de molécules modulatrices de l'épissage de l'exon 11 du gène LMNA. Une seule molécule a été capable de diminuer la prise de poids de souris mises sous régime hyperlipidique en favorisant la mise à disposition des lipides et en diminuant la différenciation adipocytaire grâce à son action sur les micros ARN. / Alternative splicing of pre-messenger RNA is the major mechanism to increase genetic variability in superior eukaryotes. Almost 70 % of genes are concerned by the mechanism. In some case this tightly regulated process is deregulated leading to splicing defects and diseases like Hutchinson-Gilford Progeroid Syndrome (HGPS). HGPS is characterized by a premature ageing and important metabolism defects.My thesis work was to select and characterized chemical compounds modulating alternative splicing based on molecular mechanism leading to HGPS. We further tested efficiency of these molecules in diet-induced obesity mice.Among a library of 700 compounds, I was able to select twenty molecules modulating splicing event of LMNA gene exon 11. One unique molecule was found to decrease weight gain in a mouse model under high-fat diet condition trough increasing lipolysis and lipids mobilization, and decreasing adipocyte differentiation.

<p>Tobacco smoking during pregnancy and lactation is a common habit and accounts for a significant percentage of fetal morbidity and mortality worldwide. The offspring is as a result exposed to nicotine through the blood and the milk of the mother. Nicotine is thus expected to interact with the developing fetus and the offspring of mothers who smoke or use NRT for smoking cessation, resulting in the interference with normal fetal and neonatal lung development. Maternal cigarette smoke or nicotine exposure produces adverse effects in the lungs of offspring, these include / intrauterine growth retardation, low birth weight, premature birth, reduced pulmonary function at birth, and a high occurrence of respiratory illnesses after birth. This study aimed at investigating&nbsp / the effects of maternal nicotine exposure during gestation and lactation on lung development in the offspring / to establish whether tomato juice can have protective effects on the fetal lung&nbsp / development and function in the offspring / and to determine if nicotine cases premature aging of the lungs of the offspring. It was therefore shown that maternal exposure to nicotine during&nbsp / gestation and lactation ad no significant effect on the growth parameters of the offspring. Maternal nicotine exposure during gestation and lactation had no effect on the growth parameters of&nbsp / the offspring, but resulted in compromised lung structure and function. The morphometric results demonstrated decrease in alveolar number, increase in alveolar size, and decrease in lung&nbsp / parenchyma of the nicotine exposed animals showing a gradual deterioration of the lung parenchyma. Structural alterations include emphysematous lesions, where the latter was&nbsp / accompanied by an increase in alveolar size (Lm), and a decrease in the tissue volume of the lung parenchyma. Thickening of alveolar walls was also evident and serves as an indication of&nbsp / remodeling of the extracellular matrix, also a characteristic of emphysema. A consequence of the gradual deterioration of the lung parenchyma is a decrease in the alveolar surface area available for gas exchange. The present study showed that the emphysematous lesions were conceivably a result of a reduced rate of cell proliferation accompanied by the increase in&nbsp / senescent cells numbers in the alveolar walls of the exposed offspring. The data of this study suggests that maternal nicotine exposure during gestation and lactation induces premature&nbsp / aging of the lungs of the offspring rendering the lungs of the offspring more susceptible to disease later in life. Since these structural changes occurred later in the life of the offspring and long&nbsp / after nicotine withdrawal, it is suggested that it is programmed during gestation and lactation. Smoking and NRT result in an increased load of oxidants in the mother and fetus. It also reduces&nbsp / the level of anti-oxidants and thereby compromising the ability of the mother to protect the fetus. It is hypothesized that this oxidant-antioxidant imbalance will program the lungs to age&nbsp / prematurely. The supplementation of the mother&rsquo / s diet with tomato juice, rich in lycopene, other anti-oxidants such as vitamin C, as well as phytonutrients protected the lungs of the offspring&nbsp / against the adverse effects of maternal nicotine exposure. This supports the hypothesis mentioned above. The study further showed that the effects of grand-maternal nicotine exposure during gestation and lactation on the lungs of the F1 offspring is also transferred to the F2 offspring. This is most likely via the paternal and maternal germ line. Since tomato juice supplementation of the mother&rsquo / s diet with tomato juice prevented&nbsp / the adverse effects of maternal nicotine exposure on the lungs of the offspring, it is conceivable that it will prevent transfer of these changes to the F2 generation.&nbsp / </p>

