No description available.

No description available.

Dans l'industrie du pneumatique, l'incorporation de nanoparticules de silice dans les élastomères permet d'obtenir des pneumatiques avec des propriétés mécaniques améliorées. D'un point de vue fondamental, deux contributions sont communément invoquées pour expliquer ces changements : (i) une contribution du réseau de charges, fortement dépendante de leur état de dispersion, (ii) une contribution des chaines dont la conformation est potentiellement modifiée en présence du réseau de charges. Cependant, les mécanismes permettant de relier cette structure nanométrique aux propriétés macroscopiques du matériau sont encore mal compris. Dans ce contexte, nous avons synthétisé des systèmes SBR/Silice modèles constituant une première approche de systèmes industriels plus complexes. En modifiant les conditions de dispersion au moyen d'agent de greffage, nous avons obtenu des nanocomposites avec des dispersions variées et reproductibles, avec des organisations multi-échelle. Celles-ci ont été caractérisées finement par l'utilisation combinée de la Diffusion de Rayons X aux Petits Angles (DXPA) et de la Microscopie Electronique en Transmission (MET). La conformation des chaines, déterminée expérimentalement par Diffusion de Neutrons aux Petits Angles (DNPA), n'est pas affectée par un effet à longue distance des charges. La caractérisation quantitative de la dispersion a permis de mettre en évidence le rôle prépondérant de la compacité des agrégats de silice et de la densité de leur réseau sur le renforcement dans le régime élastique.

A significant focus of nucleic acids research is on the reactivity of electrophilic species with DNA to form addition products (adducts). Phenols are known to be able to form adducts at the C8 site of deoxyguanosine (dG). This dissertation studies the oxygen (O)-linked class of phenolic dG adducts for their hydrolytic stability as well as their structural impact on the DNA duplex. To determine the effect of C8 O-linked phenolic dG adducts on glycosidic bond stability spectrophotometric determination of hydrolysis kinetics was performed. The kinetics establish the adducts to be less stable than native dG in acid, but surprisingly stable under physiological conditions. Then to assess the modified duplex structure, a C8 O-linked phenolic dG adduct was incorporated into a DNA duplex. Thermal melting analysis establish the adduct as having a destabilizing effect on the regularly paired duplex and the conformational analysis suggests the phenolic lesion to be weakly mutagenic. / NSERC

Les molécules classiques du CMH de classe II présentent des peptides antigéniques aux lymphocytes T CD4+. Cette présentation est régulée par deux molécules non classiques : HLA-DM catalyse la relâche de CLIP et le chargement de peptides et HLA-DO module l’activité de DM. Une expression insuffisante en cellules d’insectes empêche les expériences de cristallisation de DO, probablement en raison de sa conformation, rendant DO instable et inapte à sortir du réticulum endoplasmique (RE). DM corrige la conformation de DO et permet sa sortie du RE. Aussi, par ses ponts disulfures uniques, DM adopte une conformation stable et peut sortir du RE sans lier d’autre molécule. Nous avons tenté de corriger la conformation de DO en introduisant des cystéines pour établir des ponts homologues à ceux de DM. La conformation de DO ne fut pas corrigée. Par ailleurs, nous avons augmenté l’expression de DO en introduisant une séquence partielle de Kozak. Nous avons aussi étudié l’effet de DM sur l’expression de DO. DM a favorisé l’expression de DO, probablement en diminuant sa dégradation. Chaque chaîne du dimère DMαβ est impliquée dans l’oxydation de sa chaîne partenaire. La conformation non-optimale de DO pourrait traduire une incapacité des chaînes α ou β à favoriser l’oxydation de sa partenaire; DM corrigerait ce problème. Notre analyse d’immunobuvardage de type Western a toutefois démontré que DM ne modifie pas l’état d’oxydation de DOα et DOβ. Finalement, nous avons étudié l’interaction DO-DM. L’acide aminé DOαE41 est impliqué dans cette liaison. Certains des acides aminés entre α80 et α84 pourraient être impliqués. Nous avons muté des acides aminés de cette région de DOα. Les résidus testés ne semblent pas impliqués dans la liaison DO-DM. L’obtention de la structure tridimensionnelle de DO et la caractérisation de son état oxydatif et de sa liaison à DM permettront de mieux comprendre son rôle. / Classical MHC class II molecules present antigenic peptides to CD4+ T cells. This presentation is regulated by two non-classical molecules: HLA-DM catalyzes CLIP release and peptide loading and HLA-DO mediates the DM activity. An insufficient expression in insect cells did not allow DO crystal production experiments, probably because of its conformation, rendering DO unstable and unable to leave the endoplasmic reticulum (ER). DM corrects the conformation of DO and allows its egress from the ER. Also, because of its unique disulfide bonds, DM has a stable conformation and can egress from the ER without binding another molecule. We tried to correct the conformation of DO by introducing cysteines to create disulfide bonds homologous to those of DM. However, its conformation was not corrected. Also, we increased DO expression by inserting a partial Kozak sequence. We also studied the effect of DM on DO expression. DM favoured DO expression, probably by reducing its degradation. Each chain of the DMαβ dimer plays a role in the oxidation of its partner chain. The non-optimal conformation of DO might result from an incapacity of its α and β chains to direct each other’s oxidation; DM would correct this problem. Our Western blot analysis showed, however, that DM does not modify the oxidation state of DOα and DOβ. Finally, we studied the DO-DM interaction. The DOαE41 amino acid is involved in this interaction, as some of the α80 to α84 might be. We mutated amino acids in this region of DO. Tested amino acids did not seem involved in DO-DM binding. The tridimensional structure of DO and the characterization of its oxidative state and its DM binding will allow a better understanding of its function.

