Les prions sont des agrégats amyloïdes infectieux. Le prion [Het-s] de Podospora anserina est un des prions le mieux caractérisé. Le prion [Het-s] est impliqué dans l’incompatibilité végétative – un processus biologique qui a lieu au cours des anastomoses entre des souches génétiquement différentes. Quand une souche [Het-s] fusionne avec une souche exprimant l’allèle alternatif du gène het-s – l’allèle het-S – une réaction de mort cellulaire programmée est déclenchée. Les deux protéines diffèrent de 13 acides aminés et partagent une architecture en deux domaines ; un domaine globulaire en N-terminal nommé HeLo et un domaine PFD (Prion Forming Domain) en C-terminal. Il a été établi qu’en présence des fibres amyloïdes de [Het-s], la protéine HET-S agit en ‘pore-forming’ toxine : la transconformation du PFD de HET-S par les fibres amyloïdes du [Het-s] active le domaine HeLo de HET-S et entraîne la mort cellulaire. Afin de mieux caractériser les propriétés du repliement β-solénoïde du prion [Het-s], nous avons entrepris l’exploration in vivo des relations structure-fonction de ce repliement par une approche d’alanine scanning. Au cours de nos recherches pour des homologues de HET-S/s, nous avons identifié un partenaire fonctionnel de HET-S – une protéine appelée NWD2. NWD2 est une protéine STAND et partage une séquence homologue (3-23) au PFD de HET-S/s. Les protéines STAND, après la reconnaissance d’un ligand, forment des plateformes oligomériques pour transduire le signal. Des analyses génomiques in silico réalisées dans plusieurs génomes fongiques nous ont amené à proposer que la transduction du signal via une protéine STAND à repliement amyloïde est un mécanisme ancien et conservé chez les champignons. Dans ce contexte nous avons identifié deux nouveaux motifs PFD putatifs – σ et PP. En soumettant à l’épreuve notre hypothèse, nous avons d’abord démontré que NWD2 interagit avec HET-S/s en fonction d’un ligand spécifique in vivo et l’interaction est dépendante de la séquence NWD2(3-23) homologue au PFD de HET-S/s. Nous avons ensuite exploré le motif PP associé à un domaine HeLo-like (HELL) dans le génome de Chaetomium globosum. En démontrant la nature amyloïde et prion-like du motif PP ainsi que l’analogie fonctionnelle entre ce motif et le PFD de HET-S/s in vivo nous avons apporté des arguments supplémentaires en faveur de l’implication des repliements amyloïdes dans la transduction du signal chez les champignons filamenteux. / Prions are infectious amyloid aggregates. Podospora anserina’s [Het-s] is one of the best characterized fungal prions with a remarkably high prevalence in wild populations. [Het-s] functions in vegetative incompatibility - a biological process occurring during anastomosis between two genetically incompatible strains. When an [Het-s] prion infected strain fuses with a strain expressing the alternative allelic variant of the het-s locus – het-S – a cell death reaction of the heterokaryon occurs. Differing by 13 amino acids both proteins shares two domain architecture; a globular N-terminal domain called HeLo and a C-terminal Prion Forming Domain (PFD). It has been demonstrated that in presence of [Het-s] amyloid fibers HET-S turns into a pore-forming toxin: transconformation of the HET-S PFD by [Het-s] fibers triggers the refolding of the HET-S HeLo domain, inducing the cell death reaction. In an attempt to better characterize the conserved features of the [Het-s] β-solenoid fold we have used a mutational alanine scanning approach and explored in vivo the existing relations between structure and prion functions of [Het-s]. During our quest for new distant homologues of HET-S/s, we have identified a functional partner of HET-S toxin called NWD2. NWD2 is a STAND protein and shares a homology sequence (3-23) in the HET-S/s PFD. STAND proteins form signal transducing hubs through oligomerization upon ligand recognition. Several in silico analysis in various fungal genomes led us to propose that signal transduction via a STAND protein using an amyloid prion-like fold is a general widespread mechanism in fungi. In that context, we have proposed two novel putative PFD motifs called σ and PP. Testing experimentally our hypothesis, we have first demonstrated that NWD2 interacts with HET-S/s upon ligand recognition in vivo and the interaction is dependant of the NWD2(3-23) region. We have then explored the newly identified putative prion domain PP, associated to a Helo-like domain (termed HELL) from the filamentous fungus Chaetomium globosum. By demonstrating the amyloid, prion-like nature of the PP motif and the functional analogy between PP and HET-S/s PFD domain in vivo, we expose further evidences supporting the implication of amyloid folds in signal transduction in filamentous fungi.