<p>Tobacco smoking during pregnancy and lactation is a common habit and accounts for a significant percentage of fetal morbidity and mortality worldwide. The offspring is as a result exposed to nicotine through the blood and the milk of the mother. Nicotine is thus expected to interact with the developing fetus and the offspring of mothers who smoke or use NRT for smoking cessation, resulting in the interference with normal fetal and neonatal lung development. Maternal cigarette smoke or nicotine exposure produces adverse effects in the lungs of offspring, these include / intrauterine growth retardation, low birth weight, premature birth, reduced pulmonary function at birth, and a high occurrence of respiratory illnesses after birth. This study aimed at investigating&nbsp / the effects of maternal nicotine exposure during gestation and lactation on lung development in the offspring / to establish whether tomato juice can have protective effects on the fetal lung&nbsp / development and function in the offspring / and to determine if nicotine cases premature aging of the lungs of the offspring. It was therefore shown that maternal exposure to nicotine during&nbsp / gestation and lactation ad no significant effect on the growth parameters of the offspring. Maternal nicotine exposure during gestation and lactation had no effect on the growth parameters of&nbsp / the offspring, but resulted in compromised lung structure and function. The morphometric results demonstrated decrease in alveolar number, increase in alveolar size, and decrease in lung&nbsp / parenchyma of the nicotine exposed animals showing a gradual deterioration of the lung parenchyma. Structural alterations include emphysematous lesions, where the latter was&nbsp / accompanied by an increase in alveolar size (Lm), and a decrease in the tissue volume of the lung parenchyma. Thickening of alveolar walls was also evident and serves as an indication of&nbsp / remodeling of the extracellular matrix, also a characteristic of emphysema. A consequence of the gradual deterioration of the lung parenchyma is a decrease in the alveolar surface area available for gas exchange. The present study showed that the emphysematous lesions were conceivably a result of a reduced rate of cell proliferation accompanied by the increase in&nbsp / senescent cells numbers in the alveolar walls of the exposed offspring. The data of this study suggests that maternal nicotine exposure during gestation and lactation induces premature&nbsp / aging of the lungs of the offspring rendering the lungs of the offspring more susceptible to disease later in life. Since these structural changes occurred later in the life of the offspring and long&nbsp / after nicotine withdrawal, it is suggested that it is programmed during gestation and lactation. Smoking and NRT result in an increased load of oxidants in the mother and fetus. It also reduces&nbsp / the level of anti-oxidants and thereby compromising the ability of the mother to protect the fetus. It is hypothesized that this oxidant-antioxidant imbalance will program the lungs to age&nbsp / prematurely. The supplementation of the mother&rsquo / s diet with tomato juice, rich in lycopene, other anti-oxidants such as vitamin C, as well as phytonutrients protected the lungs of the offspring&nbsp / against the adverse effects of maternal nicotine exposure. This supports the hypothesis mentioned above. The study further showed that the effects of grand-maternal nicotine exposure during gestation and lactation on the lungs of the F1 offspring is also transferred to the F2 offspring. This is most likely via the paternal and maternal germ line. Since tomato juice supplementation of the mother&rsquo / s diet with tomato juice prevented&nbsp / the adverse effects of maternal nicotine exposure on the lungs of the offspring, it is conceivable that it will prevent transfer of these changes to the F2 generation.&nbsp / </p>

