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Current usage of human embryonic stem cells (hES) and induced pluripotent stem cells (iPS) in clinical therapies and personalized medicine are limited as a result of ethical, technical and medical problems that arise from isolation and generation of these cells. Isolation of hES cells faces ethical problems associated with their derivation from human pre-implantation embryos. The most controversial aspect of hES cell isolation targets the generation of autologous hES cell lines which requires the transfer of a somatic-cell nucleus from the patient to an enucleated oocyte. While already established embryonic stem cell lines from IVF embryos can be used in a similar manner, lack of genetic identity can cause therapy rejection from the host, and prevent their use in personalized medicine. Induced pluripotent stem cells on the other hand, are generated from somatic cells that have been reprogrammed in vitro to behave like stem cells. While these cells can potentially be used for personalized medicine without the risk of rejection by the host system, derivation methods prevent their therapeutic use. The most efficient method used to generate iPS cells involves usage of viral particles which can result in viral DNA being integrated in the host cell’s genome and render these cells non-compliant for clinical therapies. Other methods not involving viral particles exist as well, but the reprogramming efficiency is too low and technical problems with generating large enough numbers of cells prevent these methods from being feasible approaches for clinical therapies. Direct reprogramming of a differentiated cell into a developmentally more plastic cell would offer alternatives to applications in regenerative medicine that currently depend on either embryonic stem cells (ES), adult stem cells or iPS cells. We hypothesize that Xenopus laevis egg cytoplasmic extract contains critical factors needed for reprogramming that may allow for non-viral, chemically defined derivation of human induced pluripotent/multipotent cells which can be maintained by addition of exogenous FGF2. In this thesis we investigated a new method for generation of multipotent cells through determining the ability of select fractions of Xenopus laevis egg extract to induce multipotency in already differentiated cells. We were able to identify select fractions from the extract that in combination with exogenously added FGF2 can reprogram and maintain the reprogrammed cells in an undifferentiated state. The findings of this work also determined that Xenopus laevis egg extract mRNA is required for achieving full reprogramming. The body of work presented in this thesis showed the ability of FGF2 isoforms to bind and activate select FGF receptor tyrosine kinases, act as extracellular mitogenic factors to support growth of hES cells in an undifferentiated state as well bind to nuclear DNA and affect expression of endogenous genes. Moreover, we showed that all FGF2 isoforms can induce expression of stem cell specific proteins in human dermal fibroblasts as well as extend lifespan of human dermal fibroblasts in vitro. In this work we identified HECW1, the gene coding for E3 ubiquitin ligase NEDL1, as a novel nuclear target for all FGF2 isoforms and showed that overexpression of recombinant FGF2 isoforms in human dermal fibroblasts can down regulate expression of HECW1 gene.