Hemoproteins represent very important components of many living organisms. Participation in the processes of oxygen transport and storage, electron transport or enzymatic catalysis of reactions involving oxygen or hydrogen peroxide are commonly known functions of hemoproteins. Recently, there has been discovered a new group of hemoproteins. The main feature of this new group of proteins is their ability to detect changes in heme concentration (heme-responsive proteins) or changes in diatomic gas concentration (gas-responsive heme-containing sensor proteins) in their vicinity. Detection of these concentration changes generates signals that induce structural changes of the respective sensor proteins. Finally, the structural changes of the respective sensor proteins affect their functions or activities. The subject of this diploma thesis is the preparation and characterization of the eukaryotic heme sensor Bach1. We especially focused on the ability of Bach1 to bind heme molecules and on the comparison of various Bach1 properties in its apoform and holoform. Determination of the exact amount of heme molecules that specifically interact with heme sensor Bach1 represents very important part of this thesis. We also studied the effect of different redox states of heme iron and the presence of interaction...

Phospholipase Cβ (PLCβ) cleaves phosphatidylinositol-4,5-bisphosphate (PIP₂) into the second messengers inositol-1,4,5-triphosphate (IP₃) and diacylglycerol (DAG). IP₃ increases intracellular Ca²⁺, while DAG remains in the membrane, and together with increased Ca²⁺, activates protein kinase C (PKC). PLCβ has low basal activity but is activated following stimulation of G_i- and G_q-coupled receptors through direct interactions with Gα_q and Gβγ. PLCβ is essential for normal cardiomyocyte and vascular smooth muscle function and regulates cell proliferation, survival, migration, and differentiation. However, increased PLCβ activity and expression results in arrhythmias, hypertrophy, and heart failure. PLCβ must interact with the cell membrane for its activity. While heterotrimeric G proteins stimulate PLCβ, they are insufficient for full activation, suggesting the membrane itself contributes to increased lipid hydrolysis, potentially via interfacial activation. However, how the composition of the membrane and its resulting properties, such as surface charge, contribute to adsorption and interfacial activation is not well-established. Furthermore, whether or how interfacial activation also impacts other regulatory elements in PLCβ and Gα_q-dependent activation is unknown. Using an innovative combination of atomic force microscopy on compressed lipid monolayers and biochemical assays, we are beginning to understand how the membrane itself, PLCβ autoinhibitory elements and Gα_q regulate PLCβ activation. These studies provide the first structure-based approach to understanding how the cell membrane regulates the activity of this essential effector enzyme.

The zinc finger associated domain (ZAD) family of transcription factors from Drosophila melanogaster is not well described in the literature, in part because it is very difficult to study by traditional mutagenesis screens. Bioinformatic studies indicate this is due to overlapping functions remaining after a recent evolutionary divergence. I set out to use in vitro-binding techniques to identify the characteristics of the ZAD family and test this theory. I have constructed glutathione S-transferase (GST)-ZAD domain chimeric proteins for use in pull down protein binding assays,and GST-Zinc finger (ZnF) array domain chimera for electrophoretic mobility shift assays (EMSA). Protein binding assays indicated two putative conserved interactors, similar to the analogous KRAB system in mammals. ... Competitive bindings were carried out to show a specificity of binding conferred by the identified conserved positions. While the consensus binding sites show relatively few similarities, the predicted target genes identified by the consensus binding sites show significant overlap. The nature of this overlap conforms to the known characteristics of the ZAD family but points to a more positive selection to maintain conservation of function. / by Joseph Krystel. / Thesis (Ph.D.)--Florida Atlantic University, 2012. / Includes bibliography. / Mode of access: World Wide Web. / System requirements: Adobe Reader.

Drosophila melanogaster encounter periods of increased temperature or decreased oxygen in its native environment. One consequence of these environmental stresses is increased production of reactive oxygen species that damage major molecules within cells. Another consequence is that flies fall into a protective coma where biological functions are minimized to conserve energy expenditures. This biological phenomenon is called spreading depression. The overarching aim of this project is to determine if methionine sulfoxide reductases affect entrance or exit from the protective coma induced by acute thermal stress. The data revealed that complete deficiency of Msr in young flies causes a faster induction of the coma. In both young and old flies, Msr does not affect average recovery time but does affect the pattern of recovery from coma. Entrance into the coma is age dependent with young flies maintaining activity longer than before entering into the coma as compared to old flies. / by Karin Schey. / Thesis (M.S.)--Florida Atlantic University, 2012. / Includes bibliography. / Mode of access: World Wide Web. / System requirements: Adobe Reader.