Philosophiae Doctor - PhD / exposed to nicotine through the blood and the milk of the mother. Nicotine is thus expected to interact with the developing fetus and the offspring of mothers who smoke or use NRT for smoking cessation, resulting in the interference with normal fetal and neonatal lung development. Maternal cigarette smoke or nicotine exposure produces adverse effects in the lungs of offspring, these include; intrauterine growth retardation, low birth weight, premature birth, reduced pulmonary function at birth, and a high occurrence of respiratory illnesses after birth. This study aimed at investigating the effects of maternal nicotine exposure during gestation and lactation on lung development in the offspring; to establish whether tomato juice can have protective effects on the fetal lung development and function in the offspring; and to determine if nicotine cases premature aging of the lungs of the offspring. It was therefore shown that maternal exposure to nicotine during gestation and lactation ad no significant effect on the growth parameters of the offspring. Maternal nicotine exposure during gestation and lactation had no effect on the growth parameters of the offspring, but resulted in compromised lung structure and function. The morphometric results demonstrated decrease in alveolar number, increase in alveolar size, and decrease in lung parenchyma of the nicotine exposed animals showing a gradual deterioration of the lung parenchyma. Structural alterations include emphysematous lesions, where the latter was accompanied by an increase in alveolar size (Lm), and a decrease in the tissue volume of the lung parenchyma. Thickening of alveolar walls was also evident and serves as an indication of remodeling of the extracellular matrix, also a characteristic of emphysema. A consequence of the gradual deterioration of the lung parenchyma is a decrease in the alveolar surface area available for gas exchange. The present study showed that the emphysematous lesions were conceivably a result of a reduced rate of cell proliferation accompanied by the increase in senescent cells numbers in the alveolar walls of the exposed offspring. The data of this study suggests that maternal nicotine exposure during gestation and lactation induces premature aging of the lungs of the offspring rendering the lungs of the offspring more susceptible to disease later in life. Since these structural changes occurred later in the life of the offspring and long after nicotine withdrawal, it is suggested that it is programmed during gestation and lactation. Smoking and NRT result in an increased load of oxidants in the mother and fetus. It also reduces the level of anti-oxidants and thereby compromising the ability of the mother to protect the fetus. It is hypothesized that this oxidant-antioxidant imbalance will program the lungs to age prematurely. The supplementation of the mother’s diet with tomato juice, rich in lycopene, other anti-oxidants such as vitamin C, as well as phytonutrients protected the lungs of the offspring against the adverse effects of maternal nicotine exposure. This supports the hypothesis mentioned above. The study further showed that the effects of grand-maternal nicotine exposure during gestation and lactation on the lungs of the F1 offspring is also transferred to the F2 offspring. This is most likely via the paternal and maternal germ line. Since tomato juice supplementation of the mother’s diet with tomato juice prevented the adverse effects of maternal nicotine exposure on the lungs of the offspring, it is conceivable that it will prevent transfer of these changes to the F2 generation. / South Africa

Magister Scientiae (Medical Bioscience) - MSc(MBS) / Cigarette smoking is one of the foremost causes of chronic obstructive pulmonary diseases such as emphysema and chronic bronchitis, and although it is the most preventable causes of death, it accounts for approximately 6 million deaths worldwide each year. Cigarette smoking during pregnancy and lactation remains one of the primary modifiable risk factors for undesirable fetal, obstetrical, and developmental outcomes. Consequently, the offspring of the smoking mother is exposed to nicotine via the blood and the milk of the mother. As a result, nicotine interacts with the developing offspring and therefore interferes with normal fetal lung development. Maternal smoking during gestation and lactation has been associated with both short and long term health risks ranging from intrauterine growth restriction to physiological abnormalities. Maternal smoking has also been strongly linked to an increased risk for pulmonary diseases and respiratory morbidity in the offspring of the smoking mother. The main objectives of this study were to determine the effects of maternal nicotine exposure during gestation and lactation on the alveolar wall composition during lung development in the offspring; if maternal nicotine exposure during gestation and lactation induces premature cellular senescence in the lungs of the offspring; to clarify the role of pulmonary fibroblasts in premature senescence; and to establish whether tomato juice supplementation will prevent premature aging in the lungs of rats that were exposed to nicotine via the placenta and mother’s milk. From the data generated in this study it was evident that maternal nicotine exposure during gestation and lactation compromises the gas exchange function of the lungs of the F1 offspring. This was prevented by supplementing the mother’s diet with tomato juice which is then received by the offspring via the placenta and mother’s milk. This is conceivably achieved by maintaining the oxidant-anti-oxidant ratio of the mother and of the developing fetus and neonate, thereby averting premature senescence caused by nicotine exposure. Moreover, the present study also demonstrates that a decrease in fibroblast density is associated with emphysematous-like lesions in the lungs of the nicotine exposed F1 progeny. Since pulmonary fibroblasts are chief contributors to the extracellular matrix of the lungs, involved in alveolar multiplication and regeneration; premature aging or cessation of the metabolically active fibroblasts largely contributes to diminished lung structure and function.

A common feature of progeria syndromes is a premature aging phenotype and an enhanced accumulation of DNA damage arising from a compromised repair system. HGPS (Hutchinson-Gilford progeria syndrome) is a severe form of progeria in which patients accumulate progerin, a mutant lamin A protein derived from a splicing variant of the lamin A/C gene (LMNA). Progerin causes chromatin perturbations which result in the formation of DSBs (double-strand breaks) and abnormal DDR (DNA-damage response). In the present article, we review recent findings which resolve some mechanistic details of how progerin may disrupt DDR pathways in HGPS cells. We propose that progerin accumulation results in disruption of functions of some replication and repair factors, causing the mislocalization of XPA (xeroderma pigmentosum group A) protein to the replication forks, replication fork stalling and, subsequently, DNA DSBs. The binding of XPA to the stalled forks excludes normal binding by repair proteins, leading to DSB accumulation, which activates ATM (ataxia telangiectasia mutated) and ATR (ATM- and Rad3-related) checkpoints, and arresting cell-cycle progression.

