<p>Intestinal microbiota are key determinants of gut homeostasis and affect various gut physiological and immune processes. Co-evolution has enabled the host and intestinal microbes to exist in a mutualistic relationship. However, interactions between the host and its intestinal microbiota exist in a delicate balance between mutualism and pathogenicity. Maintenance or disruption of this balance depends on a complex interplay between the microbiota and the host, as well as other gut luminal factors, including diet, that are poorly understood. The main goal of this thesis has been to study the host-gut luminal interactions that regulate gut physiology and immunity. In particular, <strong>Chapter 2</strong> centers on investigating the effect of perturbing the intestinal barrier using a non-steroidal inflammatory drug on host-microbial and dietary interactions in a mouse model of gluten sensitivity. I demonstrated that indomethacin-induced increase in intestinal permeability is associated with altered intestinal microbiota composition, systemic antibody development against intestinal bacteria and a shift in immune responses to the dietary antigen, gluten. <strong>Chapter 3</strong> focuses on investigating whether modulation of the intestinal microbiota can affect the host’s susceptibility to intestinal injury. I used mice with defective intracellular bacterial receptor signaling because discrimination between commensals and pathogens is, in part, achieved by a family of receptors that recognize conserved bacterial components. I demonstrated that the microbiota with which these mice are colonized influences the expression of RegIII-γ, a type of antimicrobial peptide, and susceptibility to intestinal injury. To gain further insight on the effect of microbiota on antimicrobial peptides, in <strong>Chapter 4</strong> we conducted a combination of gnotobiotic and <em>in-vitro</em> experiments where we identified that specific components of the microbiota differentially regulate RegIII expression. Further examination showed that <em>MyD88 a</em>nd <em>Ticam1 </em>genes, which are signaling adaptor proteins of pattern recognition receptors, are essential regulators of microbial–induced RegIII expression by intestinal epithelial cells. Collectively, the work presented in this thesis provides novel insight on the bi-directional interaction between the host and the gut luminal content as well as of potential beneficial effects of microbiota-modulating strategies in maintaining homeostasis and preventing disease.</p> / Doctor of Philosophy (Medical Science)

Les maladies immunitaires chroniques incluant les maladies auto-immunes et inflammatoires touchent 20 à 25% de la population des pays occidentaux. La comparaison des taux de concordance chez les jumeaux ou l’histoire familiale de sujets atteints de la maladie cœliaque (maladie auto-immune de l’intestin) ou de l’œsophagite éosinophilique (maladie inflammatoire de l’œsophage) indiquent que des facteurs génétiques et environnementaux interviennent dans la susceptibilité à ces maladies. Cependant, ces études ne distinguent pas de manière claire la prédisposition génétique selon l’hétérogénéité clinique (enfants versus adultes) ou ethnique (stratification des populations). Méthodes. Les haplotypes HLA de prédisposition à la maladie cœliaque et les polymorphismes des gènes candidats IL-13 (R130Q), IL-5 (-746 T/G) et IL-5R (-80A/G) impliqués dans la physiopathologie de l’œsophagite éosinophilique, ont été caractérisés par la technique PCR-SSP sur l’ADN génomique. Résultats: Nos études familiales et cas-contrôles réalisées chez une population Québécoises avec un fond génétique très homogène nous a permis : i) d’éviter le problème de stratification des populations, ii) de confirmer que les gènes HLA sont également associés à la maladie cœliaque (enfants et adultes) au Québec comme dans les autres populations Caucasiennes, iii) de mettre en évidence le rôle du gène IL-13 dans la prédisposition à l’œsophagite éosinophilique (garçons et filles) et d’exclure les gènes IL-5 et IL-5R comme facteurs de susceptibilité dans notre population. Conclusion: Ce travail confirme pour la première fois l’impact des gènes HLA dans la prédisposition à la maladie cœliaque et le rôle du facteur génétique dans l’œsophagite éosinophilique chez une population Canadienne Française