Mitochondrial disorders resulting from defects in oxidative phosphorylation are the most common form of inherited metabolic disease. Mutations in the human mitochondrial translation elongation factor GFM1 have recently been shown to cause the lethal pediatric disorder Combined Oxidative Phosphorylation Deficiency Syndrome (COXPD1). Children harboring mutations in GFM1 exhibit severe developmental, metabolic and neurological abnormalities. This work describes the identification and extensive characterization of the first known mutations in iconoclast (ico), the Drosophila orthologue of GFM1. Expression of human GFM1 can rescue ico null mutants, demonstrating functional conservation between the human and fly proteins. While point mutations in ico result in developmental defects and death during embryogenesis, animals null for ico survive until the second or third instar larval stage. These results indicate that in addition to loss-of-function consequences, point mutations in ico appear to produce toxic proteins with antimorphic or neomorphic effects. Consistent with this hypothesis, transgenic expression of a mutant ICO protein is lethal when expressed during development and inhibits growth when expressed in wing discs. In addition, animals with a single copy of an ico point mutation are more sensitive to acute hyperthermic or hypoxic stress. Removal of the positively-charged tail of the protein abolishes the toxic effects of mutant ICO, demonstrating that this domain is necessary for the harmful gain-of-function phenotypes observed in ico point mutants. / Further, expression of GFP-tagged constructs indicates that the C-terminal tail enhances ectopic nuclear localization of mutant ICO, suggesting that mislocalization of the protein may play a role in the antimorphic effects of mutant ICO. Taken together, these results illustrate that in addition to loss-of-function effects, gain-of-function effects can contribute significantly to the pathology caused by mutation in mitochondrial translation elongation factors. / by Catherine F. Trivigno. / Thesis (Ph.D.)--Florida Atlantic University, 2010. / Includes bibliography. / Electronic reproduction. Boca Raton, Fla., 2010. Mode of access: World Wide Web.

A colina quinase, 1ª enzima de uma via que forma 45% da membrana de P. falciparum foi clonada, expressa e purificada, e um anticorpo policlonal desenvolvido. Estudos de transporte da enzima demonstraram que a PfChok é transportada para o citossol por uma via independente do inibidor Brefeldina A. Obteve-se informação da estrutura secundária e uma modelagem da estrutura terciária da proteína, tendo sido localizados sítios de fosforilação para proteínas quinases. Através de uma nova abordagem em genômica funcional de Plasmodium, o gene da proteína adaptadora PfRACK foi códon otimizado e inserido em células de mamíferos. Estudos de dinâmica de Ca2+ em microscopia confocal indicaram que sua sinalização nas células estudadas é inibida na presença de PfRACK, dependente da interação direta com receptores de IP3. A enzima localiza-se distintivamente em relação à RACK1 endógena. Nossos resultados abrem a possibilidade de novos estudos, ao estabelecer a transfecção de genes do parasita para estudos de mecanismos de transdução de sinal na interação Plasmodium-hospedeiro. / Choline Kinase, the first enzyme of a pathway responsible for up to 45% of Plasmodium falciparum parasite membrane, was cloned, expressed and purified, and a policlonal antibody was developed to follow its localization along the intraerythrocytic cycle. The enzyme is transported to parasite´s cytosol, through a pathway independent of the Endoplasmic Reticulum to Golgi apparatus. Information about the secondary structure was obtained, as well a model of the tertiary structure, where several kinases phosphorylation sites were identified. The PfRACK gene was codon-optimized and transfected in mammalian cells. Dynamic Ca2+ studies by confocal microscope have revealed that Ca2+ signaling of the transfected cells was inhibited by PfRACK, dependent on direct interaction with InsP3 receptors. The protein co-localizes distinctly of the endogenous RACK1. Our results open new possibilities of malaria functional genomics, by establishing the transfection of parasites genes into mammalian cells with the aim to study transduction signals mechanisms of the Plasmodium-host interaction.