O arroz é um dos cereais mais produzidos e consumidos no mundo, cultivado em aproximadamente 156 milhões de hectares, com uma produção mundial de mais de 600 milhões de toneladas por ano. O arroz é, hoje, alimento básico para mais de dois terços da população mundial. Contudo, minerais como ferro e zinco são perdidos durante o processo de beneficiamento dos grãos para comercialização. Uma vez que a deficiência de ferro afeta cerca de três bilhões de pessoas e é a deficiência mineral mais comum em humanos, diversos esforços têm sido feitos para aumentar a concentração deste mineral em grãos de arroz. Diversos projetos têm como objetivo compreender o mecanismo de translocação de nutrientes para grãos de arroz, visando o aumento de sua concentração com fins de biofortificação do alimento. Para melhor compreender a homeostase de ferro em plantas de arroz, conduzimos experimentos para analisar possíveis funções de duas proteínas. Proteínas da família NRAMP (Natural Resistance Associated Macrophage Protein) foram descritas como tendo envolvimento na homeostase de ferro em diferentes organismos. OsNRAMP7 apresenta propriedades características da família, como os motivos DPGN e MPH, possivelmente envolvidos no transporte de metais. Oócitos de Xenopus injetados com o mRNA de OsNRAMP7 apresentaram aumento significativo na concentração de ferro. A expressão heteróloga da proteína em oócitos indica o envolvimento da proteína no transporte transmembrana de ferro. Ferritina é outra proteína envolvida na homeostase de ferro nas células. Ferritinas são proteínas esféricas, capazes de armazenar ferro no seu interior, agindo também como um estoque de ferro nas células. O armazenamento de ferro dentro desta proteína pode prevenir reações que levam a produção de radicais livres e, consequentemente, estresse oxidativo. Duas cópias do gene da ferritina foram descritas em arroz. Respostas ao estresse oxidativo em uma linhagem mutante de arroz para o gene OsFER2 foram estudadas. Quando submetidas a excesso de ferro, plantas mutantes tiveram aumento na concentração de MDA (malondialdeído) nas partes aéreas e da atividade da enzima APX (ascorbato peroxidase) em raízes, revelando respostas ao dano oxidativo quando há baixa produção de ferritina. Plantas mutantes acumulam menos biomassa do que plantas WT (wild type) mesmo em condição controle de crescimento. Isso pode indicar um possível papel da ferritina na homeostase de ferro em plantas de arroz, ainda que as mesmas não estejam em estresse por excesso de ferro. Mecanismos compensatórios como o aumento da quantidade da proteína 5 frataxina e aumento do influxo de ferro para vacúolos também devem ser investigados. Mais experimentos são necessários para melhor compreensão do papel da ferritina na homeostase de ferro em arroz. Não obstante, com os experimentos aqui apresentados é possível determinar o envolvimento da proteína OsNRAMP7 na homeostase de ferro em arroz. / Rice is one of the most produced and consumed cereals in the world, cultivated in approximately 156 million hectares, with a world production of over 600 million tons. It is a staple food for two thirds of the world population. However, minerals such as iron and zinc are lost during rice processing for commercialization. Since iron deficiency affects around three billion people, and is the most common mineral deficiency in humans, several efforts have been made in order to increase this nutrient’s levels in rice grains. Several projects have as goal to understand translocation mechanisms of nutrients to rice grains as to increase their levels for biofortification purposes. To better understand iron homeostasis in rice plants, we conducted experiments in order to analyze the putative role of two proteins. The NRAMP (Natural Resistance Associated Macrophage Protein) family was described as having an important role in iron homeostasis in different organisms. OsNRAMP7 presents characteristic features of the family, as motifs DPGN and MPH, said to be involved in metal transport. Xenopus oocytes injected with OsNRAMP7 mRNA exhibited a significant increase in iron content. Heterologous expression of the protein in oocytes indicated that the protein is involved in transmembrane iron transport. Ferritin is another protein involved in intracellular iron homeostasis. Ferritins are spherical proteins capable of storing iron in their core, also acting as an iron buffer in cells. Storage of free iron inside this protein may prevent reactions that lead to the formation of oxygen radicals and, therefore, to oxidative stress. Two ferritin genes have been described in the rice genome. We studied the oxidative stress response of a mutant line of rice with impaired expression of OsFer2. When subjected to iron excess, mutant plants increased MDA (malondialdehyde) concentration in shoots and APX (ascorbate peroxidase) enzyme activity in roots, revealing oxidative damage responses when ferritin production is impaired. Mutant plants have lower weight than WT (wild type) even in control growth condition. This may indicate a possible role of ferritin in iron homeostasis in rice plants, even when they are not under iron stress. Compensative mechanisms such as increase of frataxin levels and iron influx to the vacuole should be investigated. More experiments are required for a proper understanding of ferritin role in iron homeostasis. Still, with these experiments allowed to determine the involvement of the OsNRAMP7 protein in iron homeostasis in rice.

Contrairement aux mammifères adultes, la rétine des amphibiens possède la particularité de croître durant toute la vie de l'animal grâce à l'activité continue d'une population de cellules souches localisée au sein d'une niche bien délimitée, la zone marginale ciliaire (ZMC). Ce modèle offre ainsi la possibilité d'étudier in vivo les mécanismes moléculaires à l'origine du maintien et de la prolifération des cellules souches neurales à des stades post-embryonnaires. Dans ce but, l'identification et la caractérisation des différentes voies de signalisation présentes au sein de la niche biologique des cellules souches rétiniennes est une première étape indispensable. Mon projet de thèse a été divisé en deux objectifs principaux: l'étude des interactions entre les voies Wnt et Hedgehog au sein de la ZMC chez le xénope et la réalisation de l'étude fonctionnelle de Yap, l'effecteur principal de la voie de signalisation Hippo dans ce modèle. Par des approches génétiques et pharmacologiques, la première partie de ce projet a permis de mettre en évidence un antagonisme inattendu entre les signaux Wnt et Hedgehog au sein de la ZMC qui régule l'activité proliférative des cellules souches et des progéniteurs rétiniens. Ce travail nous a conduit à proposer un modèle dans lequel ces deux voies réguleraient la balance prolifération/différenciation dans la rétine post-embryonnaire. Dans un deuxième temps, les expériences de gain et de perte de fonction du gène Yap ont montré que ce dernier joue un rôle essentiel dans la régulation du programme temporel de la phase de réplication de l'ADN des cellules souches rétiniennes. En effet, l'inhibition de Yap entraîne une importante réduction de la durée de la phase S du cycle cellulaire associée à une instabilité génomique. Une surexpression de c-Myc et de la voie p53-p21 semble impliquée dans ce phénotype. Nos travaux nous ont également permis d'identifier un nouveau partenaire de YAP, le facteur de transcription PKNOX1. L'ensemble de ces données nous a ainsi conduit à proposer un modèle selon lequel le complexe YAP/PKNOX1 pourrait être nécessaire au bon déroulement de la phase de réplication des cellules souches, indispensable à la maintenance de l'intégrité du génome de ces cellules et de leur descendance. / In contrast to the adult mammals, the retina of amphibians shows continuous growth during adulthood through active neural stem cells localized in the defined niche called ciliary marginal zone (CMZ). This model offers an exceptional tool to study in vivo the molecular mechanisms involved in the maintenance and proliferation of neural stem cells during post-embryonic stages. In this order, the identification and the characterization of the signaling pathways acting in biological retinal stem cell niche is an essential step.My PhD research was divided in two main parts: the study of the interaction between the Wnt and Hedgehog pathways within the CMZ and the functional study of Yap, the downstream effector of the Hippo pathway in this model. By using genetic and pharmacological tools, the first part of this project demonstrated an unexpected antagonism between the Wnt and the Hedgehog signaling in the CMZ that regulates proliferative activity of retinal stem and progenitor cells. In this article, we propose a model in which an antagonistic interplay of Wnt and Hedgehog pathways may regulate the balance proliferation/differentiation in the post-embryonic retina. Second, gain and loss of function experiments of Yap have shown that this factor plays a key role in the regulation of temporal replication of DNA retinal stem cells. Indeed, inhibition of Yap leads to strong reduction of the S-phase length during the cell cycle associated with genomic instability. c-Myc and p53-p21 overactivation seems to be involved in this phenotype. This work also allowed us to identify a novel YAP partner, the transcriptional factor PKNOX1. We indeed propose a model in which the YAP/PKNOX1 complex may be required for the successful convening of the replication phase on stem cells, essential for the maintenance of genome integrity on the cells and their progeny.