avec un fond génétique ayant un fort effet fondateur. / Chronic immune diseases including autoimmune and inflammatory diseases affect 20 to 25% of Western country population. The higher concordance of disease in twins or in first-degree relative of patients with celiac disease (bowel autoimmune disease) or eosinophilic esophagitis (inflammatory disease of the esophagus) indicate that genetic and environmental factors are involved in susceptibility to these diseases. However, these studies do not distinguish clearly genetic predisposition according to clinical heterogeneity (children versus adults) or ethnicity (population stratification). Methods: HLA haplotypes predisposing to celiac disease and polymorphisms of candidate genes IL-13 (R130Q), IL-5 (-746 T / G) and IL-5R (-80A / G) involved in physiopathology of eosinophilic esophagitis, have been evaluated by PCR-SSP on genomic DNA. Results: Our familial and case-control studies performed in populations having a very similar genetic background with a strong founder effect, allowed us: i) to avoid the problem of population stratification, ii) to confirm that HLA genes are also associated with celiac disease in Quebec (children and adults) as in other Caucasian populations, iii) to identify the role of IL-13 gene in susceptibility to eosinophilic esophagitis (boys and girls) and to exclude IL-5 and IL-5R genes as susceptibility factor in our population. Conclusion: This study confirms for the first time the impact of HLA genes in predisposition to celiac disease and the role of genetic factors in eosinophilic esophagitis in a French Canadian population with a strong founder effect.

Cette recherche porte sur les conséquences sociales, au Québec, de la maladie cœliaque et des allergies alimentaires. Elle vise à expliquer et comprendre comment la maladie cœliaque et les allergies alimentaires influencent les relations sociales, les activités sociales et les perceptions des personnes qui vivent avec ces conditions, ainsi que celles de leurs proches. Pour ce faire, des entrevues semi-dirigées ont été effectuées auprès de 11 participants qui étaient soit cœliaque, allergique ou membre de l’entourage. Durant ces entrevues, il a été question de diagnostic, d’accidents alimentaires, d’accessibilité, d’activités amicales, de la réaction et de l’adaptation de la famille, de perceptions et de relations amoureuses. Une comparaison, entre les expériences des cœliaques et des allergiques, est réalisée suite à la description celles-ci. Les données d’entrevues ont été analysées avec le concept d’habitus de Bourdieu (1980), les concepts d’agency et de règles de Giddens (1979), les concepts d’exclusion et d’identité ainsi qu’avec les différentes définitions de la maladie et une échelle de gravité des perceptions. De cette recherche, on notera que les perceptions de la maladie sont différentes chez les cœliaques et les allergiques. La maladie cœliaque tend à être moins prise en charge par les professionnels de la santé et être considérée avec moins de sérieux, par les cœliaques et la population générale, que les allergies alimentaires. Les deux conditions amènent une modification de l’habitus et une période d’adaptation. Par contre, cet exercice semble être plus difficile et complexe pour les cœliaques que les allergiques, dû à l’âge où la condition est découverte. Dépendant de la souplesse de l’habitus individuel et de groupe, la confrontation à cette reformulation de l’habitus se produira plus ou moins bien. Dans le cas où la confrontation prend une tangente négative, il en découlera une désapprobation sociale ou un déni personnel qui mènera à l’exclusion. La littérature indique généralement que la qualité de vie des cœliaques et des allergiques diminue progressivement avec le temps, entraînant des conséquences négatives au niveau social, émotif et physique. Mes participants semblent, toutefois, bien vivre avec leur condition respective puisqu’ils profitent d’un bon support de la part de leur entourage. / This research is about the social consequences, in Québec, of the celiac disease and food allergies. Its aim is to bring an explanation and a better understanding of how celiac disease and food allergies influence the social relations, the social activities and the perceptions of the people that are living with those conditions and their close relations. With