Made available in DSpace on 2014-08-20T14:37:57Z (GMT). No. of bitstreams: 1 dissertacao_matheus_folgearin_silveira.pdf: 274999 bytes, checksum: 17765fa39ad1a46f221283537ac0adae (MD5) Previous issue date: 2009-05-20 / Soft tissue sarcomas are mesenchymal origin neoplasms collectively classified according to histological characteristics and biological behaviour similiarities. Various neoplasms are included in this major group, as fibrosarcoma, hemangiosarcoma, peripheral nerve sheath tumor, myxosarcoma, liposarcoma, leiomyosarcoma, rhabdomiosarcoma, malignant fibrous histiocytoma, synovial cell sarcoma and undifferentiated sarcoma. The microvessel density measure has been applied to investigate tumor angiogenesis in many neoplasms. The objectives of this study were to evaluate de microvessel density in canine and feline soft tissue sarcomas and compare the general vessel measurement area and intense vascular areas hot spot. Those data were compared to usually applied prognostic factors like mitotic index, necroses presence and amount and cellular differentiation. Soft tissue sarcomas were collected in Laboratório Regional de Diagnóstico da Universidade Federal de Pelotas from 1978 to 2008 among canine and feline necropsies and biopsies. In a total of 1668 neoplasms cases during this period, 100 were soft tissue sarcomas, 87 canine and 13 feline. Sex prevalence was not observed in the analyzed species. The major prevalence in canine were hemangiosarcomas (n=34) and fibrosarcomas (n=20), being the mongrel dogs (n=35) most. The large breeds presented major frequence (n=22), followed by medium size (n=16) and small sized breeds (n=9). . In feline population, there were not accentuated prevalence, exciding hemangiosarcomas (n=4) and fibrosarcomas (n=4). In those 100 cases, 39 paraffin blocks were obtained, being 36 canine and 3 feline, mostly mongrel specimens, with 9,21(±2,99) medium age. The general vascular and hot spot areas were significantly correlated (r2=0,98; p<0,01). The mitotic index between areas were in those areas (r2=0,95, p<0,01). Hemangiosarcomas presented major vascular media in the techniques, followed by muscular sarcomas and fibrosarcomas (p<0,05). The microvessel density in soft tissue sarcomas do not present correlation to other prognostic factor usually applied. Hot spot areas can be utilized to determine the vascular degree and mitotic index in soft tissue sarcomas. / Os sarcomas de tecidos moles são neoplasmas de origem mesenquimal classificados coletivamente devido a características histológicas e comportamento biológico similares. Vários neoplasmas estão incluídos neste grande grupo, como fibrossarcoma, hemangiossarcoma, tumor de bainha de nervo periférico, mixossarcoma, lipossarcoma, leiomiossarcoma, rabdomiossarcoma, histiocitoma fibroso maligno, sarcoma sinovial e sarcoma indiferenciado. A mensuração da densidade vascular tem sido utilizada para investigar a angiogênese tumoral em diferentes neoplasmas. Este estudo teve como objetivo a determinação da microdensidade vascular de sarcomas de tecidos moles caninos e felinos através da comparação entre a mensuração geral vascular e áreas de intensa proliferação hot spot. Estes dados foram comparados a fatores prognósticos usualmente empregados, como índice mitótico, presença e quantidade de necrose e diferenciação celular. Os sarcomas de tecidos moles foram resgatados dos arquivos do Laboratório Regional de Diagnóstico da Universidade Federal de Pelotas entre 1978 a 2008 dentre necropsias e biópsias caninas e felinas. Num total de 1668 neoplasmas deste período, 100 eram sarcomas de tecidos moles, sendo 87 caninos e 13 felinos. Não se observou prevalência de sexo nas espécies analisadas. Em caninos, a maior prevalência foi de hemangiossarcomas (n=34) e fibrossarcomas (n=20), sendo os sem raça definida (n=35) os mais acometidos. Os animais de porte grande apresentaram maior freqüência (n=22), seguidos pelos de porte médio (n=16) e de porte pequeno (n=9). Em felinos não houve uma prevalência acentuada, destacando-se os hemangiossarcomas (n=4) e fibrossarcomas (n=4). Destes 100, obtiveram-se blocos de 39 casos, sendo 36 caninos e 3 felinos, em sua maioria sem raça definida nas duas espécies, com idade média observada foi de 9,21(±2,99 anos). A mensuração vascular geral e de áreas hot spot apresentaram correlação significativa (r2=0,98; p<0,01). O índice mitótico nas duas áreas observadas foram significativas (r2=0,95, p<0,01). Os hemangiossarcomas apresentaram maior média vascular nas duas técnicas, seguidos pelos sarcomas musculares e fibrossarcomas (p<0,05). Houve diferença entre os hemangiossarcomas e os fibrossarcomas, e os sarcomas musculares não diferiram desses (p<0,05). A microdensidade vascular em sarcomas de tecidos moles não apresentou correlação com outros fatores empregados usualmente. A visualização de campos hot spot pode ser utilizada para determinar o grau vascular e índice mitótico.