No description available.

No description available.

Les protéines Vestigial-like constituent une famille de cofacteurs de transcription contenant un domaine très conservé, appelé Tondu, qui permet l’interaction avec les facteurs de transcription de la famille TEAD. L’état de l’art des connaissances actuelles sur cette famille, en termes de répertoire, de structure et de fonction des gènes dans les différents groupes d’animaux, a fait l’objet d’une revue. Durant la thèse, a été étudiée la fonction de deux gènes vestigial, vestigial-like 3 et vestigial-like 4, dans le modèle amphibien xénope. Ce choix découle d’une part, des travaux antérieurs de notre laboratoire qui a caractérisé la famille des gènes vestigial chez le xénope et d’autre part des avantages de ce modèle expérimental qui permet les analyses cellulaires et moléculaires. Les approches de gain et perte de fonction indiquent que vestigial-like 3 est plus particulièrement impliqué dans la migration des cellules de la crête neurale. Vestigial-like 4 a un rôle dans la neurogenèse précoce et la formation de la crête neurale. / Vestigial-like proteins belong to a transcription co factors family with a conserved domain, called tondu, which allows their interaction with TEAD family transcription factors. The state of the art on the current knowledge about this family in terms of gene repertory, structure and functions in different animals has given rise to a review. PhD work has focused on vestigial-like 3 and vestigial-like 4 genes functions in the Xenopus amphibian. This choice stemmed from the laboratory previous works that has described vestigial like gene family in Xenopus, and from the Xenopus model advantages that allows cellular and molecular analysis. Gain and loss of function approaches indicate that vestigial-like 3 is especially implicated in neural crest cells migration. Vestigial-like 4 plays a role in early neurogenesis and neural crest formation.

Thesis (M.S. zoology)--Washington State University, December 2007. / Includes bibliographical references (p. 24-26).

De nombreuses kinases participent au bon déroulement de chaque étape du cycle cellulaire. Chez les eucaryotes supérieurs, les kinases Aurora-A et Aurora-B, structuralement très proches, exercent des rôles fondamentaux durant la mitose. Aurora-A est une protéine localisée au niveau des centrosomes, impliquée dans le cycle de division du centrosome et la formation du fuseau mitotique. Aurora-B est une protéine passagère localisée sur les centromères et qui migre, en anaphase, sur le sillon de division et se concentre en cytocinèse sur le corps résiduel. Aurora-B est responsable de la phosphorylation massive, en mitose, du résidu Serine 10 de l'histone H3. Par un système de pseudo-génétique, j'ai ciblé, dans l'extrémité amino-terminale de Aurora-A, le domaine responsable de sa localisation centrosomique. Ces expériences ont montré que les domaines catalytiques de Aurora-A et Aurora-B possèdent tous deux un signal de localisation centromérique. Mais, à l'inverse de Aurora-B, le domaine catalytique de Aurora-A ne se transfert pas des centromères vers le sillon de division en anaphase. Ces travaux montrent également que Aurora-A est capable d'assurer une partie des fonctions mitotiques de Aurora-B. J'ai par ailleurs identifié et cloné la séquence de la protéine passagère TD-60 de Xenopus laevis. J'ai exprimé des domaines protéiques de la protéine xTD60, afin de générer un anticorps spécifique de TD-60 de xénope. Des expériences de co-sédimentation de complexes protéiques d'extraits mitotiques d'œufs de xénope et des expériences d'immunolocalisation cellulaire nous permettent d'envisager pour xTD-60 des fonctions plus larges que celles attribuées aux protéines passagères.

Graduation date: 1994