this aim in mind, semi-directed interviews were carried out with 11 participants that were either celiac, allergic or near relations. During these interviews, diagnostic, food accidents, accessibility, activities with friends, the family’s reaction and adaptation, perceptions and relationships were the main topics that were discussed. The experiences of the people living with celiac disease (CD) or food allergies (FA) were compared following their description. The data stemming from the interviews was analysed by using Bourdieu’s habitus concept (1980), Giddens’s concepts of agency and rules (1979), concepts of exclusion and identity as well as the definitions of sickness, illness and disease and a gravity scale of perceptions. From this research will be noticed that perception of illness is different for the people living with CD than those living with FA. CD tends to be taken less in charge by health professionals and to be taken with less seriousness, by people living with CD and the general population, than FA are. Both conditions lead to a modification of habitus and an adaptation phase. Nevertheless, these changes seem to be harder to deal with and more complex for people living with CD than for people living with FA because of the age period where the condition was revealed. Depending on the flexibility of the individual and group habitus, the confrontation to the recasting of habitus will go more or less well. If the confrontation is more on the negative side of the spectrum, social disapproval or personal denial will take place, leading to exclusion. The literature generally shows that the quality of life for people living with CD and FA gradually diminishes over time, bringing negative social, emotional and physical consequences. My participants, however, are apparently living well with their respective conditions because they benefit from a good support of their peers.

No description available.

Abstract The aims of this study were to investigate the clinical features, the endoscopic and histological abnormalities of ileocolonic and gastroduodenal mucosa and immunogenetic background of microscopic colitis (MC) and its subtypes collagenous colitis (CC) and lymphocytic colitis (LC). 30 patients with CC and 54 with LC were examined with different control groups used according to the study. The mean age at diagnosis was in the sixties in both CC and LC, with a female preponderance in both Autoimmune conditions such as celiac diseased (CD) were common in MC. Bronchial asthma associated with LC. Lactose intolerance associated with MC but colonic diverticulosis was rare. Ileal histological changes were common in MC. Focal gastritis did not associate with MC. Lymphocytic gastritis was found only in LC. Gastric endoscopic erosions were more prevalent in CC than in LC. The age at diagnosis of MC was higher in H. pylori positive than negative patients. The patients with MC had shorter duodenal villi than controls even when patients with CD were excluded. HLA-DR3-DQ2 haplotype and TNF2 allele carriage were more frequent in patients with MC compared to controls. The genotype GG of IL-6-174 was more prevalent in MC compared to the controls. IL-6 genotype did not associate with the serum IL-6 concentration. The concentration of IL-6 was higher in patients with CC than in LC. In conclusion, in addition to colonic typical inflammation, histological abnormalities were detected also in gastric, duodenal and ileal mucosa. CD was common in MC, but there was no association with specific types of gastritis. HLA association was found in MC. Polymorphism in the proinflammatory IL-6-174 gene displayed a possible association with MC. Although CC and LC share many clinical features, the differences in the occurrence of immune conditions, gastric abnormalities and IL-6 response point to differences in their pathogenesis. / Tiivistelmä Tutkimuksen tavoitteena oli tutkia mikroskooppisen koliitin sekä sen alaryhmien, kollageenikoliitin ja lymfosyyttisen koliitin kliinisiä piirteitä, mahalaukun ja ohutsuolen limakalvon muutoksia sekä immunogeneettistä taustaa. Tutkimukseen osallistui 30 kollageeni- ja 54 lymfosyyttikoliittipotilasta sekä verrokkeja. Sekä kollageenikoliitti että lymfosyyttinen koliitti diagnosoitiin keskimäärin 50&#8211;60 v iässä, ja molemmissa tautiryhmissä naisia oli enemmän kuin