Le récepteur A des peptides natriurétiques (NPRA) fait partie de la famille des guanylates cyclases membranaires. L’activation du NPRA par ses agonistes naturels, ANP et BNP, induit une production de GMPc qui est responsable de leur rôle dans l’homéostasie cardiovasculaire, l’inhibition de l’hypertrophie et de la fibrose cardiaques et la régulation de la lipolyse. Le NPRA est un homodimère non covalent composé d’un domaine extracellulaire de liaison du ligand (ECD), d’un unique domaine transmembranaire (TM), d’un domaine d’homologie aux kinases et d’un domaine guanylate cyclase. Bien que le NPRA ait un rôle physiologique important, les mécanismes moléculaires régissant son processus d’activation restent inconnus. Nous avons donc analysé les premières étapes du processus d’activation du NPRA. Nous avons d'abord étudié le rôle de la dimérisation des ECD dans l’activation du récepteur. Nous avons utilisé les techniques de liaison de radioligand, de FRET et de modélisation moléculaire, pour caractériser la liaison à l’ECD des agonistes naturels, d’un superagoniste et d’un antagoniste. L’ANP se lie à un dimère d’ECD préformé et la dimérisation spontanée est l’étape limitante du processus de liaison. De plus, comme le démontrent nos études de FRET, tous les peptides, incluant l’antagoniste, stabilisent le récepteur sous sa forme dimérique. Cependant, l’antagoniste A71915 stabilise le dimère d’ECD dans une conformation différente de celle induite par l’ANP. La dimérisation du NPRA semble donc nécessaire, mais non suffisante à l’activation du récepteur. L’état d’activation du NPRA dépend plutôt de l’orientation des sous unités dans le dimère. Nous avons ensuite étudié le mécanisme moléculaire de transduction du signal à travers la membrane. Plusieurs études ont suggéré que l’activation du NPRA implique un changement de conformation du domaine juxtamembranaire (JM). Cependant, les études de cristallographie de l’ECD soluble de NPRA n’ont pas permis de documenter la structure du JM et le changement de conformation impliqué dans la transduction du signal reste inconnu. Pour analyser ce changement de conformation, nous avons d’abord séquentiellement substitué les neuf acides aminés du JM par une cystéine. En étudiant la capacité des mutants à former des dimères covalents de façon constitutive ou induite par l’ANP, nous avons pu évaluer la proximité relative des résidus du JM, avant et après activation du NPRA. Ces résultats ont démontré la proximité élevée de certains résidus spécifiques et sont en contradiction avec les données cristallographiques. Nous avons également démontré que le domaine intracellulaire impose une contrainte conformationnelle au JM à l’état de base, qui est levée après liaison de l’ANP. En introduisant de 1 à 5 alanines dans l’hélice-α transmembranaire, nous avons montré qu’une rotation des TM de 40° induit une activation constitutive du NPRA. Le signal d’activation pourrait donc être transmis à travers la membrane par un mécanisme de rotation des TM. En utilisant nos données expérimentales, nous avons généré le premier modèle moléculaire illustrant la conformation active du NPRA, où les domaines JM et TM sont représentés. Dans son ensemble, cette étude apporte une meilleure compréhension des mécanismes moléculaires régissant les premières étapes du processus complexe d’activation du NPRA. / Natriuretic peptide receptor-A (NPRA) is a member of the particulate guanylate cyclase family. NPRA activation by natural agonists, ANP and BNP, leads to cGMP production, which is responsible for their role in cardiovascular homeostasis, cardiac hypertrophy and fibrosis inhibition and lipolysis regulation. NPRA is a non covalent dimer composed of an extracellular domain (ECD) with a ligand binding site, a single transmembrane region (TM), a kinase homology domain, and a guanylyl cyclase domain. Although NPRA plays an important physiologic role, molecular mecanisms driving its activation process are yet unknown. We thus analysed the first steps of NPRA’s activation process. First, we studied the role of ECD dimerization in receptor activation and determined the sequential steps of this dimerization process. We used radioligand binding, FRET and molecular modeling to characterize the interaction of ECD with natural agonists, a superagonist and an antagonist. ANP binds to preformed ECD dimers and spontaneous dimerization is the rate-limiting step of the ligand binding process. Furthermore, like demonstrated with fluorescence homoquenching, all the studied peptides, including A71915 antagonist, stabilize a dimeric form of the receptor. However, A71915 stabilizes the ECD dimer in a conformation distinct from those induced by ANP. Thus, ECD dimerization is necessary but not sufficient for NPRA activation. The activation state of NPRA seems to depend on the orientation of the receptor subunits within the dimer. Then, we tried to identify the molecular mechanism of signal transduction through the plasma membrane. Previous studies have shown that activation of NPRA involves a conformational change of the juxtamembrane domain (JM). However, crystallographic study of the soluble ECD of NPRA has failed to document JM structure, and the conformational change involved in transmembrane signal transduction is still unknown. To analyse this conformational change, we first sequentially substituted nine amino acids of JM by a cysteine residue. By studying the mutant’s capacity to form ANP-induced or constitutive covalent disulfide dimers, we evaluated the relative proximity of JM residues, before and after NPRA activation. These results demonstrate a high proximity of specific JM residues and are in disagreement with crystallography data. We also demonstrated that intracellular domain imposes a conformational constraint on JM at basal state, which becomes relaxed upon ANP binding. We finally confirmed, with a full-length receptor, that A71915 stabilizes NPRA in a dimeric form where JM are in a conformation distinct from the basal state. By introducing 1 to 5 alanine residues in the transmembrane α-helix, we showed that a TM rotation of 40° leads to constitutive NPRA activation. Activation signal could thus be transmitted through the membrane by a TM rotation mechanism. We finally studied the role of the TM in NPRA dimerization. By using the ToxR system, we demonstrated that the last JM residues are required to stabilize the TM dimer. Using these experimental data, we generated the first molecular model illustrating the active conformation of NPRA, where JM and TM are depicted. In summary, this study allows a better understanding of molecular mecanisms driving the first steps of NPRA’s complex activation process.