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Les sarcomes à « génétique complexe » sont des tumeurs rares du tissu mésenchymateux. Ces tumeurs sont caractérisées par un nombre important de réarrangements chromosomiques et possèdent un génome complexe dans lequel aucune altération n’avait été retrouvée de manière spécifique et récurrente. Le but de ma thèse était donc d’identifier les conséquences de cette complexité chromosomique et de comprendre comment celle-ci pouvait être générée. Dans un premier temps, le transcriptome de 112 sarcomes à « génétique complexe » a été analysé. La recherche et la validation de transcrits chimériques a conduit l’identification de réarrangements fréquents au niveau du gènes TRIO. Ces transcrits permettent la formation soit d’une protéine tronquée et seraient des évènements issus du réarrangement global du génome de ces tumeurs. Dans un deuxième temps, nous avons alors recherché l’origine de la formation de ces altérations, en s’intéressant particulièrement à la fusion cellulaire comme mécanisme initiateur. Ce processus physiologique est observé dans des cellules mésenchymateuses comme les macrophages et les myoblastes et peut être détourné afin de permettre le développement et l’évolution tumorale. J’ai alors étudié les conséquences génomiques et phénotypiques de la fusion de fibroblastes à différents stades d’immortalisation ou à différentes phases du cycle cellulaire. Mes travaux ont alors permis de montrer que des mécanismes de fusion cellulaire conduisent à la formation d’altérations génétiques similaires à celles des sarcomes à « génétique complexe » et contribueraient à l’initiation et à la progression de ces tumeurs. / Sarcomas with a complex genetics are rare tumours from mesenchymal tissue. They are characterized by massive chromosomal without any recurrent and specific alteration. The objective of my thesis was to identify the consequences of this chromosomal complexity and mechanisms explaining how this could be generated. First, transcriptome of 112 sarcomas with a complex genetics have been analysed. Chimeric transcripts detection and validation permitted the identification of frequent rearrangements in TRIO gene. These transcripts lead to the formation of a truncated protein and they would originate from a global rearrangement of the tumour genomes. Second, we have sought the origin of these alterations, with a particular interest for the cell fusion as an initiator mechanism. This physiological process is observed in mesenchymal cells like macrophages and myoblasts and it can be hijacked to drive tumour inception and evolution. I consequently studied both genomic and phenotypic consequences of hybrids from fibroblasts at different immortalization steps or in the different cell cycle phases. This work permitted to demonstrate that cell fusion mechanism leads to the initiation of genetic alterations that mimics the ones in sarcomas with complex genetics and would contribute to their tumour initiation and progression.

No description available.

Soft tissue sarcomas (STS), a group of rare malignant tumours with high tissue heterogeneity, still lack effective clinical stratification and prognostic models. Therefore, we conducted this study to establish a reliable prognostic gene signature. Using 189 STS patients’ data from The Cancer Genome Atlas database, a four-gene signature including DHRS3, JRK, TARDBP and TTC3 was established. A risk score based on this gene signature was able to divide STS patients into a low-risk and a high-risk group. The latter had significantly worse overall survival (OS) and relapse free survival (RFS), and Cox regression analyses showed that the risk score is an independent prognostic factor. Nomograms containing the four-gene signature have also been established and have been verified through calibration curves. In addition, the predictive ability of this four-gene signature for STS metastasis free survival was verified in an independent cohort (309 STS patients from the Gene Expression Omnibus database). Finally, Gene Set Enrichment Analysis indicated that the four-gene signature may be related to some pathways associated with tumorigenesis, growth, and metastasis. In conclusion, our study establishes a novel four-gene signature and clinically feasible nomograms to predict the OS and RFS. This can help personalized treatment decisions, long-term patient management, and possible future development of targeted therapy.