miehiä. Autoimmuunisairaudet kuten keliakia olivat yleisiä liitännäissairauksia. Astmaa esiintyi lymfosyyttistä koliittia sairastavilla verrokkeja enemmän. Laktoosi-intoleranssi oli yleistä, mutta paksusuolen divertikuloosia oli harvoin mikroskooppista koliittia sairastavilla potilailla. Ileumin muutokset olivat yleisiä. Mikroskooppinen koliitti ei assosioitunut fokaaliseen gastriittiin. Lymfosyyttigastriittia todettiin vain lymfosyyttisessä koliitissa. Mahalaukun eroosioita esiintyi enemmän kollageenikoliitissa kuin lymfosyyttisessa koliitissa. Mikroskooppinen koliitti ilmeni iäkkäämpänä niillä, joilla todettiin helikobakteeri. Pohjukaissuolen suolinukka oli keliakiasta riippumatta matalampaa kuin verrokeilla. HLA-DR3-DQ2 haplotyyppiä, TNF-2 alleelia ja IL-6-174-GG genotyyppiä esiintyi enemmmän mikroskooppista koliittia sairastavilla potilailla kuin verrokeilla. IL-6 genotyyppi ei vaikuttanut seerumin IL-6-pitoisuuteen. IL-6 pitoisuus oli korkeampi kollageenikoliitissa kuin lymfosyyttisessä koliitissa. Havainnot osoittavat, että mikroskooppisessa koliitissa limakalvomuutoksia on paksusuolen lisäksi myös muualla mahasuolikanavassa. Keliakia on tavallinen liitännäistauti. HLA-DR3-DQ2 on yleinen mikroskooppista koliittia sairastavilla myös ilman keliakiaa. IL-6-174-GG genotyypin yleisyys viittaa siihen, että tämä polymorfismi saattaa altistaa mikroskooppiselle koliitille. Vaikka kollageenikoliitti ja lymfosyyttinen koliitti ovat kliinisesti samankaltaisia sairauksia, erot tautiassosiaatioissa, mahan limakalvon muutoksissa ja seerumin IL-6-tasoissa viittaavat erilaisiin syntymekanismeihin.

Background &amp; Aims: Celiac disease (CD) is a chronic inflammatory small-bowel enteropathy caused by permanent intolerance to gliadin in wheat gluten, and related proteins in ray and barley. It is disputed whether CD patients tolerate oats. The only treatment of CD is lifelong gluten-free diet (GFD). Only individuals that carry the HLA-DQ2 and/or DQ8 alleles, and eat gluten can develop CD. Dysbiosis in the gut microbiota is a suggested risk factor for CD. T cells in small intestinal mucosa, including intraepithelial lymphocytes (IELs), are known to be important in the pathogenesis of CD. In contrast, the role of intestinal epithelial cells (IECs) is poorly understood. In this thesis we investigated the role of IECs in the immune pathology of CD from duodenal mucosa of children with CD, clinical controls and treated CD. We also investigated the role of CD associated bacteria and oats supplemented GFD on the mucosal immune system. Results: A new CD-associated bacterium, Prevotella jejuni, was isolated and characterized. It is a saccharolytic and proteolytic anaerobe. More than 25 defense-related genes, including IRF1, SPINK4, ITLN1, OAS2, CIITA, HLA-DMB, HLA-DOB, PSMB9, TAP1, BTN3A1, and CX3CL1, were upregulated in IECs in active CD. In two in vitro models for intestinal epithelium, small intestine enteroids and T84 polarized tight monolayers, we showed that 70% of these genes were upregulated by interferon (IFN)-γ via the IRF1 pathway. IRF1 was also upregulated by the CD-associated bacteria P. jejuni and Actinomyces gravenitzii. IECs expressed the NLRP6/8 inflammasome yielding CASP1 and biologically active interleukin (IL)-18, which induces IFN-γ in IELs. P. jejuni bound the intestinal epithelial cell lines T84, Caco2, HT29, and INT407, while Lachnoanaerobaculum umeaense preferentially bound Caco2. P. jejuni caused decreased transepithelial resistance over tight monolayers, while L. umeaense caused an increase. P. jejuni upregulated mRNAs for the detoxification molecules CYP1A1, CYP1A2, CYP1B1, and TIPARP, the chemokines CX3CL1, CXCL1, and CXCL10, the sialyltranserase ST3GAL4, and the inflammation promoting protein S100A3 in tight monolayers. L. umeaense upregulated the chemokines CCL20 and CXCL10, and down-regulated TLR2. In a randomized, double-blinded intervention trial comparing two study-groups, standard GFD and oat-containing GFD, we found that mRNAs for several immune effector molecules and tight junction proteins were only reduced in patients receiving GFD, but not in a substantial fraction of patients on GFD with oats. The down-regulatory cytokines IL-10 and TGF-β1, the cytotoxicity-activating NK-receptors NKG2C and NKG2E, and the tight junction protein claudin-4 remained elevated in the study group on GFD with oats. Conclusions: IECs are far from inactive in CD. A key factor in the epithelial reaction in CD appears to be over-expression of IRF1 in IECs. Dual activation of IRF1 and IRF1-regulated genes, both directly by P. jejuni and indirectly by IFN-γ via the IL-18-inflammasome, would drastically enhance the inflammatory response and lead to the pathological situation seen in active CD. P. jejuni harms the intestinal epithelium, i.e., it is a likely risk factor for CD, while L. umeaense strengthen barrier function and local immunity, possibly acting as a protective. A fraction of CD patients should avoid oats in the diet. / Doctoral thesis