Body size is an important determinant of reproduction in capital breeding animals, including large mammals. However, it is not always practical to hand-measure body size of free-ranging species. In recent years, parallel-laser photogrammetry has been used to obtain remote estimates of body size for some animals, though it remains unknown how well this technique might capture variation in curvilinear body features or if the distance between parallel-laser calipers is altered when projected onto a curved surface. In this thesis, I describe a photogrammetric system that may be useful for obtaining body-size measurements from unrestrained large mammals that permit approach, using domestic horses (Equus ferus caballus) as a model (Chapter 2). I then apply this technique in the field to a wild (feral) population of horses at Sable Island National Park Reserve, Nova Scotia, Canada, where I include body size measurements as variables in a detailed analysis of factors affecting reproduction in females (Chapter 3). Using my parallel-laser photogrammetric system, I show how curvilinear hand-measurements (e.g., across the barrel of a horse) are stongly correlated with their respective linear photogrammetric estimates (R2 ≥ 0.998), and most photogrammetric estimates using my system had high reliability. Using three variables of body size, photogrammetric estimates and hand-measurements explained 86.0% and 96.2%, respectively, of the variation in body weight of a sample of domestic Newfoundland ponies. On Sable Island, Nova Scotia, I examined the relationship of numerous variables (including skeletal body size and body condition) with the probability of yearly reproductive success for female Sable Island horses (years 2008–2012), where I define reproductive success as production of an offspring surviving to one year of age. Age class was a dominant factor predicting reproductive success, as expected from trends previously associated with body size or reproductive experience iii in other populations. Age-class specific energy budgets or social and sexual behaviour caused a more pronounced relationship with body condition at parturition in sub-adults, and body condition at conception and stability of consort relationships were associated with reproductive success in adults. In addition, relationships with local density suggested limited forage around the time of conception and limited water during lactation might also influence reproductive success in adult females. Although relationships were evident for age class, which is correlated with body size, reproductive success was not related to skeletal body size, past reproductive experience, age of primiparity, or band structure. The capital breeding strategy and year-round social associations seen in horses make their reproductive ecology a combination of patterns observed for large ungulates and social primates.