Histotripsy is a non-thermal, non-invasive focused ultrasound therapy using controlled acoustic cavitation to mechanically disintegrate tissue into an acellular homogenate. Histotripsy applies microsecond-length, high pressure (> 10 MPa) pulses to initiate the rapid expansion and collapse of nuclei in a millimeter-scale focal region, applying large stresses and strains to targeted tissues. The cavitation "bubble cloud" generated during histotripsy treatment can be visualized in real time on ultrasound imaging, assisting with treatment guidance and monitoring. Past studies have demonstrated histotripsy's potential for a variety of applications, but histotripsy has not yet been investigated for superficial musculoskeletal tumor ablation. Additionally, preliminary investigations using histotripsy to ablate brain tumors are underway, but require advanced histotripsy devices capable of overcoming attenuation of the therapeutic ultrasound signal by the skull and rely on MRI for real-time guidance. As a result, open questions remain regarding ultrasound-guided histotripsy for brain tumors. Early evidence also suggests that histotripsy ablation may induce immunogenic changes in the tumor microenvironment. Continued research is needed to explain and corroborate these findings under conditions more immunologically representative of human cancers, such as in large animal models with spontaneous tumors. This dissertation investigates the safety and feasibility of using ultrasound-guided histotripsy to ablate superficial soft tissue sarcomas (STS), osteosarcomas (OS), and brain tumors and considers the immunological impacts of histotripsy treatment for STS and OS. The research described herein (1) investigates the ability of histotripsy to treat superficial STS tumors in companion animals with spontaneous tumors, (2) investigates the feasibility of treating bone tumors with histotripsy through a series of ex vivo and in vivo studies, and (3) applies histotripsy for the minimally invasive treatment of superficial brain tumors. The completion of this dissertation will provide significant insight into the ability of ultrasound-guided histotripsy to treat novel tumor types (i.e., STS, OS, and brain tumors) and the potential role of histotripsy in veterinary medicine. Future work will build upon the studies detailed in this dissertation to optimize ultrasound-guided histotripsy for the treatment of complete STS, OS, and brain tumors in veterinary and human patients. / Doctor of Philosophy / Histotripsy is a non-invasive focused ultrasound therapy that mechanically breaks down targeted tissues through acoustic cavitation. Histotripsy is currently being developed for a number of clinical applications, including tumor ablation, but its potential for treating many cancer types remains unknown. Histotripsy uses very short, high pressure ultrasound pulses to initiate the nucleation of bubbles in the target region. These bubbles then expand and rapidly collapse to impart large stresses and strains on surrounding tissues, leaving behind only acellular debris. The cavitation "bubble cloud" generated during histotripsy treatment can be visualized on ultrasound imaging, offering real-time treatment guidance and monitoring. Histotripsy has not yet been investigated for superficial musculoskeletal tumor ablation, and preliminary studies using histotripsy to ablate brain tumors are underway, but require advanced histotripsy devices still under development. As a result, open questions remain regarding histotripsy ablation as a treatment for musculoskeletal and brain tumors. Additionally, early evidence suggests that histotripsy ablation may be able to stimulate an immune response, treating not only the targeted tumor but also multifocal or metastatic disease. Continued research is needed to explain and corroborate these findings under conditions more similar to human cancers, such as in large animal models with naturally-occurring tumors. This dissertation investigates the safety and feasibility of using ultrasound-guided histotripsy to ablate superficial soft tissue sarcomas (STS), osteosarcomas (OS), and brain tumors and considers the immunological impacts of histotripsy treatment for STS and OS. This research (1) investigates the ability of histotripsy to treat superficial STS tumors in companion animals with spontaneous tumors, (2) investigates the feasibility of treating bone tumors with histotripsy through a series of ex vivo and in vivo studies, and (3) applies histotripsy for the minimally invasive treatment of superficial brain tumors. The completion of this dissertation will provide significant insight into the ability of ultrasound-guided histotripsy to treat novel tumor types (i.e., STS, OS, and brain tumors) and the potential role of histotripsy in veterinary medicine. Future work will build upon the studies detailed in this dissertation to optimize ultrasound-guided histotripsy for the treatment of complete STS, OS, and brain tumors in veterinary and human patients.