No description available.

Development and aging, two fundamental aspects of life, remain key biological processes that researchers try to understand. Drosophila melanogaster, thanks to its various merits, serves as an excellent model to study both of these processes. This thesis includes two parts. In the first part, I discuss our finding that the presynaptic neuron controls a retrograde signaling pathway by releasing essential components via exosomes. During synaptic development, postsynaptic cells send retrograde signals to adjust the activity and growth of presynaptic cells. It remains unclear what the mechanism is which triggers the release of retrograde signals; and how presynaptic cells are involved in this signaling event. The first part of this thesis demonstrates that a retrograde signal mediated by Synaptotagmin4 (Syt4) depends on the anterograde delivery of Syt4 protein from the presynaptic neuron to the muscle compartment likely through exosomes. This trans-synaptic transfer of Syt4 is required for the retrograde control of activity-dependent synaptic growth at the Drosophila larval neuromuscular junction. In the second part of this thesis, I talk about our discovery that the disruption of nuclear envelope (NE) budding, a novel RNA export pathway, is linked to the loss of mitochondrial integrity and premature aging in Drosophila. We demonstrate that several transcripts, which are essential for mitochondrial integrity and function, use NE-budding for nuclear export. Transgenic Drosophila expressing a LamC mutation modeling progeroid syndrome (PS), a premature aging disorder in humans, displays accelerated aging-related phenotypes including progressive mitochondrial degeneration as well as decreased levels of a specific mitochondrial transcript which is normally enriched at NE-budding site. The PS-modeled LamC mutants exhibit abnormal lamina organization that likely disrupts the egress of these RNAs via NE-budding. These results connect defective RNA export through NE-budding to progressive loss of mitochondrial integrity and premature aging in Drosophila.

Environ 30% des cancers humains ont une mutation gain de fonction dans l’oncogène RAS, menant à une prolifération cellulaire accrue et une expansion clonale. Cependant, il est bien établi qu’une hyperactivation soutenue de cette voie mène au phénotype inverse, soit la sénescence cellulaire, définie par un arrêt stable de la prolifération. Ce destin cellulaire caractérise les lésions bénignes et la progression vers une tumeur maligne est associée à son contournement. Toutefois, les mécanismes moléculaires permettant aux cellules de distinguer entre une signalisation normale et oncogénique par RAS afin de les engager vers la sénescence plutôt que la prolifération demeurent inconnus. Ainsi, l’hypothèse à la base de ces travaux est que la décision d’engagement vers la sénescence implique une reprogrammation transcriptionnelle qui précède l’établissement des phénotypes caractéristiques de la sénescence, tel le phénotype sécrétoire (SASP) (Article 1). Nous avons ainsi identifié un point de restriction (SeRP) critique pour l’engagement des cellules vers la sénescence en réponse à l’oncogène HRASG12V. Ce SeRP intègre l'intensité et la durée du stress oncogénique, tout en gardant une mémoire des stress antérieurs, en modulant l’accessibilité à la chromatine via l’induction d’un réseau auto-régulé de facteurs de transcription comprenant notamment ETV4 et RUNX1 (Article 2). Notre modèle actuel nous porte à croire que cette augmentation d’accessibilité à la chromatine impliquerait principalement une décondensation de l’hétérochromatine périnucléolaire. Ceci mènerait à l’induction du SASP et aux défauts de ribogénèse observés dans la sénescence. Nous montrons d’ailleurs via la génération d’un modèle murin transgénique que l’induction de tels défauts de ribogénèse à l’échelle systémique mène à un phénotype de vieillissement prématuré suggérant une sénescence des cellules souches (Article 3). Les cellules souches ayant des niveaux particulièrement élevés de ribogénèse et étant très sensibles à des altérations de leur niche tels que l’inflammation chronique, nous pensons que, de manière fortuite, ce modèle reproduit en quelque sorte les conséquences du SeRP. En somme, l’ensemble des travaux présentés dans cette thèse permettent une meilleure compréhension des mécanismes moléculaires régulant l’engagement vers la sénescence. À termes, ces nouvelles notions permettraient de concevoir des stratégies thérapeutiques permettant de faire pencher la balance vers la sénescence dans un contexte de cancers mutés en RAS. / Around 30% of human cancers have a gain-of-function mutation in the RAS oncogene, resulting in increased cell proliferation and clonal expansion. However, it is well established that a sustained hyperactivation of this same pathway leads instead to the opposite phenotype, namely cellular senescence, which is defined by a stable proliferation arrest. This cell fate characterizes benign lesions and progression to malignancy is associated with its bypass. However, the molecular mechanisms allowing cells to distinguish between normal and oncogenic RAS signaling in order to commit them to senescence rather than proliferation remain unknown. Thus, the hypothesis underlying the present work is that this decision to commit to senescence involves a transcriptional reprogramming that precedes the establishment of the senescence-characteristic phenotypes such as the secretory phenotype (Article 1). We have thus identified a restriction point (SeRP) critical for the commitment of cells towards senescence in response to HRASG12V oncogene. This SeRP integrates both the intensity and duration of oncogenic stress while keeping a memory of previous stresses. This integration is achieved by modulating chromatin accessibility via the induction of a self-regulated network of transcription factors including among others ETV4 and RUNX1 (Article 2). Our current model leads us to believe that this increase in chromatin accessibility during the SeRP would mainly involve decondensation of perinucleolar heterochromatin. This would lead to the induction of the pro-inflammatory secretome of senescent cells (SASP) and the ribogenesis defects observed in senescence. Besides, we show via the generation of a transgenic mouse model that the induction of such ribogenesis defects at the systemic scale leads to a premature aging phenotype suggesting stem cells senescence (Article 3). Stem cells having particularly high levels of ribogenesis and being very sensitive to alterations of their niche such as chronic inflammation, we believe that serendipitously, this model somehow reproduces the consequences of the SeRP. In short, all the work presented in this thesis allows for a better understanding of the molecular mechanisms regulating the commitment to senescence. Ultimately, these new notions would allow to design therapeutic strategies to tip the balance towards senescence in the context of RAS-mutated cancers.