No description available.

Heterogeneous line broadening and spectral diffusion of the fluorescence emission spectra of perylene diimide molecules have been investigated by means of time dependent single molecule spectroscopy. The influence of temperature and environment has been studied and reveals strong correlation to spectral diffusion processes. We followed the freezing of the molecular mobility of quasi free molecules on the surface upon temperature lowering and by embedding into a poly(methyl methacrylate) (PMMA) polymer. Thereby changes of optical transition energies as a result of both intramolecular changes of conformation and external induced dynamics by the surrounding polymer matrix could be observed. Simulations of spectral fluctuations within a two-level system (TLS) model showed good agreement with the experimental findings.

The use of polymers as flocculating additives is a common practice in many manufacturing environments. However, exactly how these polymers interact with surfaces is relatively unknown. One specific topic which is thought to be very important to flocculation is an adsorbed polymer's conformation. Substantial amounts of previous work, mainly using simulations, have been performed to elucidate the theory surrounding adsorbed polymer conformations. Yet, there is little experimental work which directly verifies current theory. In order to optimize the use of polymer flocculants in industrial applications, a better understanding of an adsorbed polymer's conformation on a surface beyond theoretical simulations is necessary. This work looks specifically at site blocking, which has a broad impact on flocculation, adsorption, and surface modification, and investigated its effects on the resulting adsorbed polymer conformation. Experimental methods which would allow direct determination of adsorbed polymer conformational details and be comparable with previous experimental results were first determined or developed. Characterization of an adsorbed polymer's conformation was then evaluated using dynamic light scattering, a currently accepted experimental technique to examine this. This commonly used technique was performed to allow the comparison of this works results with past literature. Next, a new technique using atomic force microscopy was developed, building on previous experimental techniques, to allow the direct determination of an adsorbed polymer's loop lengths. This method also was able to quantify changes in the length of adsorbed polymer tails. Finally, mesoscopic simulation was attempted using dissipative particle dynamics. In order to determine more information about an adsorbed polymer's conformation, three different environmental factors were analyzed: an adsorbed polymer on a surface in water, an adsorbed polymer on a surface in aqueous solutions of varying ionic strength, and an adsorbed polymer on a surface functionalized with site blocking additives. This work investigated these scenarios using a low charge density high molecular weight cationic polyacrylamide. Three different substrates, for polymer adsorption were analyzed: mica, anionic latex, and glass. It was determined that, similar to previous studies, the adsorbed polymer layer thickness in water is relatively small even for high molecular weight polymers, on the order of tens of nanometers. The loop length distribution of a single polymer, experimentally verified for the first time, revealed a broad span of loop lengths as high as 1.5 microns. However, the bulk of the distribution was found between 40 and 260 nanometers. For the first time, previous theoretical predictions regarding the salt effect on adsorbed polymer conformation were confirmed experimentally. It was determined that the adsorbed polymer layer thickness expanded with increasing ionic strength of the solvent. Using atomic force microscopy, it was determined that the adsorbed polymer loop lengths and tail lengths increased with increasing ionic strength, supporting the results found using dynamic light scattering. The effect of the addition of site blocking additives on a single polymer's conformation was investigated for the first time. It was determined that the addition of site blocking additives caused strikingly similar results as the addition of salt to the medium. The changes in an adsorbed polymer's loop lengths was found to be inconsistent and minimal. However, the changes in an adsorbed polymer's free tail length was found to increase with increasing site blocking additive levels. These results were obtained using either PDADMAC or cationic nanosilica as site blocking additives.