Os sarcomas cutâneos primários são tumores raros e de grande heterogeniedade histológica. Com a evolução da oncologia cutânea e da cirurgia dermatológica, os dermatologistas têm sido cada vez mais requisitados para diagnóstico e orientação terapêutica de tumores menos freqüentes. Entretanto são escassos os estudos sobre o tema, sobretudo na literatura nacional. O presente trabalho apresenta como objetivos estudar casos diagnosticados como sarcoma cutâneo primário pelo Laboratório de Dermatopatologia da Divisão de Dermatologia do Hospital das Clínicas da Faculdade de Medicina da Universidade de São Paulo no período de 1992 a 2002. Os casos levantados foram revisados histologicamente, selecionando 65 casos que foram classificados em subtipos histológicos. Foi realizado revisão de prontuários médicos e estudadas as características demográficas, clínicas, evolutivas, histológicas e imuno-histoquímicas. O sarcoma de Káposi foi excluído deste estudo por possuir características epidemiológicas e etiopatogênicas específicas. Dos 65 casos, 34 foram de dermatofibrossarcoma protuberans (DFSP), 10 angiossarcomas, cinco sarcomas epitelióides, quatro fibroxantomas atípicos, três leiomiossarcomas, três mixofibrossarcomas, dois sarcomas pleomórficos, um fibrohistiocitoma maligno, um lipossarcoma, um rabdomiossarcoma, um fibrossarcoma. A análise dos resultados permitiu avaliar o perfil epidemiológico, clínico, anatomopatológico e imuno-histoquímico dos casos, bem como os tratamentos empregados e evolução dos pacientes. Os achados epidemiológicos deste estudo não diferiram significativamente da bibliografia consultada, demonstrando tratar-se de tumores raros representando cerca de um caso para cada 1000 biópsias neste serviço no mesmo período. Quanto a distribuição por idade e sexo os dados foram superponíveis à literatura com exceção feita ao angiossarcoma que mostrou-se mais freqüente no sexo feminino. A cirurgia micrográfica mostrou ser o melhor método para abordagem terapêutica do DFSP. Os casos de angiossarcoma e sarcoma epitelióide apresentaram pior prognóstico. / Soft tissue tumours represent a heterogeneous group of mesenchymal and neural lesions. The cutaneous presentation of these tumours is rare. With the evolution of dermatologic surgery and cutaneous oncology, dermatologists have emerged as the primary physicians for skin cancers management. The lack of epidemiological data about this topic in the brazilian population guided us to present this study. Our goal was to systematically review cases of primary cutaneous sarcomas diagnosed at the Dermatophatology laboratory of the Dermatology division of Hospital das Clínicas of São Paulo from January 1992 to December 2002. After a thorough chart review we could retrieve demographic and clinical data, histopathological and immunohistochemical characteristics, in addition to the type of treatment, response to treatment and follow up from each case studied. Kapos\'s sarcoma due to its peculiar characteristics was not included in this study. A total of 65 cases of primary cutaneous sarcoma were included. In respect to its pathological characterization 34 cases were diagnosed dermatofibrosarcoma protuberans (DFSP), 10 angiosarcoma, five epithelioid sarcoma, four atipical fibroxanthoma, tree leiomyosarcoma, tree myxofibrosarcoma, two pleomorfic sarcoma, one malignant fibrohistiocytoma, one liposarcoma, one rabdomyossarcoma, one fibrossarcoma. Our findings were in agreement with international published data available after a medline search. In summary, sarcomas with primary cutaneous presentation are rare tumors with an incidence of 0.1% from all the pathology slides received in our service during this period. Angiosarcoma and epithelioid sarcomas had the worse prognosis and micrographic surgery was the best treatment for the DFSP.

Os sarcomas cutâneos primários são tumores raros e de grande heterogeniedade histológica. Com a evolução da oncologia cutânea e da cirurgia dermatológica, os dermatologistas têm sido cada vez mais requisitados para diagnóstico e orientação terapêutica de tumores menos freqüentes. Entretanto são escassos os estudos sobre o tema, sobretudo na literatura nacional. O presente trabalho apresenta como objetivos estudar casos diagnosticados como sarcoma cutâneo primário pelo Laboratório de Dermatopatologia da Divisão de Dermatologia do Hospital das Clínicas da Faculdade de Medicina da Universidade de São Paulo no período de 1992 a 2002. Os casos levantados foram revisados histologicamente, selecionando 65 casos que foram classificados em subtipos histológicos. Foi realizado revisão de prontuários médicos e estudadas as características demográficas, clínicas, evolutivas, histológicas e imuno-histoquímicas. O sarcoma de Káposi foi excluído deste estudo por possuir características epidemiológicas e etiopatogênicas específicas. Dos 65 casos, 34 foram de dermatofibrossarcoma protuberans (DFSP), 10 angiossarcomas, cinco sarcomas epitelióides, quatro fibroxantomas atípicos, três leiomiossarcomas, três mixofibrossarcomas, dois sarcomas pleomórficos, um fibrohistiocitoma maligno, um lipossarcoma, um rabdomiossarcoma, um fibrossarcoma. A análise dos resultados permitiu avaliar o perfil epidemiológico, clínico, anatomopatológico e imuno-histoquímico