Les lymphomes T périphériques (PTCLs) sont des entités hétérogènes dont la classification a récemment été révisée. Plus de 25 entités de lymphomes T ou NK matures sont ainsi classées selon leur présentation clinico-biologique et leur origine cellulaire présumée, justifiant l’étude approfondie de leur phénotype. Des récepteurs NK (NKRs) ont été mis en évidence dans certains lymphomes cutanés. En outre, un lymphome intra-épithélial intestinal, appelé maladie coeliaque réfractaire de type II (MCRII), dérive d’un lymphocyte caractérisé par des marqueurs T et NK. Ces constatations nous ont amenés à évaluer l’expression de NKRs sur un panel représentatif de PTCLs, constitué en particulier de PTCLs primitifs intestinaux et de leucémies/lymphomes T de l’adulte associés à l’HTLV-1 (ATL). Dans l’ATL, nous montrons que KIR3DL2 est exprimé par les cellules tumorales des formes aigües. Le virus HTLV-1 et la méthylation de son promoteur jouent un rôle dans l’expression de KIR3DL2. Enfin, un anticorps monoclonal dirigé contre KIR3DL2, IPH4102, est capable de tuer spécifiquement les cellules primaires d’ATL KIR3DL2 ex vivo par un mécanisme dépendant d’effecteurs NK autologues. Dans les lymphoproliférations T intestinales primitives, nous montrons que NKp46 est un nouveau biomarqueur pour leur diagnostic et leur stratification thérapeutique. En effet, NKp46 est exprimé sur les cellules anormales de la MCRII, et sur les lymphomes T primitifs intestinaux agressifs, mais pas sur les indolents et les MC non compliquées. Enfin, les cellules primaires exprimant NKp46 sont sensibles ex vivo à la cytotoxicité induite par un anticorps monoclonal dirigé contre NKp46 et couplé à une toxine.Ces résultats nous ont permis de discuter l’origine cellulaire de ces lymphomes et le rôle de ces NKRs dans la lymphomagénèse. Dans une optique translationnelle, l’expression des NKRs peut aider au diagnostic de ces entités parfois difficiles à individualiser, et enfin constituer une cible thérapeutique intéressante. / Peripheral T-cell lymphoma (PTCLs) are heterogeneous entities whose classification has recently been revised. More than 25 entities are thus classified according to their clinico-biological presentation and their presumed cellular origin, justifying the in-depth study of their phenotype. NK receptors (NKRs) have been demonstrated in some cutaneous lymphomas. In addition, a less known intestinal lymphoma, called type II refractory celiac disease (RCDII), arises from an intraepithelial lymphocyte characterized by T and NK markers. These findings led us to evaluate the expression of NKRs on a representative panel of PTCLs, focusing on primary gastrointestinal (GI) T-cell lymphoproliferative diseases (T-LPD) and HTLV-1 associated adult T leukemia/lymphoma (ATL).In ATL, we show that KIR3DL2 expression is mainly associated with acute-type ATL. HTLV-1 has a preferential tropism for KIR3DL2+ lymphocytes and may play a role in KIR3DL2 expression induction, combined with the hypomethylation status of KIR3DL2 promoter. The benefit of targeting KIR3DL2 by IPH4102 should be further investigating in acute ATL patients.In GI T-LPD, we show that NKp46 is a novel biomarker useful for diagnosis and therapeutic stratification, as NKp46 is a hallmark of RCDII tumor cells, shared by EATL. Strong preclinical rationale identifies anti-NKp46-PBD as a promising therapy for RCDII, EATL and MEITL.These results allowed us to discuss the cellular origin of these lymphomas and the role of NKRs in lymphomagenesis. From a translational point of view, NKRs could represent useful biomarkers in these entities that are sometimes difficult to individualize, and finally constitute an interesting therapeutic target.