Células Y-1 apresentam o gene K-ras amplificado, o que resulta em altos níveis de expressão da proteína codificada por este gene. Este fato faz com que células Y-1 apresentem níveis cronicamente altos de K-Ras-GTP. Além disso, estas células apresentam uma relativa desregulação da transição G0→Gl→S, a qual é caracterizada por uma porcentagem de células entrando na fase S do ciclo celular na condição carenciada; e também, por um afrouxamento na regulação de Myc, o qual apresenta níveis basais significantes de mRNA e proteína. Para verificar se existe uma relação entre K-Ras-GTP elevado e os níveis basais de Myc e a desregulação na transição G0→Gl→S, células Y-1 foram transfectadas com uma forma dominante negativa de H-ras, H-ras Asn-17 (RasN 17). Os transfectantes resultantes também foram utilizados para verificar o papel de Ras na transdução do sinal iniciado por FGF-2 e ACTH. Com estes clones foi possível verificar uma redução nos níveis de ativação de K-Ras na condição carenciada, e com isso ficou claro que FGF-2 e ACTH são capazes de induzir a ativação de K-Ras, porém com cinética diferentes: uma ativação tardia e lenta para FGF-2, e rápida e transiente para ACTH. Com a redução nos níveis de Ras-GTP, verificamos uma concomitante redução no basal da proteína c-Myc e também no basal de entrada em S, indicando que existe uma correlação entre estes fatores. Além disso, os clones Yl-RasN17 foram determinantes para mostrar que em células Y-1 a presença de Akt/PKB constitutivamente ativada é conseqüência dos níveis cronicamente elevados de K-Ras-GTP (Forti et al, 2002). / Abstract not available.

Demonstramos que o P. falciparum dentro do eritrócito é capaz de usar a via de sinalização celular dependente do inositol trifosfato (IP3). Investigamos os estoques de Ca2+ intracelular sensíveis ao IP3 neste parasita e a sensibilidade ao IP3 em diferentes estágios no ciclo intraeritrocítico. Demonstramos que o hormônio melatonina é capaz de aumentar a concentração de IP3 neste parasita. Com o uso de uma coluna de afinidade ao IP3 tentamos encontrar proteínas candidatas ao receptor de IP3 em P. falciparum. Este trabalho também estuda a enzima heme oxigenade de P. falciparum (PfHO). Testamos a capacidade desta enzima em converter biliverdina (BV) em bilirubina (BR), a modulação desta atividade na presença de diversas metaloprotoporfirinas e o potencial destes compostos como antimaláricos. Reportamos que a biliverdina é capaz de modular o ciclo intraeritrocítico de P. falciparum e apresentamos a proteína enolase de P. falciparum como candidato ao sensor de BV neste parasita. / We demonstrate that P. falciparum within the erythrocyte is able to use the cellular signaling pathway dependent on inositol triphosphate (IP3). We investigated the intracellular Ca2+ stores sensitive to IP3 and explore parasite sensitivity to IP3 at different stages in the intraerythrocytic cycle. We demonstrate that melatonin hormone is capable of increasing the IP3 concentration on this parasite. Using an IP3 affinity column, we tried to find candidate proteins for IP3 receptor in P. falciparum. This work also studies the enzyme P. falciparum heme oxygenase (PfHO). We tested the ability of this enzyme to convert biliverdin (BV) in bilirubin (BR), the modulation of this activity in the presence of various metalloprotoporphyrins and the potential of these compounds as antimalarials. We reported that biliverdin is capable of modulating the intraerythrocytic cycle of P. falciparum and present P. falciparum enolase as candidate for BV sensor on this parasite.

Longitudinals lacking gene (LOLA) is a transcription factor that is involved in a variety of axon guidance decisions in Drosophila melanogaster nervous system. Besides having a role as an epigenetic silencer and in the programmed cell death in Drosophila's ovary, this gene is also an example of complex transcription unit. LOLA is a transcription repressor and can generate 17 DNA - binding isoforms, through alternative splicing, each containing distinct zinc-finger proteins. This unique DNAbinding binding sequence to which LOLA-ZFP binds has been determined for four of the lola isoforms F, J, P and K. Also, bioinformatics' tool approach has been taken to identify the target genes that are regulated by these four LOLA splice variants. Future work will be done for the five other LOLA isoforms to categorize their putative DNA-binding sequences and subsequently their protein interactions. / by Bazila Qureshi. / Thesis (M.S.)--Florida Atlantic University, 2010. / Includes bibliography. / Electronic reproduction. Boca Raton, Fla., 2010. Mode of access: World Wide Web.