dos casos, bem como os tratamentos empregados e evolução dos pacientes. Os achados epidemiológicos deste estudo não diferiram significativamente da bibliografia consultada, demonstrando tratar-se de tumores raros representando cerca de um caso para cada 1000 biópsias neste serviço no mesmo período. Quanto a distribuição por idade e sexo os dados foram superponíveis à literatura com exceção feita ao angiossarcoma que mostrou-se mais freqüente no sexo feminino. A cirurgia micrográfica mostrou ser o melhor método para abordagem terapêutica do DFSP. Os casos de angiossarcoma e sarcoma epitelióide apresentaram pior prognóstico. / Soft tissue tumours represent a heterogeneous group of mesenchymal and neural lesions. The cutaneous presentation of these tumours is rare. With the evolution of dermatologic surgery and cutaneous oncology, dermatologists have emerged as the primary physicians for skin cancers management. The lack of epidemiological data about this topic in the brazilian population guided us to present this study. Our goal was to systematically review cases of primary cutaneous sarcomas diagnosed at the Dermatophatology laboratory of the Dermatology division of Hospital das Clínicas of São Paulo from January 1992 to December 2002. After a thorough chart review we could retrieve demographic and clinical data, histopathological and immunohistochemical characteristics, in addition to the type of treatment, response to treatment and follow up from each case studied. Kapos\'s sarcoma due to its peculiar characteristics was not included in this study. A total of 65 cases of primary cutaneous sarcoma were included. In respect to its pathological characterization 34 cases were diagnosed dermatofibrosarcoma protuberans (DFSP), 10 angiosarcoma, five epithelioid sarcoma, four atipical fibroxanthoma, tree leiomyosarcoma, tree myxofibrosarcoma, two pleomorfic sarcoma, one malignant fibrohistiocytoma, one liposarcoma, one rabdomyossarcoma, one fibrossarcoma. Our findings were in agreement with international published data available after a medline search. In summary, sarcomas with primary cutaneous presentation are rare tumors with an incidence of 0.1% from all the pathology slides received in our service during this period. Angiosarcoma and epithelioid sarcomas had the worse prognosis and micrographic surgery was the best treatment for the DFSP.

Les sarcomes sont des tumeurs malignes des tissus conjonctifs, représentant moins de 1%des tumeurs malignes de l’adulte, mais près de 8% de l’ensemble des cancers pédiatriques. Enraison de leur rareté, de leur grande variété histologique et de leur potentiel évolutifhétérogène, les sarcomes sont des pathologies difficiles à traiter, tant sur le plan diagnostique,pronostique que thérapeutique. Ces dernières années, l’avènement de techniques d’analyse pangénomiques par biologie moléculaire a permis d’améliorer la prise en charge clinique des sarcomes, mais les microARN sont des biomarqueurs émergents encore peu utilisés. au cours de c e travail de thèse, nous avons cjhoisi d'étudier la valeur des profils d'expression des micrfoARN dans les rhabdomyosarcomes et les ostéosarcomes. Les données brutes des profils d'expression ont été obtenues à l'aidre d'une technologie à moyen débit basée sur des réactions de PCR quantitative. Nous avons tout d'abord développé une méthodologie d'ananlyse permettant d'obtenir des données d'expression précises, reproductibles et à forte valeur ajoutée, à partir de matériel biologique hétérogène.. Dans un second temps, nous avons montré que les profils d'expression de microARN permettent d'améliorer la prise en charge clinique des deuc types de sarcomes étudiés : il est possible d'affiner la classification nosologique des rhabdomyosarcomes, et de prédire la réponse des ostéosarcomes à la chimiothérapie néo-adjuvante. La recherche de nouvelles applications cliniques liées aux profils d'expression des micorARN doit donc être poursuivie, et peut désormais l'être grâce à l'outil robuste que nous avons développé au cours de cette thèse. / Sarcomas are malignant soft tissue tumors, accounting for 1% of adult tumors and 8% of all pediatric malignancies. Sarcomas are rare, and display a variety of histological subtypes and clinical characteristics. Therefore, everyday management is difficult in terms of diagnosis,prognosis and treatment. Recently, the development of pangenomic molecular techniquesimproved the clinical management of sarcomas, but the use of microRNAs as biomarkers is still being investigated.In the present work, we studied the value of microRNA expression profiles inrhabdomyosarcomas and osteosarcomas. Raw data of expression profiles were obtained using amedium throughput technology based on quantitative PCR. We first developed an analysismethodology to gain accurate, reproducible and relevant expression data, starting fromheterogeneous samples. Furthermore, we showed that microRNA expression profiles canimprove the clinical management of both sarcoma entities: they are helpful to upgrade the fine nosological classification of rhabdomyosarcomas, and they are able to predict the response of osteosarcomas to neoadjuvant chemotherapy. Searching for new clinical applications tomicroRNA expression profiles must be pursued.