Name: Life of coeliac and his family in these days Aim: The aim of my diploma thesis is to map life difficulties of people with celiac disease. First of all, it is a problem with gluten-free diet which is essential for celiac disease. Problems with eating out, shopping for ingredients for meal preparation at home, expensiveness of this eating, and last but not least, support from insurance companies and the state. Methods: The theoretical part includes findings about celiac disease as an illness, it means the characteristics of its origin, diagnostics and treatment. Furthermore, findings about gluten- free diet and problems related to this kind of eating were worked. Last but not least, diet and availability of food for gluten-free eating are mentioned. I applied a survey method in the practical part, in which case an anonymous survey was created electronically by using Google forms, and then sent out via internet. The survey was filled out by 296 respondents. Outcome: We can see from the outcomes that most of the respondents sometimes break the diet due to social integration. Furthermore, we observed the frequency of eating in restaurant services, in which case most of the people sometimes visit, it means less than once a week. The reason of sporadic or even no visit to restaurants is bad...

In the Czech Republic, 50 000 people are diagnosed with Celiac disease and the only known treatment for it is a gluten-free diet. For such patients, gluten consumption can provoke inflammation of a small bowel that can result in heavy consequences. Gluten is a protein contained in wheat, rye, barley, and oats and plays an important role in food production, because of its properties. Bakery and other gluten-free products are produced from other types of cereals. They also require a special technological process, separate spaces, and have a much smaller target group of consumers, which can increase their price at the end. People following a gluten- free diet have to be very careful while eating in restaurants and canteens because even a small amount of gluten can harm their health. Health insurance companies in the Czech Republic contribute various amounts to the GFD, however, mostly only for children. The goal of the research was to find out whether and for how much gluten-free food is more expensive than the ordinary one; and how the availability of gluten-free products and meals is assessed by people who have to eliminate gluten due to health reasons. To achieve the goal, quantitative research with a questionnaire survey was used. The questionnaire with 17 questions was filled in by a hundred...

This work deals with effectiveness of coeliac disease management. It is a model case of chronic disease management. The analytical framework of this work is the multilevel Innovative Care for Chronic Conditions Framework. Crucial is the interaction between health care team that represents health care system, community partners and patients with their families. In the case of coeliac disease it is necessary to include also the role of representatives of market with gluten free products. The interaction of these participants takes place in wider political context, whose state influences this interaction fundamentaly and reflects so in final results - state of patients and quality of their live. Using the evaluation of the quality of life tool SF-36, it has been ascertained, that the quality of life of coealiac patients is lower in comparison with European standard of healthy population and that the causes of the problem have to be searched and systematically removed at all levels of the system of chronic health care. The findings validate the theoretic presumption, that the chronic health care is still considerably underestimated and that it does not reply to the needs of chronic ill patients, which reflects just on general quality of life.