Les gènes et les protéines n’agissent pas de manière isolée dans les cellules, mais interagissent plutôt pour faire leurs fonctions dans les processus biologiques. Ces interactions peuvent être représentées sous forme de grands réseaux dans lesquels les nœuds sont des gènes ou des protéines et les arêtes représentent leurs interactions. Diverses approches basées sur la théorie des graphes ont été développées pour extraire la connaissance fonctionnelle contenue dans ces réseaux. Néanmoins, ces méthodes ont été principalement appliquées à des réseaux individuels, en ignorant la diversité des interactions biologiques. Nous déclarons que ces différents types d’interactions peuvent être représentés sous la forme de réseaux multiplexes, c’est-à-dire des ensembles de réseaux partageant les mêmes nœuds, ce qui permet une description plus précise des systèmes biologiques. Cette thèse est focalisée sur le développement de nouveaux algorithmes étendant aux réseaux multiplexes certaines méthodes populaires de la théorie des graphes en biologie computationnelle, ainsi que sur leur application à l’étude des maladies humaines. Du côté des applications, nous nous concentrons sur les maladies liées au vieillissement prématuré, un groupe de maladies génétiques ressemblant à certains aspects du vieillissement physiologique à un âge précoce. Nous avons appliqué nos algorithmes pour détecter les modules associés à plus de 70 syndromes annotés avec un phénotype lié au vieillissement prématuré. Les résultats ont révélé le paysage des processus moléculaires perturbés dans ces maladies, qui peuvent être mis en parallèle avec les caractéristiques du vieillissement physiologique. / Genes and proteins do not act isolated in cells but rather interact to perform their functions in signaling pathways, molecular complexes, or, more generally, biological processes. These interactions can be represented as large networks in which nodes are genes or proteins and edges represent their interactions. Various graph-theory based approaches have been developed to extract the functional knowledge contained in biological networks. Nevertheless, these methods have been mainly applied to individual networks, ignoring the diversity of biological interactions. We state here that these different types of interactions can be represented as multiplex networks, i.e. collections of networks sharing the same nodes, leading to a more accurate description of biological systems. This thesis focuses on the extension from individual to multiplex networks of some of the state-of-the-art guilt-by-association methods in computational biology, and on their application to the study of human diseases. On the application side, we concentrate on premature aging diseases, a group of rare genetic disorders that resemble some aspects of physiological aging at an early age. In this framework, we applied our algorithms to detect the modules associated to more than 70 disorders annotated with at least one premature aging related phenotype. The results revealed the landscape of perturbed molecular processes in premature aging diseases, which can be paralleled with the hallmarks of physiological aging to help identifying common and specific features.